GNU bug report logs - #32689
Add r-quic + r-abundant

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: "MadalinIonel.Patrascu <at> mdc-berlin.de"
 <MadalinIonel.Patrascu <at> mdc-berlin.de>
To: "guix-patches <at> gnu.org" <guix-patches <at> gnu.org>
Date: Mon, 10 Sep 2018 19:27:55 +0000

Mădălin Ionel Patrașcu

System Administrator
Bioinformatics Platform
The Berlin Institute for Medical Systems Biology (BIMSB)
Max Delbrück Center (MDC)
Robert-Rössle-Straße 10
House 87, room 1.10
13125 Berlin, Germany

Message #8 received at 32689 <at> debbugs.gnu.org (full text, mbox):

From: pimi <madalinionel.patrascu <at> mdc-berlin.de>
To: <32689 <at> debbugs.gnu.org>
Cc: pimi <madalinionel.patrascu <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add r-quic.
Date: Mon, 10 Sep 2018 21:29:51 +0200

gnu/packages/cran.scm (r-quic): New variable.
---
 gnu/packages/cran.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index fd4929c0f..d31f1c81a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5592,3 +5592,25 @@ with an initial V-D-J recombination event, starting the first phylogenetic tree.
 representing one simulated time step.  Various mutation events are possible at
 each time step, contributing to a diverse final repertoire.")
     (license license:gpl2)))
+
+(define-public r-quic
+  (package
+    (name "r-quic")
+    (version "1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "QUIC" version))
+       (sha256
+        (base32 "021bp9xbaih60qmss015ycblbv6d1dvb1z89y93zpqqnc2qhpv3c"))))
+    (properties `((upstream-name . "QUIC")))
+    (build-system r-build-system)
+    (home-page "https://www.cs.utexas.edu/users/sustik/QUIC/")
+    (synopsis "Regularized sparse inverse covariance matrix estimation")
+    (description
+     "This package algorithm implements the l1 regularized Gaussian maximum likelihood
+estimation of the inverse of a covariance matrix.  It uses Newton's method and
+coordinate descent to solve the regularized inverse covariance matrix estimation
+problem.")
+    ;; on the home-page it is mentioned that the release is under GPLv3 or later
+    (license license:gpl3+)))
-- 
2.17.1

Message #11 received at 32689 <at> debbugs.gnu.org (full text, mbox):

From: pimi <madalinionel.patrascu <at> mdc-berlin.de>
To: <32689 <at> debbugs.gnu.org>
Cc: pimi <madalinionel.patrascu <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add r-abundant.
Date: Mon, 10 Sep 2018 21:32:57 +0200

gnu/packages/cran.scm (r-abundant): New variable.
---
 gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d31f1c81a..41d6e44ed 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5614,3 +5614,27 @@ coordinate descent to solve the regularized inverse covariance matrix estimation
 problem.")
     ;; on the home-page it is mentioned that the release is under GPLv3 or later
     (license license:gpl3+)))
+
+(define-public r-abundant
+  (package
+    (name "r-abundant")
+    (version "1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "abundant" version))
+       (sha256
+        (base32 "1m76qdmqvwpgm0sihazi2dna7cgsz9rljal18vgffb5wamwmg9k7"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-quic" ,r-quic)))
+    (home-page "https://cran.r-project.org/web/packages/abundant/")
+    (synopsis "Abundant regression and high-dimensional principal fitted components")
+    (description
+     "This package fits and predicts with the high-dimensional principal fitted components
+model.  It is demonstrated that asymptotic behavior of a class of methods for
+sufficient dimension reduction in high-dimension regressions, are consistent in
+a variety of settings, particularly in abundant regressions where most
+predictors contribute some information on the response, and oracle rates are
+possible.")
+    (license license:gpl2)))
-- 
2.17.1

Message #18 received at 32689 <at> debbugs.gnu.org (full text, mbox):

From: ludo <at> gnu.org (Ludovic Courtès)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: 32689 <at> debbugs.gnu.org
Subject: Re: control message for bug #32689
Date: Sat, 27 Oct 2018 16:38:29 +0200

Hello!

Ricardo Wurmus <rekado <at> elephly.net> skribis:

> owner 32689 !

Are you taking care of these two patches?  :-)

Thanks,
Ludo’.

Message #23 received at 32689-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Ludovic Courtès <ludo <at> gnu.org>
Cc: 32689-done <at> debbugs.gnu.org, "Patrascu,
 Madalin Ionel" <MadalinIonel.Patrascu <at> mdc-berlin.de>
Subject: Re: control message for bug #32689
Date: Sat, 27 Oct 2018 18:55:25 +0200

Ludovic Courtès <ludo <at> gnu.org> writes:

> Hello!
>
> Ricardo Wurmus <rekado <at> elephly.net> skribis:
>
>> owner 32689 !
>
> Are you taking care of these two patches?  :-)

Ouch!  This fell through the many cracks that have opened up in my life
in the past two months.  Thank you for the reminder.

I just made some minor changes, linted, and built the two packages.
Pushed with commit b509df82d.

Thanks and my apologies for taking so long!

--
Ricardo

Message #26 received at 32689-done <at> debbugs.gnu.org (full text, mbox):

From: ludo <at> gnu.org (Ludovic Courtès)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: 32689-done <at> debbugs.gnu.org, "Patrascu,
 Madalin Ionel" <MadalinIonel.Patrascu <at> mdc-berlin.de>
Subject: Re: control message for bug #32689
Date: Sun, 28 Oct 2018 23:33:38 +0100

Hi!

Ricardo Wurmus <rekado <at> elephly.net> skribis:

> Ludovic Courtès <ludo <at> gnu.org> writes:
>
>> Hello!
>>
>> Ricardo Wurmus <rekado <at> elephly.net> skribis:
>>
>>> owner 32689 !
>>
>> Are you taking care of these two patches?  :-)
>
> Ouch!  This fell through the many cracks that have opened up in my life
> in the past two months.  Thank you for the reminder.

I thought so but I wasn’t sure if the “owner” directive really meant
what I thought it meant.

> I just made some minor changes, linted, and built the two packages.
> Pushed with commit b509df82d.
>
> Thanks and my apologies for taking so long!

No problem, thank you!

Ludo’.

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