GNU bug report logs - #69273
[PATCH] gnu: python-ega-download-client: Update to 5.1.0.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: nafkhamdc <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: nafkhamdc <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH] gnu: python-ega-download-client: Update to 5.1.0.
Date: Mon, 19 Feb 2024 15:42:22 +0000

* gnu/packages/bioinformatics.scm (python-ega-download-client): Update to 5.1.0.

Change-Id: I010c3a0e7cb69184b72e8b13bad04ff2fd364f5a
---
 gnu/packages/bioinformatics.scm | 26 ++++++++++++++------------
 1 file changed, 14 insertions(+), 12 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 85507b6c15..00a20aa4fc 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2541,18 +2541,20 @@ (define-public python-ega-download-client
     (build-system pyproject-build-system)
     (arguments
      (list
-      #:test-flags
-      '(list "-k"
-             ;; These tests fail because they require internet access.
-             (string-append "not test_download.py"
-                            " and not test_htsget.py"
-                            " and not test_commands.py"))
-      #:phases
-      '(modify-phases %standard-phases
-         (add-after 'unpack 'relax-requirements
-           (lambda _
-             (substitute* "setup.py"
-               (("==") ">=")))))))
+      #:test-flags '(list "-k"
+                          ;; These tests fail because they require internet access.
+                          (string-append "not test_download.py"
+                                         " and not test_htsget.py"
+                                         " and not test_commands.py"
+                          ;; The following 2 tests are failing with MaxRetriesReachedError
+                                         " and not test_download_file.py"
+                                         " and not test_download_file.py"))
+      #:phases '(modify-phases %standard-phases
+                  (add-after 'unpack 'relax-requirements
+                    (lambda _
+                      (substitute* "setup.py"
+                        (("==")
+                         ">=")))))))
     (propagated-inputs (list python-htsget python-psutil python-requests
                              python-tqdm python-urllib3))
     (native-inputs (list python-coverage python-pytest python-pyfakefs

base-commit: 052ef145215d45e1fe0e179df3b8c9626e021c2b
-- 
2.34.1

Message #10 received at 69273-done <at> debbugs.gnu.org (full text, mbox):

From: Andreas Enge <andreas <at> enge.fr>
To: 69273-done <at> debbugs.gnu.org
Subject: Close
Date: Thu, 7 Mar 2024 19:37:21 +0100

The patch does not update the package, we are already at this version.
Also it does not actually apply.

Actually it looks as if the tests to be disabled by this patch have
already been disabled in a different commit.

So I am closing this bug, thanks!

Andreas

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