GNU bug report logs - #37988
[PATCH 0/6] Add flowWorkspace from BioConductor

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From: zimoun <zimon.toutoune <at> gmail.com>
To: 37988 <at> debbugs.gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [bug#37988] [PATCH 3/6] gnu: Add r-rprotobuflib.
Date: Wed, 30 Oct 2019 11:25:28 +0100

* gnu/packages/bioconductor.scm (r-rprotobuflib): New variable.
---
 gnu/packages/bioconductor.scm | 39 +++++++++++++++++++++++++++++++++++
 1 file changed, 39 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 92e5d3ec0b..7c1761852c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6166,3 +6166,42 @@ data.")
     (synopsis "Visualization for flow cytometry data")
     (description "This package provides visualization tools for flow cytometry data.")
     (license license:artistic2.0)))
+
+(define-public r-rprotobuflib
+  (package
+    (name "r-rprotobuflib")
+    (version "1.6.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "RProtoBufLib" version))
+       (sha256
+        (base32
+         "1vhwxw7281n5wpg30ik3m1gwarfmj4b8cqxdvj0sck44yx24lphg"))))
+    (properties
+     `((upstream-name . "RProtoBufLib")))
+    (build-system r-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         ;; Contains unverified binaries:
+         ;; src/win/lib/{i386,x64}/libprotobuf.a
+         (add-after 'unpack 'remove-win-folder
+           (lambda _
+             (delete-file-recursively "src/win")
+             #t))
+         ;; Fix non-conventional packaging.
+         ;; The dependency to protobuf-2.6.0 is included as tgz and build
+         ;; by the R package itself.
+         (add-after 'unpack 'fix-wrong-hard-coded
+           (lambda _
+             (with-directory-excursion "src"
+               (invoke "tar" "xf" "protobuf-2.6.0.tgz"))
+             (substitute* "src/protobuf-2.6.0/configure"
+               (("#! /bin/sh") (string-append "#!" (which "sh"))))
+             #t)))))
+    (home-page "https://bioconductor.org/packages/RProtoBufLib")
+    (synopsis "C++ headers and static libraries of Protocol buffers")
+    (description "This package provides the headers and static library of
+Protocol buffers 2.6.0 for other R packages to compile and link against.")
+    (license license:bsd-3)))
-- 
2.23.0

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