GNU bug report logs - #37988
[PATCH 0/6] Add flowWorkspace from BioConductor

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From: zimoun <zimon.toutoune <at> gmail.com>
To: 37988 <at> debbugs.gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [bug#37988] [PATCH 5/6] gnu: Add r-ncdfflow.
Date: Wed, 30 Oct 2019 11:25:30 +0100

* gnu/packages/bioconductor.scm (r-ncdfflow): New variable.
---
 gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
 1 file changed, 32 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a5c6e1ed55..2636095e0f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6228,3 +6228,35 @@ Protocol buffers 2.6.0 for other R packages to compile and link against.")
     (description "This package provides the core data structure and API to
 represent and interact with the gated cytometry data.")
     (license license:artistic2.0)))
+
+(define-public r-ncdfflow
+  (package
+    (name "r-ncdfflow")
+    (version "2.30.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "ncdfFlow" version))
+       (sha256
+        (base32
+         "02769pr4gipjdlknhk8adica7v37c9fviffv0qscrf9v5j26rxzw"))))
+    (properties
+     `((upstream-name . "ncdfFlow")))
+    (build-system r-build-system)
+    (inputs `(("zlib" ,zlib)))
+    (propagated-inputs
+     `(("r-bh" ,r-bh)
+       ("r-biobase" ,r-biobase)
+       ("r-biocgenerics" ,r-biocgenerics)
+       ("r-flowcore" ,r-flowcore)
+       ("r-flowviz" ,r-flowviz)
+       ("r-rcpp" ,r-rcpp)
+       ("r-rcpparmadillo" ,r-rcpparmadillo)
+       ("r-rhdf5lib" ,r-rhdf5lib)
+       ("r-zlibbioc" ,r-zlibbioc)))
+    (home-page "https://bioconductor.org/packages/ncdfFlow")
+    (synopsis "Storage based on HDF5 for flow cytometry data")
+    (description
+     "This package provides HDF5 storage based methods and functions for
+manipulation of flow cytometry data.")
+    (license license:artistic2.0)))
-- 
2.23.0

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