GNU bug report logs - #68313
Build hdf5-parallel-openmpi.powerpc64le-linux on master is broken.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Maxim Cournoyer <maxim.cournoyer <at> gmail.com>
To: bug-guix <bug-guix <at> gnu.org>
Subject: Re: Build hdf5-parallel-openmpi.powerpc64le-linux on master is broken.
Date: Sun, 07 Jan 2024 22:19:15 -0500

Hello,

cuirass <at> gnu.org (Cuirass) writes:

> <p>The build <b>hdf5-parallel-openmpi.powerpc64le-linux</b> for specification <b>master</b>
> is broken. You can find the detailed information about this build <a
> href="https://ci.guix.gnu.org/build/3175009/details">here</a>.</p>
>
> https://ci.guix.gnu.org/build/3175009/details

Sample output:

--8<---------------cut here---------------start------------->8---
Atomicity Test Failed Process 4: read_buf[2038] is 5, should be 0
Atomicity Test Failed Process 4: read_buf[2039] is 5, should be 0
Atomicity Test Failed Process 4: read_buf[2040] is 5, should be 0
Atomicity Test Failed Process 4: read_buf[2041] is 5, should be 0
Atomicity Test Failed Process 4: read_buf[2042] is 5, should be 0
Atomicity Test Failed Process 4: read_buf[2043] is 5, should be 0
Atomicity Test Failed Process 4: read_buf[2044] is 5, should be 0
Atomicity Test Failed Process 4: read_buf[2045] is 5, should be 0
Atomicity Test Failed Process 4: read_buf[2046] is 5, should be 0
Atomicity Test Failed Process 4: read_buf[2047] is 5, should be 0
Testing  -- Store Dense Attributes (denseattr) 
Testing  -- Store Dense Attributes (denseattr) 
Testing  -- Store Dense Attributes (denseattr) 
Testing  -- Store Dense Attributes (denseattr) 
Testing  -- Store Dense Attributes (denseattr) 
Testing  -- Store Dense Attributes (denseattr) 
Testing  -- Collective Metadata read with some ranks having no selection (noselcollmdread) 
Testing  -- Collective Metadata read with some ranks having no selection (noselcollmdread) 
Testing  -- Collective Metadata read with some ranks having no selection (noselcollmdread) 
Testing  -- Collective Metadata read with some ranks having no selection (noselcollmdread) 
Testing  -- Collective Metadata read with some ranks having no selection (noselcollmdread) 
Testing  -- Collective Metadata read with some ranks having no selection (noselcollmdread) 
Testing  -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read) 
Testing  -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read) 
Testing  -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read) 
Testing  -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read) 
Testing  -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read) 
Testing  -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read) 
Testing  -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read) 
Testing  -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read) 
Testing  -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read) 
Testing  -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read) 
Testing  -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read) 
Testing  -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read) 


All tests were successful. 



All tests were successful. 



All tests were successful. 



All tests were successful. 



All tests were successful. 



All tests were successful. 

===================================
***PHDF5 tests detected 1040 errors***
===================================
--8<---------------cut here---------------end--------------->8---

-- 
Thanks,
Maxim

Message #10 received at 68313-done <at> debbugs.gnu.org (full text, mbox):

From: Ludovic Courtès <ludovic.courtes <at> inria.fr>
To: Luca Cirrottola <luca.cirrottola <at> inria.fr>
Cc: 68313-done <at> debbugs.gnu.org, 72071-done <at> debbugs.gnu.org
Subject: Re: [bug#72071] [PATCH 0/2] A clean series of patches
Date: Mon, 19 Aug 2024 12:37:27 +0200

Hi Luca,

Luca Cirrottola <luca.cirrottola <at> inria.fr> skribis:

> Hello Ludo', following your suggestion, I have implemented a simpler
> solution that just skips off the problematic test (without moving
> around files). I send a new patch series with the full modifications
> to be applied to the recipe, containing one commit for the package
> version update, and one commit for skipping the test.
>
> Let me know if it looks better (no pressure).
>
> Thanks,
> Luca
>
> Luca Cirrottola (2):
>   Solve issue https://issues.guix.gnu.org/68313 by updating HDF5 version
>     to 1.14.3 (containing the official fix
>     https://github.com/HDFGroup/hdf5/pull/3421).
>   Skip test_check_version since the patch-settings phase needs to modify
>     the test reference file.

I reorganized the changes a bit; in particular, since skipping the test
is necessary for 1.14.3 to build, I squashed the upgrade and the test
skip in the same commit.

Also, the test change would break hdf <at> 1.8, so I moved that to hdf <at> 1.14.

The result is:

  84c62cf166 * gnu: hdf5-parallel-openmpi: Update to 1.14.x.
  832f2bcb92 * gnu: hdf5 <at> 1.14: Update to 1.14.3.

Tested with:

  ./pre-inst-env guix build --no-grafts \
    hdf5 <at> 1.8 hdf5 <at> 1.14 hdf5-parallel-openmpi hdf5 <at> 1.10

Thanks!

Ludo’.

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