Package: guix;
Reported by: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Date: Sun, 23 Mar 2025 00:06:02 UTC
Severity: normal
View this message in rfc822 format
From: Andreas Enge <andreas <at> enge.fr> To: 77195 <at> debbugs.gnu.org Cc: ludo <at> gnu.org, sharlatanus <at> gmail.com, pgarlick <at> tourbillion-technology.com, Andreas Enge <andreas <at> enge.fr>, efraim <at> flashner.co.il Subject: bug#77195: [PATCH 3/7] gnu: Remove fenics-dolfin. Date: Mon, 31 Mar 2025 23:52:52 +0200
* gnu/packages/simulation.scm (fenics-dolfin): Delete variable.
Change-Id: If3eed285af25544a2369afecd6c525b160804d78
---
gnu/packages/simulation.scm | 170 ------------------------------------
1 file changed, 170 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 102cbf8977..c5345c934f 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -739,176 +739,6 @@ (define-public python-fenics-ffc
;; ufc.h and ufc_geometry.h, in subdirectory 'ffc/backends/ufc'.
(license (list license:public-domain license:lgpl3+))))
-(define-public fenics-dolfin
- (package
- (name "fenics-dolfin")
- (version "2019.1.0.post0")
- (source
- (origin
- (method url-fetch)
- (uri (string-append
- "https://bitbucket.org/fenics-project/dolfin/get/"
- version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32
- "1m91hwcq5gfj4qqswp8l8kj58nia48f0n4kq13w0xqj4biq7rla0"))
- (patches (search-patches "fenics-dolfin-algorithm.patch"
- "fenics-dolfin-demo-init.patch"
- "fenics-dolfin-boost.patch"
- "fenics-dolfin-config-slepc.patch"))
- (modules '((guix build utils)))
- (snippet
- '(begin
- ;; Make sure we don't use the bundled test framework.
- (delete-file-recursively "test/unit/cpp/catch")
- (substitute* "test/unit/cpp/main.cpp"
- ;; Use standard search paths for 'catch' header file.
- (("#include.*")
- "#include <catch.hpp>\n"))
- (substitute* "test/unit/cpp/CMakeLists.txt"
- ;; Specify directory to find the header file.
- (("(^set\\(CATCH_INCLUDE_DIR ).*(/catch\\))" _ front back)
- (string-append front
- "$ENV{CATCH_DIR}/include" back "\n")))))))
- (build-system cmake-build-system)
- (inputs
- (list openblas
- boost
- eigen
- hdf5-parallel-openmpi
- libxml2
- openmpi
- python-3
- pt-scotch32
- suitesparse
- sundials-openmpi
- zlib))
- (native-inputs
- (list catch-framework pkg-config))
- (propagated-inputs
- (list python-fenics-ffc petsc-openmpi slepc-openmpi))
- (arguments
- (list #:configure-flags #~`("-DDOLFIN_ENABLE_DOCS:BOOL=OFF"
- "-DDOLFIN_ENABLE_HDF5:BOOL=ON"
- "-DDOLFIN_ENABLE_MPI:BOOL=ON"
- "-DDOLFIN_ENABLE_PARMETIS:BOOL=OFF"
- "-DDOLFIN_ENABLE_SCOTCH:BOOL=ON"
- "-DDOLFIN_ENABLE_SUNDIALS:BOOL=ON"
- "-DDOLFIN_ENABLE_TRILINOS:BOOL=OFF")
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'patch-usr-bin-file 'mpi-setup
- #$%openmpi-setup)
- (add-after 'patch-source-shebangs 'set-paths
- (lambda _
- ;; Define paths to store locations.
- (setenv "BLAS_DIR"
- #$(this-package-input "openblas"))
- (setenv "CATCH_DIR"
- #$(this-package-input "catch"))
- (setenv "LAPACK_DIR"
- #$(this-package-input "openblas"))
- (setenv "PETSC_DIR"
- #$(this-package-input "petsc"))
- (setenv "SLEPC_DIR"
- #$(this-package-input "slepc"))
- (setenv "SCOTCH_DIR"
- #$(this-package-input "scotch"))
- (setenv "SUNDIALS_DIR"
- #$(this-package-input "sundials"))
- (setenv "UMFPACK_DIR"
- #$(this-package-input "suitesparse"))))
- (add-before 'check 'pre-check
- (lambda _
- ;; The Dolfin repository uses git-lfs, whereby web links are
- ;; substituted for large files. Guix does not currently support
- ;; git-lfs, so only the links are downloaded. The tests that
- ;; require the absent meshes cannot run and are skipped.
- ;;
- ;; One serial test fails and is skipped.
- ;; i) demo_multimesh-stokes_serial:
- ;; Warning: Found no facets matching domain for boundary
- ;; condition.
- ;;
- ;; One mpi test fails and is skipped.
- ;; i) demo_stokes-iterative_mpi:
- ;; The MPI_Comm_rank() function was called before MPI_INIT was
- ;; invoked
- (call-with-output-file "CTestCustom.cmake"
- (lambda (port)
- (display (string-append
- "set(CTEST_CUSTOM_TESTS_IGNORE "
- "demo_bcs_serial "
- "demo_bcs_mpi "
- "demo_eigenvalue_serial "
- "demo_eigenvalue_mpi "
- "demo_navier-stokes_serial "
- "demo_navier-stokes_mpi "
- "demo_stokes-taylor-hood_serial "
- "demo_stokes-taylor-hood_mpi "
- "demo_subdomains_serial "
- "demo_advection-diffusion_serial "
- "demo_advection-diffusion_mpi "
- "demo_auto-adaptive-navier-stokes_serial "
- "demo_contact-vi-snes_serial "
- "demo_contact-vi-snes_mpi "
- "demo_contact-vi-tao_serial "
- "demo_contact-vi-tao_mpi "
- "demo_curl-curl_serial "
- "demo_curl-curl_mpi "
- "demo_dg-advection-diffusion_serial "
- "demo_dg-advection-diffusion_mpi "
- "demo_elasticity_serial "
- "demo_elasticity_mpi "
- "demo_elastodynamics_serial "
- "demo_elastodynamics_mpi "
- "demo_lift-drag_serial "
- "demo_lift-drag_mpi "
- "demo_mesh-quality_serial "
- "demo_mesh-quality_mpi "
- "demo_multimesh-stokes_serial "
- ")\n") port)))))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "make" "unittests")
- (invoke "make" "demos")
- (invoke "ctest" "-R" "unittests")
- (invoke "ctest" "-R" "demo" "-R" "serial")
- (invoke "ctest" "-R" "demo" "-R" "mpi")))))))
- (home-page "https://bitbucket.org/fenics-project/dolfin/")
- (synopsis "Problem solving environment for differential equations")
- (description
- "DOLFIN is a computational framework for finding numerical
-solutions to problems described by differential equations. Numerical
-models in DOLFIN are constructed using general families of finite
-elements. Data structures are provided for discretizing the governing
-system on a computational mesh. A compact syntax, similar to
-mathematical notation, is made available for defining function spaces
-and expressing variational forms. Interfaces to specialized matrix
-solvers are provided for solving the resultant linear systems.
-
-@code{fenics-dolfin} is part of the FEniCS project. It is the C++
-user interface to the FEniCS core components and external libraries.")
- ;; The source code for the DOLFIN C++ library is licensed under the
- ;; GNU Lesser General Public License, version 3 or later, with the
- ;; following exceptions:
- ;;
- ;; public-domain: dolfin/geometry/predicates.cpp
- ;; dolfin/geometry/predicates.h
- ;;
- ;; zlib: dolfin/io/base64.cpp
- ;; dolfin/io/base64.h
- ;;
- ;; expat: dolfin/io/pugiconfig.hpp
- ;; dolfin/io/pugixml.cpp
- ;; dolfin/io/pugixml.hpp
- (license (list license:public-domain
- license:zlib
- license:expat
- license:lgpl3+))))
-
(define-public fullswof-2d
(let ((revision 505)
(release "1.09.01"))
--
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1994-97 Ian Jackson.