Package: guix;
Reported by: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Date: Sun, 23 Mar 2025 00:06:02 UTC
Severity: normal
Message #23 received at 77195 <at> debbugs.gnu.org (full text, mbox):
From: Andreas Enge <andreas <at> enge.fr> To: 77195 <at> debbugs.gnu.org Cc: ludo <at> gnu.org, sharlatanus <at> gmail.com, pgarlick <at> tourbillion-technology.com, Andreas Enge <andreas <at> enge.fr>, efraim <at> flashner.co.il Subject: [PATCH 2/7] gnu: Remove fenics. Date: Mon, 31 Mar 2025 23:52:51 +0200
* gnu/packages/simulation.scm (fenics): Delete variable.
Change-Id: I3d34832d935c2a6ebcd6ec71e6e9a7167a0a59f6
---
gnu/packages/simulation.scm | 129 ------------------------------------
1 file changed, 129 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 161e6a85d4..102cbf8977 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -909,135 +909,6 @@ (define-public fenics-dolfin
license:expat
license:lgpl3+))))
-(define-public fenics
- (package/inherit fenics-dolfin
- (name "fenics")
- (build-system python-build-system)
- (inputs
- (modify-inputs (package-inputs fenics-dolfin)
- (delete "python")
- (prepend pybind11 python-matplotlib)))
- (native-inputs
- (modify-inputs (package-native-inputs fenics-dolfin)
- (prepend cmake-minimal python-ply python-pytest python-decorator)))
- (propagated-inputs
- (list fenics-dolfin
- python-petsc4py
- python-slepc4py
-
- ;; 'dolfin/jit/jit.py' parses 'dolfin.pc' at run time.
- python-pkgconfig))
- (arguments
- (list #:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'relax-requirements
- (lambda _
- (substitute* "python/setup.py"
- (("pybind11==")
- "pybind11>="))))
- (add-after 'unpack 'set-dolfin-pc-file-name
- (lambda* (#:key inputs #:allow-other-keys)
- ;; Instead of cluttering the user's 'PKG_CONFIG_PATH' environment
- ;; variable, hard-code the 'dolfin.pc' absolute file name.
- (let ((pc-file (search-input-file inputs
- "/lib/pkgconfig/dolfin.pc")))
- (substitute* "python/dolfin/jit/jit.py"
- (("pkgconfig\\.parse\\(\"dolfin\"\\)")
- (string-append "pkgconfig.parse(\"" pc-file
- "\")"))))))
- (add-after 'patch-source-shebangs 'set-paths
- (lambda _
- ;; Define paths to store locations.
- (setenv "PYBIND11_DIR" #$(this-package-input "pybind11"))
- ;; Move to python sub-directory.
- (chdir "python")))
- (add-after 'build 'mpi-setup
- #$%openmpi-setup)
- (add-before 'check 'pre-check
- (lambda _
- ;; Exclude three tests that generate
- ;; 'NotImplementedError' in matplotlib version 3.1.2.
- ;; See
- ;; <https://github.com/matplotlib/matplotlib/issues/15382>.
- ;; Also exclude tests that require meshes supplied by
- ;; git-lfs.
- (substitute* "demo/test.py"
- (("(.*stem !.*)" line)
- (string-append line
- "\n"
- "excludeList = [\n"
- "'built-in-meshes', \n"
- "'hyperelasticity', \n"
- "'elasticity', \n"
- "'multimesh-quadrature', \n"
- "'multimesh-marking', \n"
- "'mixed-poisson-sphere', \n"
- "'mesh-quality', \n"
- "'lift-drag', \n"
- "'elastodynamics', \n"
- "'dg-advection-diffusion', \n"
- "'curl-curl', \n"
- "'contact-vi-tao', \n"
- "'contact-vi-snes', \n"
- "'collision-detection', \n"
- "'buckling-tao', \n"
- "'auto-adaptive-navier-stokes', \n"
- "'advection-diffusion', \n"
- "'subdomains', \n"
- "'stokes-taylor-hood', \n"
- "'stokes-mini', \n"
- "'navier-stokes', \n"
- "'eigenvalue']\n"
- "demos = ["
- "d for d in demos if d[0].stem not in "
- "excludeList]\n")))
- (setenv "HOME"
- (getcwd))
- ;; Restrict OpenBLAS to MPI-only in preference to MPI+OpenMP.
- (setenv "OPENBLAS_NUM_THREADS" "1")))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (with-directory-excursion "test"
- (invoke "pytest"
- "unit"
- ;; The test test_snes_set_from_options() in the file
- ;; unit/nls/test_PETScSNES_solver.py fails and is ignored.
- "--ignore"
- "unit/nls/test_PETScSNES_solver.py"
- ;; Fails with a segfault.
- "--ignore"
- "unit/io/test_XDMF.py")))))
- (add-after 'install 'install-demo-files
- (lambda* (#:key outputs #:allow-other-keys)
- (let* ((demos (string-append (assoc-ref outputs "out")
- "/share/python-dolfin/demo")))
- (mkdir-p demos)
- (with-directory-excursion "demo"
- (for-each (lambda (file)
- (let* ((dir (dirname file))
- (tgt-dir (string-append
- demos "/" dir)))
- (unless (equal? "." dir)
- (mkdir-p tgt-dir)
- (install-file file tgt-dir))))
- (find-files "." ".*\\.(py|gz|xdmf)$")))))))))
- (home-page "https://fenicsproject.org/")
- (synopsis "High-level environment for solving differential equations")
- (description
- "@code{fenics} is a computing platform for solving general classes of
-problems that involve differential equations. @code{fenics} facilitates
-access to efficient methods for dealing with ordinary differential
-equations (ODEs) and partial differential equations (PDEs). Systems of
-equations such as these are commonly encountered in areas of engineering,
-mathematics and the physical sciences. It is particularly well-suited to
-problems that can be solved using the Finite Element Method (FEM).
-
-@code{fenics} is the top level of the set of packages that are developed
-within the FEniCS project. It provides the python user interface to the
-FEniCS core components and external libraries.")
- (license license:lgpl3+)))
-
(define-public fullswof-2d
(let ((revision 505)
(release "1.09.01"))
--
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