GNU bug report logs - #48811
R 4.1.0 does not build

Previous Next

Full log

View this message in rfc822 format

From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: meedstrom <at> teknik.io
Subject: bug#48811: closed (Re: bug#48811: R 4.1.0 does not build)
Date: Mon, 14 Jun 2021 06:42:02 +0000

[Message part 1 (text/plain, inline)]

Your bug report

#48811: R 4.1.0 does not build

which was filed against the guix package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 48811 <at> debbugs.gnu.org.

-- 
48811: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=48811
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: zimoun <zimon.toutoune <at> gmail.com>
To: meedstrom <at> teknik.io
Cc: 48811-done <at> debbugs.gnu.org
Subject: Re: bug#48811: R 4.1.0 does not build
Date: Mon, 14 Jun 2021 08:38:41 +0200

Hi,


On Sun, 13 Jun 2021 at 09:26, meedstrom <at> teknik.io wrote:
> It builds fine now, so this fluke will remain a mystery. I don't know
> the way to check what revision of Guix I was on at the time. All the
> best! 

The command “guix pull --list-generations” gives all the versions you
used.  Except if you explicitly removed some.

Thanks, so closing.

All the best,
simon

[Message part 3 (message/rfc822, inline)]

From: meedstrom <at> teknik.io
To: bug-guix <at> gnu.org
Subject: R 4.1.0 does not build
Date: Thu, 03 Jun 2021 09:58:46 +0000

Running ~guix build r-minimal~ fails with the following messages. Sounds like it cannot find the
style file plain.bst and some math fonts; maybe upstream changed the dependencies. Or I read it
wrong and it's some other error from the make target "vignettes-no-lattice".

Let me know if it works for you and the issue's on my end.

#+begin_example
building/updating vignettes for package 'grid' ...
processing 'grid.Rnw'
Error: compiling TeX file 'grid.tex' failed with message:
Running 'texi2dvi' on 'grid.tex' failed.
BibTeX errors:
The top-level auxiliary file: grid.aux
I couldn't open style file plain.bst
---line 33 of file grid.aux
: \bibstyle{plain
: }
I'm skipping whatever remains of this command
I found no style file---while reading file grid.aux
Execution halted
building/updating vignettes for package 'parallel' ...
building/updating vignettes for package 'utils' ...
building/updating vignettes for package 'stats' ...
processing 'reshape.Rnw'
Error: compiling TeX file 'reshape.tex' failed with message:
Running 'texi2dvi' on 'reshape.tex' failed.
LaTeX errors:
! Math formula deleted: Insufficient symbol fonts.
\endtabular ->\crcr \egroup \egroup $
\egroup
l.22 \maketitle

Execution halted
make[1]: *** [Makefile:120: vignettes-no-lattice] Error 1
make[1]: Leaving directory '/tmp/guix-build-r-minimal-4.1.0.drv-0/R-4.1.0/src/library'
make: *** [Makefile:81: vignettes] Error 2
command "make" "-j" "4"
"LDFLAGS=-Wl,-rpath=/gnu/store/qsqgl8d8cn9v55z085jlpxarbf1zss8i-r-minimal-4.1.0/lib/R/lib"
"PKG_BUILT_STAMP=1970-01-01" failed with status 2
#+end_example

--
Martin Edström

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.