GNU bug report logs - #69273
[PATCH] gnu: python-ega-download-client: Update to 5.1.0.

Previous Next

Full log

View this message in rfc822 format

From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: nafkhamdc <navid.afkhami <at> mdc-berlin.de>
Subject: bug#69273: closed (Close)
Date: Thu, 07 Mar 2024 18:39:02 +0000

[Message part 1 (text/plain, inline)]

Your bug report

#69273: [PATCH] gnu: python-ega-download-client: Update to 5.1.0.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 69273 <at> debbugs.gnu.org.

-- 
69273: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=69273
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: Andreas Enge <andreas <at> enge.fr>
To: 69273-done <at> debbugs.gnu.org
Subject: Close
Date: Thu, 7 Mar 2024 19:37:21 +0100

The patch does not update the package, we are already at this version.
Also it does not actually apply.

Actually it looks as if the tests to be disabled by this patch have
already been disabled in a different commit.

So I am closing this bug, thanks!

Andreas

[Message part 3 (message/rfc822, inline)]

From: nafkhamdc <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: nafkhamdc <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH] gnu: python-ega-download-client: Update to 5.1.0.
Date: Mon, 19 Feb 2024 15:42:22 +0000

* gnu/packages/bioinformatics.scm (python-ega-download-client): Update to 5.1.0.

Change-Id: I010c3a0e7cb69184b72e8b13bad04ff2fd364f5a
---
 gnu/packages/bioinformatics.scm | 26 ++++++++++++++------------
 1 file changed, 14 insertions(+), 12 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 85507b6c15..00a20aa4fc 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2541,18 +2541,20 @@ (define-public python-ega-download-client
     (build-system pyproject-build-system)
     (arguments
      (list
-      #:test-flags
-      '(list "-k"
-             ;; These tests fail because they require internet access.
-             (string-append "not test_download.py"
-                            " and not test_htsget.py"
-                            " and not test_commands.py"))
-      #:phases
-      '(modify-phases %standard-phases
-         (add-after 'unpack 'relax-requirements
-           (lambda _
-             (substitute* "setup.py"
-               (("==") ">=")))))))
+      #:test-flags '(list "-k"
+                          ;; These tests fail because they require internet access.
+                          (string-append "not test_download.py"
+                                         " and not test_htsget.py"
+                                         " and not test_commands.py"
+                          ;; The following 2 tests are failing with MaxRetriesReachedError
+                                         " and not test_download_file.py"
+                                         " and not test_download_file.py"))
+      #:phases '(modify-phases %standard-phases
+                  (add-after 'unpack 'relax-requirements
+                    (lambda _
+                      (substitute* "setup.py"
+                        (("==")
+                         ">=")))))))
     (propagated-inputs (list python-htsget python-psutil python-requests
                              python-tqdm python-urllib3))
     (native-inputs (list python-coverage python-pytest python-pyfakefs

base-commit: 052ef145215d45e1fe0e179df3b8c9626e021c2b
-- 
2.34.1

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.