GNU bug report logs - #32688
[PATCH] gnu: Add r-absim.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Leo Famulari <leo <at> famulari.name>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#32688: closed ([PATCH] gnu: Add r-absim.)
Date: Tue, 02 Oct 2018 20:19:02 +0000

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Your message dated Tue, 2 Oct 2018 16:18:00 -0400
with message-id <20181002201800.GA20264 <at> jasmine.lan>
and subject line Re: [bug#32688] [PATCH] gnu: Add r-absim.
has caused the debbugs.gnu.org bug report #32688,
regarding [PATCH] gnu: Add r-absim.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


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32688: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=32688
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From: pimi <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: pimi <madalinionel.patrascu <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add r-absim.
Date: Mon, 10 Sep 2018 20:30:57 +0200

gnu/packages/cran.scm (r-absim): New variable.
---
 gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 814439172..fd4929c0f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5564,3 +5564,31 @@ gf_density(), and so on, bring the formula interface to ggplot().  This captures
 and extends the excellent simplicity of the lattice-graphics formula interface,
 while providing the intuitive capabilities of @code{r-ggplot2}.")
     (license license:expat)))
+
+(define-public r-absim
+  (package
+    (name "r-absim")
+    (version "0.2.6")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "AbSim" version))
+       (sha256
+        (base32 "16ddjk8b6xw80ch4jis1y751i9561wdxh0gifbf15qiz3vjckq8m"))))
+    (properties `((upstream-name . "AbSim")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-ape" ,r-ape)
+       ("r-powerlaw" ,r-powerlaw)))
+    (home-page "https://cran.r-project.org/web/packages/AbSim/")
+    (synopsis "Time resolved simulations of antibody repertoires")
+    (description
+     "This package provides simulation methods for the evolution of antibody repertoires.
+  The heavy and light chain variable region of both human and C57BL/6 mice can
+be simulated in a time-dependent fashion.  Both single lineages using one set of
+V-, D-, and J-genes or full repertoires can be simulated.  The algorithm begins
+with an initial V-D-J recombination event, starting the first phylogenetic tree.
+  Upon completion, the main loop of the algorithm begins, with each iteration
+representing one simulated time step.  Various mutation events are possible at
+each time step, contributing to a diverse final repertoire.")
+    (license license:gpl2)))
-- 
2.17.1

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From: Leo Famulari <leo <at> famulari.name>
To: pimi <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 32688-done <at> debbugs.gnu.org
Subject: Re: [bug#32688] [PATCH] gnu: Add r-absim.
Date: Tue, 2 Oct 2018 16:18:00 -0400

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On Mon, Sep 10, 2018 at 08:30:57PM +0200, pimi wrote:
> gnu/packages/cran.scm (r-absim): New variable.

Thanks! Pushed as 1ddb2b5c1ca1e18924cbb969c974a0e8d8e54010

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