GNU bug report logs - #74118
[PATCH] gnu: Add r-raceid.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add r-raceid.
Date: Wed, 30 Oct 2024 19:08:31 +0000

* gnu/packages/cran.scm (r-raceid): New variable.

Change-Id: I337463c66040179f5a4a1622fb759a87ebd2344a
---
 gnu/packages/cran.scm | 47 +++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 47 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6c0861509d..1c2efc6b4c 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -13107,6 +13107,53 @@ (define-public r-shinyace
 environment within Shiny.")
     (license license:expat)))
 
+(define-public r-raceid
+  (package
+    (name "r-raceid")
+    (version "0.3.6")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "RaceID" version))
+       (sha256
+        (base32 "0zqas0dfsvcbjzv2b83zy13pxyzfhh81xrfbzxq8a7ykk0nyrx26"))))
+    (properties `((upstream-name . "RaceID")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-cluster
+                             r-coop
+                             r-fateid
+                             r-fnn
+                             r-fpc
+                             r-ggplot2
+                             r-harmony
+                             r-ica
+                             r-igraph
+                             r-irlba
+                             r-leiden
+                             r-locfit
+                             r-mass
+                             r-matrix
+                             r-matrixstats
+                             r-pheatmap
+                             r-princurve
+                             r-quadprog
+                             r-randomforest
+                             r-rcolorbrewer
+                             r-rcpp
+                             r-rtsne
+                             r-runner
+                             r-umap
+                             r-vegan))
+    (native-inputs (list r-knitr))
+    (home-page "https://cran.r-project.org/package=RaceID")
+    (synopsis
+     "Algorithm for inferring cell types from single-cell RNA-seq data")
+    (description
+     "This tool provides an algorithm to identify rare cell types in single-cell data.
+It also identifies abundant cell types.  The method is based on transcript
+counts obtained with unique molecular identifies.")
+    (license license:gpl3)))
+
 (define-public r-rafalib
   (package
     (name "r-rafalib")

base-commit: d6f775c30c6f47e174f6110d1089edc6315600e4
prerequisite-patch-id: 54292fa0b75533f02730e2da44993ad685d4a432
prerequisite-patch-id: 360575ef7e49c4e4e6b52644964df061856aee57
prerequisite-patch-id: 3904682af2961b8cb06ced06ab62c60604114dad
prerequisite-patch-id: 0e861c88ccc360c3a1bcd0ce92d90a9aeb1455c0
-- 
2.43.0

Message #10 received at 74118-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 74118-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-raceid.
Date: Fri, 01 Nov 2024 12:28:40 +0100

Applied, thanks!

-- 
Ricardo

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