GNU bug report logs -
#68313
Build hdf5-parallel-openmpi.powerpc64le-linux on master is broken.
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Your message dated Mon, 19 Aug 2024 12:37:27 +0200
with message-id <871q2kx0go.fsf <at> gnu.org>
and subject line Re: [bug#72071] [PATCH 0/2] A clean series of patches
has caused the debbugs.gnu.org bug report #68313,
regarding Build hdf5-parallel-openmpi.powerpc64le-linux on master is broken.
to be marked as done.
(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)
--
68313: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=68313
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems
[Message part 2 (message/rfc822, inline)]
Hello,
cuirass <at> gnu.org (Cuirass) writes:
> <p>The build <b>hdf5-parallel-openmpi.powerpc64le-linux</b> for specification <b>master</b>
> is broken. You can find the detailed information about this build <a
> href="https://ci.guix.gnu.org/build/3175009/details">here</a>.</p>
>
> https://ci.guix.gnu.org/build/3175009/details
Sample output:
--8<---------------cut here---------------start------------->8---
Atomicity Test Failed Process 4: read_buf[2038] is 5, should be 0
Atomicity Test Failed Process 4: read_buf[2039] is 5, should be 0
Atomicity Test Failed Process 4: read_buf[2040] is 5, should be 0
Atomicity Test Failed Process 4: read_buf[2041] is 5, should be 0
Atomicity Test Failed Process 4: read_buf[2042] is 5, should be 0
Atomicity Test Failed Process 4: read_buf[2043] is 5, should be 0
Atomicity Test Failed Process 4: read_buf[2044] is 5, should be 0
Atomicity Test Failed Process 4: read_buf[2045] is 5, should be 0
Atomicity Test Failed Process 4: read_buf[2046] is 5, should be 0
Atomicity Test Failed Process 4: read_buf[2047] is 5, should be 0
Testing -- Store Dense Attributes (denseattr)
Testing -- Store Dense Attributes (denseattr)
Testing -- Store Dense Attributes (denseattr)
Testing -- Store Dense Attributes (denseattr)
Testing -- Store Dense Attributes (denseattr)
Testing -- Store Dense Attributes (denseattr)
Testing -- Collective Metadata read with some ranks having no selection (noselcollmdread)
Testing -- Collective Metadata read with some ranks having no selection (noselcollmdread)
Testing -- Collective Metadata read with some ranks having no selection (noselcollmdread)
Testing -- Collective Metadata read with some ranks having no selection (noselcollmdread)
Testing -- Collective Metadata read with some ranks having no selection (noselcollmdread)
Testing -- Collective Metadata read with some ranks having no selection (noselcollmdread)
Testing -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read)
Testing -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read)
Testing -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read)
Testing -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read)
Testing -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read)
Testing -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read)
Testing -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read)
Testing -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read)
Testing -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read)
Testing -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read)
Testing -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read)
Testing -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read)
All tests were successful.
All tests were successful.
All tests were successful.
All tests were successful.
All tests were successful.
All tests were successful.
===================================
***PHDF5 tests detected 1040 errors***
===================================
--8<---------------cut here---------------end--------------->8---
--
Thanks,
Maxim
[Message part 3 (message/rfc822, inline)]
Hi Luca,
Luca Cirrottola <luca.cirrottola <at> inria.fr> skribis:
> Hello Ludo', following your suggestion, I have implemented a simpler
> solution that just skips off the problematic test (without moving
> around files). I send a new patch series with the full modifications
> to be applied to the recipe, containing one commit for the package
> version update, and one commit for skipping the test.
>
> Let me know if it looks better (no pressure).
>
> Thanks,
> Luca
>
> Luca Cirrottola (2):
> Solve issue https://issues.guix.gnu.org/68313 by updating HDF5 version
> to 1.14.3 (containing the official fix
> https://github.com/HDFGroup/hdf5/pull/3421).
> Skip test_check_version since the patch-settings phase needs to modify
> the test reference file.
I reorganized the changes a bit; in particular, since skipping the test
is necessary for 1.14.3 to build, I squashed the upgrade and the test
skip in the same commit.
Also, the test change would break hdf <at> 1.8, so I moved that to hdf <at> 1.14.
The result is:
84c62cf166 * gnu: hdf5-parallel-openmpi: Update to 1.14.x.
832f2bcb92 * gnu: hdf5 <at> 1.14: Update to 1.14.3.
Tested with:
./pre-inst-env guix build --no-grafts \
hdf5 <at> 1.8 hdf5 <at> 1.14 hdf5-parallel-openmpi hdf5 <at> 1.10
Thanks!
Ludo’.
This bug report was last modified 272 days ago.
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