GNU bug report logs - #57005
PETSc is not reproducible

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Message #11 received at 57005 <at> debbugs.gnu.org (full text, mbox):

From: Lars Bilke <lars.bilke <at> ufz.de>
To: 57005 <at> debbugs.gnu.org
Subject: Re: [PATCH v1] gnu: petsc: scrub build machine specifics
Date: Thu, 29 Feb 2024 11:00:19 +0100

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This patch makes these files deterministic:

- petscmachineinfo.h
- petscvariables

Unfortunately libpetsc.so.3.16.1 still differs between builds, see e.g. this diffoscope output:

https://jsfiddle.net/dLx15obp/show (click on run)

Maybe someone has an idea how to also fix the library?

Sincerely,
Lars

On 29 Feb 2024, at 10:46, Lars Bilke wrote:

> 'Libraries compiled on' does not have to be removed since PETSc 3.9:
>
> https: //gitlab.com/petsc/petsc/-/commit/a970bd748978a4e12790be7c36b10e832ec0149f
>
> Change-Id: I41d82339e43187d7dc7e3fc189a338784c363c68
>
> ---
>  gnu/packages/maths.scm | 13 ++++++++-----
>  1 file changed, 8 insertions(+), 5 deletions(-)
>
> diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
> index 1f61ee0583..f09cbee48b 100644
> --- a/gnu/packages/maths.scm
> +++ b/gnu/packages/maths.scm
> @@ -3455,18 +3455,21 @@ (define-public petsc
>                  (substitute* "config/example_template.py"
>                    (("#!/usr/bin/env bash")
>                     (string-append "#!" (which "bash")))))))
> -          (add-after 'configure 'clean-local-references
> +          (add-after 'install 'clean-local-references
>              (lambda* (#:key outputs #:allow-other-keys)
>                (let ((out (assoc-ref outputs "out")))
>                  (substitute* (find-files "." "^petsc(conf|machineinfo).h$")
>                    ;; Prevent build directory from leaking into compiled code
>                    (((getcwd)) out)
> -                  ;; Scrub timestamp for reproducibility
> -                  ((".*Libraries compiled on.*") ""))
> +                  ;; Scrub build machine characteristic
> +                  (("Machine characteristics: Linux-[0-9]+\\.[0-9]+\\.[0-9]+")
> +                    "Machine characteristics: Linux-x.x.x"))
>                  (substitute* (find-files "." "petscvariables")
>                    ;; Do not expose build machine characteristics, set to defaults.
> -                  (("MAKE_NP = [:digit:]+") "MAKE_NP = 2")
> -                  (("NPMAX = [:digit:]+") "NPMAX = 2")))))
> +                  (("MAKE_NP = [[:digit:]]+") "MAKE_NP = 2")
> +                  (("MAKE_TEST_NP = [[:digit:]]+") "MAKE_TEST_NP = 2")
> +                  (("MAKE_LOAD = [[:digit:]]+\\.[[:digit:]]+") "MAKE_LOAD = 2.0")
> +                  (("NPMAX = [[:digit:]]+") "NPMAX = 2")))))
>            (add-after 'install 'clean-install
>              ;; Try to keep installed files from leaking build directory names.
>              (lambda* (#:key inputs outputs #:allow-other-keys)
>
> base-commit: 75bad75367fcf2c289fae3b40dbcc850f92177be
> -- 
> 2.43.0

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