GNU bug report logs - #39775
guix pull - error: lmdbxx: unbound variable

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Martin Flack <martin.flack <at> gmail.com>
To: bug-guix <at> gnu.org
Subject: guix pull - error: lmdbxx: unbound variable
Date: Mon, 24 Feb 2020 22:43:25 -0700

[Message part 1 (text/plain, inline)]

Today I ran guix pull which seemed to culminate in a strange guix/ui.scm
error message:

After some compiling I got:
...
The following derivations will be built:
   /gnu/store/8vz5gvrzdjlamnc1yp12whb8rhdbjif0-profile.drv
   /gnu/store/scyl68mw7lvhqixal6n3sc6mz3c5mq42-guix-0d197a63d.drv
   /gnu/store/1slvq9biga5w0vxw9sbfprlhp8pghqrf-guix-0d197a63d-modules.drv
   /gnu/store/4s06i28x7j4zwrgim0kybxgpihmvh5y7-guix-packages-modules.drv
   /gnu/store/bv94gciwr7ididw95353jy9zplk5fz6r-guix-packages.drv
   /gnu/store/6d7p4nsqk5s5286khhkr6knwwipb4igj-guix-extra.drv
   /gnu/store/ivbyq110sxmkd7xg5j9ydpdyr82nph12-guix-core-source.drv
   /gnu/store/y7h0mimx8qzilm3dy71rsbwnvbc6xija-guix-core.drv
   /gnu/store/m0nzbh77nzmp9adwj9apz1zaj29s3f63-guix-packages-base.drv
   /gnu/store/8ilihcskx52d0im5siyfimwfxg4wrskw-guix-system-modules.drv
   /gnu/store/a8284jcjgxsagm63395askn704zwsl3i-guix-system.drv
   /gnu/store/aiwqh9m0m56i6pxn6pkidip5rv7yyir7-guix-cli-modules.drv
   /gnu/store/8h3k938vrc5mm250m9z7aq2fpc21vs01-guix-cli.drv
   /gnu/store/cps608k6dy4ynkd0nnsn5s3m83mf5lvr-guix-core-modules.drv
   /gnu/store/fz8vldhr01k5100x5qaa0wdn93y4jqrd-guix-system-tests-modules.drv
   /gnu/store/fpqgrp5h6j81732c7qwqv9wd0qd8fhjw-guix-system-tests.drv

 /gnu/store/lvxdlanm440h1y1dvims2jj2rxxdfxa2-guix-packages-base-modules.drv
   /gnu/store/pk526jdflsa61y1bi71pljdqjplv6hs6-guix-config-modules.drv
   /gnu/store/h7nn3v8809bpg2nzvl8v8ibmvg2k8y3n-guix-config-source.drv
   /gnu/store/amajl0hv6saczg76nsd1hp90g9l8kjnm-config.scm.drv
   /gnu/store/mqsrbrh66gdwcqb84wk1m24c5a7bx01s-guix-config.drv
   /gnu/store/ww5i9n7iyn0p4agks44cm2qhq2czxrlx-guix-extra-modules.drv
   /gnu/store/hvms85pv6kl2jypqxa4ns1xrhk6xwm0n-guix-manual.drv
   /gnu/store/naz2w1h501bjapggaz46if0fcf5am7df-guix-translated-texinfo.drv
   /gnu/store/p3va25wpkly500w01fm9qvabnfbhzwg0-guix-command.drv
   /gnu/store/ab3a8sg6b3q3vixads1xly5i26cjkgv9-guix-module-union.drv
   /gnu/store/cklvnm977bq3ag2paiym6gbkrsf0vvgn-guix-locale-guix.drv
   /gnu/store/x0xh8p2zrf94kx75g4y2rs6q4wnffq87-guix-daemon.drv
   /gnu/store/75shnmym7m2v9wr0askjcqpmfc34pzm6-inferior-script.scm.drv
   /gnu/store/mfd7sng5bag37aj4rmifr25xz9b4s9f1-profile.drv
The following grafts will be made:
   /gnu/store/hqciyasnzqsrl0qynqm5v5724z3pv1ki-guile3.0-ssh-0.12.0.drv
   /gnu/store/dmjw1h4iw9z0c582y9hn48y7s10a1lph-libssh-0.9.3.drv
   /gnu/store/n81kdyyhidjs9c388c9rf2ix2f9gxgj2-guile3.0-git-0.3.0.drv
   /gnu/store/yahyfa3mysc3vjzrybl68qgffhix8r5a-libgit2-0.28.4.drv

 /gnu/store/ixpn7nfyypsm3gacapbbnx2apysdkwlw-guix-daemon-1.0.1-13.50299ad.drv
The following profile hooks will be built:
   /gnu/store/2z4iv79sgx84yfaib430fv7siynjszfg-manual-database.drv
   /gnu/store/7dblw0w81pwlnyr1n52szdf5w482lik9-info-dir.drv
   /gnu/store/8ivx9xfx2dzbir6619m82rnhiy13cafh-ca-certificate-bundle.drv
   /gnu/store/mn7sqip3zj0f6y3qhv6f1c39hhb8cv4m-fonts-dir.drv
   /gnu/store/vjwc21gsnzfm3n7lk00qmfmxwhsyaz5k-guix-package-cache.drv
applying 1 graft for
/gnu/store/ixpn7nfyypsm3gacapbbnx2apysdkwlw-guix-daemon-1.0.1-13.50299ad.drv...
successfully built
/gnu/store/ixpn7nfyypsm3gacapbbnx2apysdkwlw-guix-daemon-1.0.1-13.50299ad.drv
building /gnu/store/amajl0hv6saczg76nsd1hp90g9l8kjnm-config.scm.drv...
successfully built
/gnu/store/amajl0hv6saczg76nsd1hp90g9l8kjnm-config.scm.drv
building /gnu/store/ivbyq110sxmkd7xg5j9ydpdyr82nph12-guix-core-source.drv...
successfully built
/gnu/store/ivbyq110sxmkd7xg5j9ydpdyr82nph12-guix-core-source.drv
building
/gnu/store/h7nn3v8809bpg2nzvl8v8ibmvg2k8y3n-guix-config-source.drv...
successfully built
/gnu/store/h7nn3v8809bpg2nzvl8v8ibmvg2k8y3n-guix-config-source.drv
building /gnu/store/y7h0mimx8qzilm3dy71rsbwnvbc6xija-guix-core.drv...
successfully built /gnu/store/y7h0mimx8qzilm3dy71rsbwnvbc6xija-guix-core.drv
building /gnu/store/mqsrbrh66gdwcqb84wk1m24c5a7bx01s-guix-config.drv...
successfully built
/gnu/store/mqsrbrh66gdwcqb84wk1m24c5a7bx01s-guix-config.drv
building
/gnu/store/cps608k6dy4ynkd0nnsn5s3m83mf5lvr-guix-core-modules.drv...
successfully built
/gnu/store/cps608k6dy4ynkd0nnsn5s3m83mf5lvr-guix-core-modules.drv
building
/gnu/store/pk526jdflsa61y1bi71pljdqjplv6hs6-guix-config-modules.drv...
successfully built
/gnu/store/pk526jdflsa61y1bi71pljdqjplv6hs6-guix-config-modules.drv
building /gnu/store/cklvnm977bq3ag2paiym6gbkrsf0vvgn-guix-locale-guix.drv...
successfully built
/gnu/store/cklvnm977bq3ag2paiym6gbkrsf0vvgn-guix-locale-guix.drv
building
/gnu/store/naz2w1h501bjapggaz46if0fcf5am7df-guix-translated-texinfo.drv...
successfully built
/gnu/store/naz2w1h501bjapggaz46if0fcf5am7df-guix-translated-texinfo.drv
applying 2 grafts for
/gnu/store/yahyfa3mysc3vjzrybl68qgffhix8r5a-libgit2-0.28.4.drv...
successfully built
/gnu/store/yahyfa3mysc3vjzrybl68qgffhix8r5a-libgit2-0.28.4.drv
building /gnu/store/hvms85pv6kl2jypqxa4ns1xrhk6xwm0n-guix-manual.drv...
successfully built
/gnu/store/hvms85pv6kl2jypqxa4ns1xrhk6xwm0n-guix-manual.drv
applying 1 graft for
/gnu/store/n81kdyyhidjs9c388c9rf2ix2f9gxgj2-guile3.0-git-0.3.0.drv...
successfully built
/gnu/store/n81kdyyhidjs9c388c9rf2ix2f9gxgj2-guile3.0-git-0.3.0.drv
applying 1 graft for
/gnu/store/dmjw1h4iw9z0c582y9hn48y7s10a1lph-libssh-0.9.3.drv...
successfully built
/gnu/store/dmjw1h4iw9z0c582y9hn48y7s10a1lph-libssh-0.9.3.drv
applying 1 graft for
/gnu/store/hqciyasnzqsrl0qynqm5v5724z3pv1ki-guile3.0-ssh-0.12.0.drv...
successfully built
/gnu/store/hqciyasnzqsrl0qynqm5v5724z3pv1ki-guile3.0-ssh-0.12.0.drv
building /gnu/store/6d7p4nsqk5s5286khhkr6knwwipb4igj-guix-extra.drv...
successfully built
/gnu/store/6d7p4nsqk5s5286khhkr6knwwipb4igj-guix-extra.drv
building
/gnu/store/ww5i9n7iyn0p4agks44cm2qhq2czxrlx-guix-extra-modules.drv...
successfully built
/gnu/store/ww5i9n7iyn0p4agks44cm2qhq2czxrlx-guix-extra-modules.drv
building
/gnu/store/m0nzbh77nzmp9adwj9apz1zaj29s3f63-guix-packages-base.drv...
successfully built
/gnu/store/m0nzbh77nzmp9adwj9apz1zaj29s3f63-guix-packages-base.drv
building
/gnu/store/lvxdlanm440h1y1dvims2jj2rxxdfxa2-guix-packages-base-modules.drv...
successfully built
/gnu/store/lvxdlanm440h1y1dvims2jj2rxxdfxa2-guix-packages-base-modules.drv
building /gnu/store/bv94gciwr7ididw95353jy9zplk5fz6r-guix-packages.drv...
successfully built
/gnu/store/bv94gciwr7ididw95353jy9zplk5fz6r-guix-packages.drv
building
/gnu/store/4s06i28x7j4zwrgim0kybxgpihmvh5y7-guix-packages-modules.drv...
successfully built
/gnu/store/4s06i28x7j4zwrgim0kybxgpihmvh5y7-guix-packages-modules.drv
building /gnu/store/a8284jcjgxsagm63395askn704zwsl3i-guix-system.drv...
successfully built
/gnu/store/a8284jcjgxsagm63395askn704zwsl3i-guix-system.drv
building /gnu/store/8h3k938vrc5mm250m9z7aq2fpc21vs01-guix-cli.drv...
successfully built /gnu/store/8h3k938vrc5mm250m9z7aq2fpc21vs01-guix-cli.drv
building
/gnu/store/8ilihcskx52d0im5siyfimwfxg4wrskw-guix-system-modules.drv...
successfully built
/gnu/store/8ilihcskx52d0im5siyfimwfxg4wrskw-guix-system-modules.drv
building /gnu/store/aiwqh9m0m56i6pxn6pkidip5rv7yyir7-guix-cli-modules.drv...
successfully built
/gnu/store/aiwqh9m0m56i6pxn6pkidip5rv7yyir7-guix-cli-modules.drv
building
/gnu/store/fpqgrp5h6j81732c7qwqv9wd0qd8fhjw-guix-system-tests.drv...
successfully built
/gnu/store/fpqgrp5h6j81732c7qwqv9wd0qd8fhjw-guix-system-tests.drv
building
/gnu/store/fz8vldhr01k5100x5qaa0wdn93y4jqrd-guix-system-tests-modules.drv...
successfully built
/gnu/store/fz8vldhr01k5100x5qaa0wdn93y4jqrd-guix-system-tests-modules.drv
building
/gnu/store/1slvq9biga5w0vxw9sbfprlhp8pghqrf-guix-0d197a63d-modules.drv...
successfully built
/gnu/store/1slvq9biga5w0vxw9sbfprlhp8pghqrf-guix-0d197a63d-modules.drv
building
/gnu/store/ab3a8sg6b3q3vixads1xly5i26cjkgv9-guix-module-union.drv...
successfully built
/gnu/store/ab3a8sg6b3q3vixads1xly5i26cjkgv9-guix-module-union.drv
building /gnu/store/p3va25wpkly500w01fm9qvabnfbhzwg0-guix-command.drv...
successfully built
/gnu/store/p3va25wpkly500w01fm9qvabnfbhzwg0-guix-command.drv
building /gnu/store/x0xh8p2zrf94kx75g4y2rs6q4wnffq87-guix-daemon.drv...
successfully built
/gnu/store/x0xh8p2zrf94kx75g4y2rs6q4wnffq87-guix-daemon.drv
building /gnu/store/scyl68mw7lvhqixal6n3sc6mz3c5mq42-guix-0d197a63d.drv...
successfully built
/gnu/store/scyl68mw7lvhqixal6n3sc6mz3c5mq42-guix-0d197a63d.drv
building CA certificate bundle...
successfully built
/gnu/store/8ivx9xfx2dzbir6619m82rnhiy13cafh-ca-certificate-bundle.drv
building fonts directory...
successfully built /gnu/store/mn7sqip3zj0f6y3qhv6f1c39hhb8cv4m-fonts-dir.drv
building directory of Info manuals...
successfully built /gnu/store/7dblw0w81pwlnyr1n52szdf5w482lik9-info-dir.drv
building database for manual pages...
successfully built
/gnu/store/2z4iv79sgx84yfaib430fv7siynjszfg-manual-database.drv
building /gnu/store/mfd7sng5bag37aj4rmifr25xz9b4s9f1-profile.drv...
successfully built /gnu/store/mfd7sng5bag37aj4rmifr25xz9b4s9f1-profile.drv
building
/gnu/store/75shnmym7m2v9wr0askjcqpmfc34pzm6-inferior-script.scm.drv...
successfully built
/gnu/store/75shnmym7m2v9wr0askjcqpmfc34pzm6-inferior-script.scm.drv
building package cache...
successfully built
/gnu/store/vjwc21gsnzfm3n7lk00qmfmxwhsyaz5k-guix-package-cache.drv
building /gnu/store/8vz5gvrzdjlamnc1yp12whb8rhdbjif0-profile.drv...
successfully built /gnu/store/8vz5gvrzdjlamnc1yp12whb8rhdbjif0-profile.drv
1 package in profile

Backtrace:
           1 (primitive-load "/home/mflack/.config/guix/current/bin/…")
In guix/ui.scm:
  1824:12  0 (run-guix-command _ . _)

guix/ui.scm:1824:12: In procedure run-guix-command:
error: lmdbxx: unbound variable


-- 

Martin

[Message part 2 (text/html, inline)]

Message #8 received at 39775 <at> debbugs.gnu.org (full text, mbox):

From: zimoun <zimon.toutoune <at> gmail.com>
To: Martin Flack <martin.flack <at> gmail.com>
Cc: 39775 <at> debbugs.gnu.org
Subject: Re: bug#39775: guix pull - error: lmdbxx: unbound variable
Date: Tue, 25 Feb 2020 16:13:32 +0100

Dear,

On Tue, 25 Feb 2020 at 06:45, Martin Flack <martin.flack <at> gmail.com> wrote:

> 1 package in profile
>
> Backtrace:
>            1 (primitive-load "/home/mflack/.config/guix/current/bin/…")
> In guix/ui.scm:
>   1824:12  0 (run-guix-command _ . _)
>
> guix/ui.scm:1824:12: In procedure run-guix-command:
> error: lmdbxx: unbound variable

Could you provide the output of "guix describe" ? I mean from which
commit do you pull?

(I am not seeing this error.)


All the best,s
simon

Message #11 received at 39775 <at> debbugs.gnu.org (full text, mbox):

From: Martin Flack <martin.flack <at> gmail.com>
To: zimoun <zimon.toutoune <at> gmail.com>
Cc: 39775 <at> debbugs.gnu.org
Subject: Re: bug#39775: guix pull - error: lmdbxx: unbound variable
Date: Tue, 25 Feb 2020 10:29:18 -0700

[Message part 1 (text/plain, inline)]

Ah, you can close this, sorry!

I think the problem was I had copied gnu/packages/databases.scm to a
custom GUIX_PACKAGE_PATH in order to apply a patch from the mailing lists,
without keeping it up-to-date with the rest of the contents of the file as
guix had further commits over time. I know there must be a way to do that
more cleanly where (a) you only override the necessary packages and (b)
somehow it becomes moot or you get notified when that package is upgraded
in mainline; but I have not yet learned how to do that! (Any tutorial?)

Cheers,
Martin



On Tue, Feb 25, 2020 at 8:13 AM zimoun <zimon.toutoune <at> gmail.com> wrote:

> Dear,
>
> On Tue, 25 Feb 2020 at 06:45, Martin Flack <martin.flack <at> gmail.com> wrote:
>
> > 1 package in profile
> >
> > Backtrace:
> >            1 (primitive-load "/home/mflack/.config/guix/current/bin/…")
> > In guix/ui.scm:
> >   1824:12  0 (run-guix-command _ . _)
> >
> > guix/ui.scm:1824:12: In procedure run-guix-command:
> > error: lmdbxx: unbound variable
>
> Could you provide the output of "guix describe" ? I mean from which
> commit do you pull?
>
> (I am not seeing this error.)
>
>
> All the best,s
> simon
>


-- 

Martin

[Message part 2 (text/html, inline)]

Message #16 received at 39775-done <at> debbugs.gnu.org (full text, mbox):

From: zimoun <zimon.toutoune <at> gmail.com>
To: Martin Flack <martin.flack <at> gmail.com>
Cc: 39775-done <at> debbugs.gnu.org
Subject: Re: bug#39775: guix pull - error: lmdbxx: unbound variable
Date: Tue, 25 Feb 2020 18:35:41 +0100

Dear,

On Tue, 25 Feb 2020 at 18:29, Martin Flack <martin.flack <at> gmail.com> wrote:

> I think the problem was I had copied gnu/packages/databases.scm to a custom GUIX_PACKAGE_PATH in order to apply a patch from the mailing lists, without keeping it up-to-date with the rest of the contents of the file as guix had further commits over time. I know there must be a way to do that more cleanly where (a) you only override the necessary packages and (b) somehow it becomes moot or you get notified when that package is upgraded in mainline; but I have not yet learned how to do that! (Any tutorial?)

Maybe what you are looking for is channel and manifest.
Please ask on help-guix or IRC more details. :-)
And I do not know any tutorial yet, perhaps once you solved your
problem, you could write one. ;-)


All the best,
simon

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