GNU bug report logs - #74119
[PATCH] gnu: Add r-netid.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#74119: closed ([PATCH] gnu: Add r-netid.)
Date: Fri, 01 Nov 2024 11:30:02 +0000

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Your message dated Fri, 01 Nov 2024 12:29:06 +0100
with message-id <877c9njipp.fsf <at> elephly.net>
and subject line [PATCH] gnu: Add r-netid.
has caused the debbugs.gnu.org bug report #74119,
regarding [PATCH] gnu: Add r-netid.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
74119: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=74119
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add r-netid.
Date: Wed, 30 Oct 2024 19:14:11 +0000

* gnu/packages/cran.scm (r-netid): New variable.

Change-Id: Icf8fd23c6f24252350c783faa7f34f35eb1fbce2
---
 gnu/packages/cran.scm | 44 +++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 44 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 1c2efc6b4c..f3b6fdc7ba 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11906,6 +11906,50 @@ (define-public r-nestedcv
 of prediction methods available in @code{caret}.")
     (license license:expat)))
 
+(define-public r-netid
+  (let ((commit "6ad1ffdd64a6584cc1d392524dad8e248d4590a8")
+        (revision "1"))
+    (package
+      (name "r-netid")
+      (version (git-version "0.1.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/WWXkenmo/NetID_package")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1blm5ljql91xmbyxxwm3vw8iz8d4ir9gm7wfnapqhfdbjvg4l21q"))))
+      (properties `((upstream-name . "NetID")))
+      (build-system r-build-system)
+      (propagated-inputs (list r-doparallel
+                               r-dorng
+                               r-glmnet
+                               r-hmisc
+                               r-igraph
+                               r-irlba
+                               r-lmtest
+                               r-matrix
+                               r-mclust
+                               r-pracma
+                               r-raceid
+                               r-rarpack
+                               r-reticulate
+                               r-robustrankaggreg
+                               r-rsvd
+                               r-seurat))
+      (native-inputs (list r-knitr))
+      (home-page "https://github.com/WWXkenmo/NetID_package")
+      (synopsis
+       "Scalable method to infer fate-specific networks from single-cell data")
+      (description
+       "This package provides a method to sample cells from single-cell data.
+It also generates an aggregate profile on a pruned K-Nearest Neighbor graph.
+This approach leads to an improved gene expression profile for quantifying
+gene regulations.")
+      (license license:expat))))
+
 (define-public r-network
   (package
     (name "r-network")

base-commit: d6f775c30c6f47e174f6110d1089edc6315600e4
prerequisite-patch-id: 54292fa0b75533f02730e2da44993ad685d4a432
prerequisite-patch-id: 360575ef7e49c4e4e6b52644964df061856aee57
prerequisite-patch-id: 3904682af2961b8cb06ced06ab62c60604114dad
prerequisite-patch-id: 0e861c88ccc360c3a1bcd0ce92d90a9aeb1455c0
prerequisite-patch-id: 7f33e70ef7fe15f3d03871cc3a0ab4dd2521a6dc
-- 
2.43.0

[Message part 3 (message/rfc822, inline)]

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 74119-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-netid.
Date: Fri, 01 Nov 2024 12:29:06 +0100

Applied, thank you!

-- 
Ricardo

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