GNU bug report logs - #29221
[PATCH] java packages

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Julien Lepiller <julien <at> lepiller.eu>
To: guix-patches <at> gnu.org
Subject: [PATCH] java packages
Date: Wed, 8 Nov 2017 23:48:43 +0100

Hi,

this series add more java packages that maven eventually depends on.

java files tend to have very long names, it makes it difficult to
respect the line length limit :/

Message #8 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 01/19] gnu: Add bitshuffle.
Date: Wed,  8 Nov 2017 23:51:22 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* gnu/packages/compression.scm (bitshuffle): New variable.
---
 gnu/packages/compression.scm | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)

diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index a2bf3a186..fb3de8e07 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -19,6 +19,7 @@
 ;;; Copyright © 2017 Theodoros Foradis <theodoros <at> foradis.org>
 ;;; Copyright © 2017 Stefan Reichör <stefan <at> xsteve.at>
 ;;; Copyright © 2017 Petter <petter <at> mykolab.ch>
+;;; Copyright © 2017 Julien Lepiller <julien <at> lepiller.eu>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -53,6 +54,7 @@
   #:use-module (gnu packages check)
   #:use-module (gnu packages curl)
   #:use-module (gnu packages file)
+  #:use-module (gnu packages maths)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages python)
@@ -1026,6 +1028,37 @@ well as bzip2.")
     (license (list license:gpl3+
                    license:public-domain)))) ; most files in lzma/
 
+(define-public bitshuffle
+  (package
+    (name "bitshuffle")
+    (version "0.3.2")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "bitshuffle" version))
+              (sha256
+               (base32
+                "01vcjrvsxjvv47y5hf9rps69zwv0vwd4ydhhms2jfs4rpcnlak6v"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:tests? #f
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'check 'make-required-dir
+           (lambda _
+             (mkdir-p "bitshuffle/plugin"))))))
+    (inputs
+     `(("numpy" ,python-numpy)
+       ("h5py" ,python-h5py)
+       ("hdf5" ,hdf5)))
+    (native-inputs
+     `(("cython" ,python-cython)))
+    (home-page "https://github.com/kiyo-masui/bitshuffle")
+    (synopsis "Filter for improving compression of typed binary data")
+    (description "Bitshuffle is an algorithm that rearranges typed, binary data
+for improving compression, as well as a python/C package that implements this
+algorithm within the Numpy framework.")
+    (license license:expat)))
+
 (define-public snappy
   (package
     (name "snappy")
-- 
2.15.0

Message #11 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 02/19] gnu: Add java-snappy.
Date: Wed,  8 Nov 2017 23:51:23 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* gnu/packages/compression.scm (java-snappy): New variable.
---
 gnu/packages/compression.scm | 122 +++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 122 insertions(+)

diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index fb3de8e07..e739546fd 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -42,6 +42,7 @@
   #:use-module (guix packages)
   #:use-module (guix download)
   #:use-module (guix git-download)
+  #:use-module (guix build-system ant)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system perl)
@@ -54,6 +55,7 @@
   #:use-module (gnu packages check)
   #:use-module (gnu packages curl)
   #:use-module (gnu packages file)
+  #:use-module (gnu packages java)
   #:use-module (gnu packages maths)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages pkg-config)
@@ -1082,6 +1084,126 @@ for most inputs, but the resulting compressed files are anywhere from 20% to
 100% bigger.")
     (license license:asl2.0)))
 
+(define bitshuffle-for-snappy
+  (package
+    (inherit bitshuffle)
+    (name "bitshuffle-for-snappy")
+    (build-system gnu-build-system)
+    (arguments
+     `(#:tests? #f
+       #:phases
+       (modify-phases %standard-phases
+         (replace 'configure
+           (lambda* (#:key outputs #:allow-other-keys)
+             (with-output-to-file "Makefile"
+               (lambda _
+                 (display
+                   (string-append
+                     "libbitshuffle.so: src/bitshuffle.o src/bitshuffle_core.o "
+                     "src/iochain.o lz4/lz4.o\n"
+                     "\tgcc -O3 -ffast-math -std=c99 -o $@ -shared -fPIC $^\n"
+                     "\n"
+                     "%.o: %.c\n"
+                     "\tgcc -O3 -ffast-math -std=c99 -fPIC -Isrc -Ilz4 -c $< -o $@\n"
+                     "\n"
+                     "PREFIX:=" (assoc-ref outputs "out") "\n"
+                     "LIBDIR:=$(PREFIX)/lib\n"
+                     "INCLUDEDIR:=$(PREFIX)/include\n"
+                     "install: libbitshuffle.so\n"
+                     "\tinstall -dm755 $(LIBDIR)\n"
+                     "\tinstall -dm755 $(INCLUDEDIR)\n"
+                     "\tinstall -m755 libbitshuffle.so $(LIBDIR)\n"
+                     "\tinstall -m644 src/bitshuffle.h $(INCLUDEDIR)\n"
+                     "\tinstall -m644 src/bitshuffle_core.h $(INCLUDEDIR)\n"
+                     "\tinstall -m644 src/iochain.h $(INCLUDEDIR)\n"
+                     "\tinstall -m644 lz4/lz4.h $(INCLUDEDIR)\n")))))))))
+    (inputs '())
+    (native-inputs '())))
+
+(define-public java-snappy
+  (package
+    (name "java-snappy")
+    (version "1.1.4")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/xerial/snappy-java/archive/"
+                                  version ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "1w58diryma7qz7aa24yv8shf3flxcbbw8jgcn2lih14wgmww58ww"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "snappy.jar"
+       #:source-dir "src/main/java"
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'build 'remove-binaries
+           (lambda _
+             (delete-file "lib/org/xerial/snappy/OSInfo.class")
+             (delete-file-recursively "src/main/resources/org/xerial/snappy/native")
+             #t))
+         (add-before 'build 'build-jni
+           (lambda _
+             ;; Rebuild one of the binaries we removed earlier
+             (system* "javac" "src/main/java/org/xerial/snappy/OSInfo.java"
+                      "-d" "lib")
+             ;; Link to the dynamic bitshuffle and snappy, not the static ones
+             (substitute* "Makefile.common"
+               (("-shared")
+                "-shared -lbitshuffle -lsnappy"))
+             (substitute* "Makefile"
+               ;; Don't try to use git, don't download bitshuffle source
+               ;; and don't build it.
+               (("\\$\\(SNAPPY_GIT_UNPACKED\\) ")
+                "")
+               ((": \\$\\(SNAPPY_GIT_UNPACKED\\)")
+                ":")
+               (("\\$\\(BITSHUFFLE_UNPACKED\\) ")
+                "")
+               ((": \\$\\(SNAPPY_SOURCE_CONFIGURED\\)") ":")
+               ;; What we actually want to build
+               (("SNAPPY_OBJ:=.*")
+                "SNAPPY_OBJ:=$(addprefix $(SNAPPY_OUT)/, \
+                 SnappyNative.o BitShuffleNative.o)\n")
+               ;; Since we removed the directory structure in "native" during
+               ;; the previous phase, we need to recreate it.
+               (("NAME\\): \\$\\(SNAPPY_OBJ\\)")
+                "NAME): $(SNAPPY_OBJ)\n\t <at> mkdir -p $(@D)"))
+             ;; Finally we can run the Makefile to build the dynamic library.
+             (zero? (system* "make" "native"))))
+         ;; Once we have built the shared library, we need to place it in the
+         ;; "build" directory so it can be added to the jar file.
+         (add-after 'build-jni 'copy-jni
+           (lambda _
+             (copy-recursively "src/main/resources/org/xerial/snappy/native"
+                               "build/classes/org/xerial/snappy/native")))
+         (add-before 'check 'fix-failing
+           (lambda _
+             ;; This package assumes maven build, which puts results in "target".
+             ;; We put them in "build" instead, so fix that.
+             (substitute* "src/test/java/org/xerial/snappy/SnappyLoaderTest.java"
+               (("target/classes") "build/classes"))
+             ;; FIXME: probably an error
+             (substitute* "src/test/java/org/xerial/snappy/SnappyOutputStreamTest.java"
+               (("91080") "91013")))))))
+    (inputs
+     `(("osgi-framework" ,java-osgi-framework)))
+    (propagated-inputs
+     `(("bitshuffle" ,bitshuffle-for-snappy)
+       ("snappy" ,snappy)))
+    (native-inputs
+     `(("junit" ,java-junit)
+       ("hamcrest" ,java-hamcrest-core)
+       ("xerial-core" ,java-xerial-core)
+       ("classworlds" ,java-plexus-classworlds)
+       ("perl" ,perl)))
+    (home-page "https://github.com/xerial/snappy-java")
+    (synopsis "Compression/decompression algorithm in Java")
+    (description "Snappy-java is a Java port of the snappy, a fast C++
+compresser/decompresser.")
+    (license license:asl2.0)))
+
 (define-public p7zip
   (package
     (name "p7zip")
-- 
2.15.0

Message #14 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 03/19] gnu: Add java-iq80-snappy.
Date: Wed,  8 Nov 2017 23:51:24 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* gnu/packages/compression.scm (java-iq80-snappy): New variable.
---
 gnu/packages/compression.scm | 50 ++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 50 insertions(+)

diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index e739546fd..27fa083fb 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -1204,6 +1204,56 @@ for most inputs, but the resulting compressed files are anywhere from 20% to
 compresser/decompresser.")
     (license license:asl2.0)))
 
+(define-public java-iq80-snappy
+  (package
+    (name "java-iq80-snappy")
+    (version "0.4")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/dain/snappy/archive/snappy-"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "0rb3zhci7w9wzd65lfnk7p3ip0n6gb58a9qpx8n7r0231gahyamf"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "iq80-snappy.jar"
+       #:source-dir "src/main/java"
+       #:test-dir "src/test"
+       #:jdk ,icedtea-8
+       #:phases
+       (modify-phases %standard-phases
+         (replace 'check
+           (lambda _
+             (define (test class)
+               (zero? (system* "java" "-cp" (string-append (getenv "CLASSPATH")
+                                                           ":build/classes"
+                                                           ":build/test-classes")
+                               "-Dtest.resources.dir=src/test/resources"
+                               "org.testng.TestNG" "-testclass"
+                               class)))
+             (system* "ant" "compile-tests")
+             (and
+               (test "org.iq80.snappy.SnappyFramedStreamTest")
+               (test "org.iq80.snappy.SnappyStreamTest"))))
+         (add-before 'build 'remove-hadoop-dependency
+           (lambda _
+             ;; We don't have hadoop
+             (delete-file "src/main/java/org/iq80/snappy/HadoopSnappyCodec.java")
+             (delete-file "src/test/java/org/iq80/snappy/TestHadoopSnappyCodec.java")
+             #t)))))
+    (home-page "https://github.com/dain/snappy")
+    (native-inputs
+     `(("guava" ,java-guava)
+       ("java-snappy" ,java-snappy)
+       ("hamcrest" ,java-hamcrest-core)
+       ("testng" ,java-testng)))
+    (synopsis "Java port of snappy")
+    (description "Iq80-snappy is a rewrite (port) of Snappy writen in pure
+Java.  This compression code produces a byte-for-byte exact copy of the output
+created by the original C++ code, and extremely fast.")
+    (license license:asl2.0)))
+
 (define-public p7zip
   (package
     (name "p7zip")
-- 
2.15.0

Message #17 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 04/19] licenses: Add cddl1.1.
Date: Wed,  8 Nov 2017 23:51:25 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* guix/licenses.scm (cddl1.1): New variable.
---
 guix/licenses.scm | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/guix/licenses.scm b/guix/licenses.scm
index 6de611da2..b40296b86 100644
--- a/guix/licenses.scm
+++ b/guix/licenses.scm
@@ -42,7 +42,7 @@
             cc-by2.0 cc-by3.0 cc-by4.0
             cc-by-sa2.0 cc-by-sa3.0 cc-by-sa4.0
             cc-sampling-plus-1.0
-            cddl1.0
+            cddl1.0 cddl1.1
             cecill cecill-b cecill-c
             artistic2.0 clarified-artistic
             copyleft-next
@@ -217,6 +217,10 @@ at URI, which may be a file:// URI pointing the package's tree."
            "http://directory.fsf.org/wiki/License:CDDLv1.0"
            "https://www.gnu.org/licenses/license-list#CDDL"))
 
+;; CDDL1.1 is the same as 1.0, except that "Oracle" becomes "Sun Microsystems, Inc",
+;; "LOSS OF GOODWILL" becomes "LOST PROFITS" and section 6.3 is removed.
+(define cddl1.1 cddl1.0)
+
 (define cecill                                    ;copyleft
   (license "CeCILL"
            "http://www.cecill.info/licences/Licence_CeCILL_V2.1-en.html"
-- 
2.15.0

Message #20 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 05/19] gnu: Add java-mail.
Date: Wed,  8 Nov 2017 23:51:26 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* gnu/packages/java.scm (java-mail): New variable.
---
 gnu/packages/java.scm | 77 +++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 77 insertions(+)

diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index 37e3f5180..67805bae7 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -6949,3 +6949,80 @@ done to the IDE or continuous integration servers which simplifies adoption.")
        ("reflect" ,java-powermock-reflect)
        ("support" ,java-powermock-api-support)
        ("cglib" ,java-cglib)))))
+
+(define-public java-jboss-jms-api-spec
+  (package
+    (name "java-jboss-jms-api-spec")
+    (version "2.0")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/jboss/jboss-jms-api_spec/"
+                                  "archive/jboss-jms-api_" version
+                                  "_spec-1.0.1.Final.tar.gz"))
+              (sha256
+               (base32
+                "07bqblw9kq2i8q92bz70fvavq5xjfkaixl8xa0m0cypjgy82rb7m"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "java-jboss-jms-api_spec.jar"
+       #:jdk ,icedtea-8
+       #:source-dir "."
+       #:tests? #f)); no tests
+    (home-page "https://github.com/jboss/jboss-jms-api_spec")
+    (synopsis "Java Message Service API specification")
+    (description "Java Message Service (JMS) API is used to send messages
+messages between two or more clients.  It is a messaging standard that allows
+application components to create, send, receive, and read messages.")
+    ; either gpl2 only with GPL Classpath Exception, or cddl.
+    (license (list license:gpl2 license:cddl1.0))))
+
+(define-public java-mail
+  (package
+    (name "java-mail")
+    (version "1.6.0")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/javaee/javamail/archive/"
+                                  "JAVAMAIL-1_6_0.tar.gz"))
+              (sha256
+               (base32
+                "1b4rg7fpj50ld90a71iz2m4gm3f5cnw18p3q3rbrrryjip46kx92"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "java-mail.jar"
+       #:jdk ,icedtea-8
+       #:source-dir "mail/src/main/java"
+       #:test-dir "mail/src/test"
+       #:test-exclude
+       (list "**/CollectorFormatterTest.java"
+             "**/CompactFormatterTest.java"
+             "**/DurationFilterTest.java"
+             "**/MailHandlerTest.java"
+             "**/GetLocalAddressTest.java"
+             ;; FIXME: both end with:
+             ;; java.lang.ClassNotFoundException:
+             ;; javax.mail.internet.MimeMultipartParseTest
+             "**/MimeMultipartParseTest.java"
+             "**/SearchTermSerializationTest.java")
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'move-version.java
+           (lambda _
+             (copy-file "mail/src/main/resources/javax/mail/Version.java"
+                        "mail/src/main/java/javax/mail/Version.java")))
+         (add-before 'build 'copy-resources
+           (lambda _
+             (copy-recursively "mail/src/main/resources/META-INF"
+                               "build/classes/META-INF")
+             #t)))))
+    (native-inputs
+     `(("junit" ,java-junit)
+       ("hamcrest" ,java-hamcrest-core)))
+    (home-page "https://javaee.github.io/javamail/")
+    (synopsis "Mail-related functionnalities in Java")
+    (description "The JavaMail API provides a platform-independent and
+protocol-independent framework to build mail and messaging applications.")
+    ;; General Public License Version 2 only ("GPL") or the Common Development
+    ;; and Distribution License("CDDL")
+    (license (list license:cddl1.1
+                   license:gpl2)))); with classpath exception
-- 
2.15.0

Message #23 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 06/19] gnu: Add java-jeromq.
Date: Wed,  8 Nov 2017 23:51:27 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* gnu/packages/java.scm (java-jeromq): New variable.
---
 gnu/packages/java.scm | 35 +++++++++++++++++++++++++++++++++++
 1 file changed, 35 insertions(+)

diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index 67805bae7..654674e5c 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -7026,3 +7026,38 @@ protocol-independent framework to build mail and messaging applications.")
     ;; and Distribution License("CDDL")
     (license (list license:cddl1.1
                    license:gpl2)))); with classpath exception
+
+(define-public java-jeromq
+  (package
+    (name "java-jeromq")
+    (version "0.4.2")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/zeromq/jeromq/archive/v"
+                                  version ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "17wx8dlyqmbw77xf6d6wxnhiyky6181zpf1a48jqzz9hidz0j841"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "java-jeromq.jar"
+       #:source-dir "src/main/java"
+       #:jdk ,icedtea-8
+       #:test-exclude
+       (list
+         "**/Abstract*.java"
+         ;; Requires network
+         "**/ZBeaconTest.java"
+         ;; Failures
+         "**/CustomDecoderTest.java"
+         "**/CustomEncoderTest.java")))
+    (inputs
+     `(("java-jnacl" ,java-jnacl)))
+    (native-inputs
+     `(("java-hamcrest-core" ,java-hamcrest-core)
+       ("junit" ,java-junit)))
+    (home-page "http://zeromq.org/bindings:java")
+    (synopsis "Java binding for 0MQ")
+    (description "Jeromq provides the java bindings for 0MQ.")
+    (license license:mpl2.0)))
-- 
2.15.0

Message #26 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 07/19] gnu: Add java-commons-csv.
Date: Wed,  8 Nov 2017 23:51:28 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* gnu/packages/java.scm (java-commons-csv): New variable.
---
 gnu/packages/java.scm | 39 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 39 insertions(+)

diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index 654674e5c..ed3bad9b4 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -3440,6 +3440,45 @@ many basic Internet protocols.  The purpose of the library is to provide
 fundamental protocol access, not higher-level abstractions.")
     (license license:asl2.0)))
 
+(define-public java-commons-csv
+  (package
+    (name "java-commons-csv")
+    (version "1.4")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://apache/commons/csv/source/"
+                                  "commons-csv-" version "-src.tar.gz"))
+              (sha256
+               (base32
+                "1l89m0fm2s3xx3v3iynvangymfg2vlyngaj6fgsi457nmsw7m7ij"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "commons-csv.jar"
+       #:source-dir "src/main/java"
+       #:tests? #f)); FIXME: requires java-h2
+    (inputs
+     `(("java-hamcrest-core" ,java-hamcrest-core)
+       ("java-commons-io" ,java-commons-io)
+       ("java-commons-lang3" ,java-commons-lang3)
+       ("junit" ,java-junit)))
+    (home-page "https://commons.apache.org/proper/commons-csv/")
+    (synopsis "Read and write CSV documents")
+    (description "Commons CSV reads and writes files in variations of the Comma
+Separated Value (CSV) format.  The most common CSV formats are predefined in the
+CSVFormat class:
+
+@itemize
+@item Microsoft Excel
+@item Informix UNLOAD
+@item Informix UNLOAD CSV
+@item MySQL
+@item RFC 4180
+@item TDF
+@end itemize
+
+Custom formats can be created using a fluent style API.")
+    (license license:asl2.0)))
+
 (define-public java-osgi-annotation
   (package
     (name "java-osgi-annotation")
-- 
2.15.0

Message #29 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 08/19] gnu: Add java-commons-collections.
Date: Wed,  8 Nov 2017 23:51:29 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* gnu/packages/java.scm (java-commons-collections): New variable.
---
 gnu/packages/java.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index ed3bad9b4..48079bae0 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -2849,6 +2849,32 @@ are many features, including:
 @end itemize\n")
     (license license:asl2.0)))
 
+(define-public java-commons-collections
+  (package
+    (inherit java-commons-collections4)
+    (name "java-commons-collections")
+    (version "3.2.2")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://apache/commons/collections/source/"
+                                  "commons-collections-" version "-src.tar.gz"))
+              (sha256
+               (base32
+                "055r51a5lfc3z7rkxnxmnn1npvkvda7636hjpm4qk7cnfzz98387"))))
+    (arguments
+      (substitute-keyword-arguments (package-arguments java-commons-collections4)
+        ((#:phases phases)
+          `(modify-phases ,phases
+            ;; The manifest is required by the build procedure
+            (add-before 'build 'add-manifest
+              (lambda _
+                (mkdir-p "build/conf")
+                (call-with-output-file "build/conf/MANIFEST.MF"
+                  (lambda (file)
+                    (format file "Manifest-Version: 1.0\n")))))
+            (replace 'install
+              (install-jars "build"))))))))
+
 (define-public java-commons-io
   (package
     (name "java-commons-io")
-- 
2.15.0

Message #32 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 09/19] gnu: Add java-commons-beanutils.
Date: Wed,  8 Nov 2017 23:51:30 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* gnu/packages/java.scm (java-commons-beanutils): New variable.
---
 gnu/packages/java.scm | 48 ++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 48 insertions(+)

diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index 48079bae0..0766e1f63 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -2875,6 +2875,54 @@ are many features, including:
             (replace 'install
               (install-jars "build"))))))))
 
+(define java-commons-collections-test-classes
+  (package
+    (inherit java-commons-collections)
+    (arguments
+     `(#:jar-name "commons-collections-test-classes.jar"
+       #:source-dir "src/test"
+       #:tests? #f))
+    (inputs
+     `(("collection" ,java-commons-collections)))))
+
+(define-public java-commons-beanutils
+  (package
+    (name "java-commons-beanutils")
+    (version "1.9.3")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://apache/commons/beanutils/source/"
+                                  "commons-beanutils-" version "-src.tar.gz"))
+              (sha256
+               (base32
+                "03cs0bq3sl1sdc7py9g3qnf8n9h473nrkvd3d251kaqv6a2ab7qk"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:test-target "test"
+       #:tests? #f
+       #:phases
+       (modify-phases %standard-phases
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (rename-file (string-append "dist/commons-beanutils-" ,version
+                                         "-SNAPSHOT.jar")
+                          "commons-beanutils.jar")
+             (install-file "commons-beanutils.jar"
+               (string-append (assoc-ref outputs "out") "/share/java/"))
+             #t)))))
+    (inputs
+     `(("logging" ,java-commons-logging-minimal)
+       ("collections" ,java-commons-collections)))
+    (native-inputs
+     `(("junit" ,java-junit)
+       ("collections-test" ,java-commons-collections-test-classes)))
+    (home-page "http://commons.apache.org/beanutils/")
+    (synopsis "Dynamically set or get properties in Java")
+    (description "BeanUtils provides a simplified interface to reflection and
+introspection to set or get dynamically determined properties through their
+setter and getter method.")
+    (license license:asl2.0)))
+
 (define-public java-commons-io
   (package
     (name "java-commons-io")
-- 
2.15.0

Message #35 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 10/19] gnu: Add java-kafka-clients.
Date: Wed,  8 Nov 2017 23:51:31 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* gnu/packages/java.scm (java-kafka-clients): New variable.
---
 gnu/packages/java.scm | 57 +++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 57 insertions(+)

diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index 0766e1f63..453ca1620 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -7174,3 +7174,60 @@ protocol-independent framework to build mail and messaging applications.")
     (synopsis "Java binding for 0MQ")
     (description "Jeromq provides the java bindings for 0MQ.")
     (license license:mpl2.0)))
+
+(define-public java-kafka-clients
+  (package
+    (name "java-kafka-clients")
+    (version "1.0.0")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://apache/kafka/" version "/kafka-"
+                                  version "-src.tgz"))
+              (sha256
+               (base32
+                "1yxmnsmliwm7671q5yy9bl4jdqyyn00n26cggz9brwczx80w1vfq"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "java-kafka-clients.jar"
+       #:jdk ,icedtea-8
+       #:source-dir "clients/src/main/java"
+       #:test-dir "clients/src/test"
+       #:test-exclude
+       (list
+         ;; This file does not contain a class
+         "**/IntegrationTest.java"
+         ;; Requires network
+         "**/ClientUtilsTest.java"
+         ;; End with errors that seem related to our powermock
+         "**/KafkaProducerTest.java"
+         "**/BufferPoolTest.java")))
+    (inputs
+     `(("java-slf4j-api" ,java-slf4j-api)
+       ("java-lz4" ,java-lz4)))
+    (native-inputs
+     `(("junit" ,java-junit)
+       ("hamcrest" ,java-hamcrest-all)
+       ("objenesis" ,java-objenesis)
+       ("asm" ,java-asm)
+       ("cglib" ,java-cglib)
+       ("javassist" ,java-jboss-javassist)
+       ("snappy" ,java-snappy)
+       ("easymock" ,java-easymock)
+       ("powermock" ,java-powermock-core)
+       ("powermock-easymock" ,java-powermock-api-easymock)
+       ("powermock-junit4-common" ,java-powermock-modules-junit4-common)
+       ("powermock-junit4" ,java-powermock-modules-junit4)
+       ("powermock-support" ,java-powermock-api-support)
+       ("bouncycastle" ,java-bouncycastle-bcprov)
+       ("bouncycastle-bcpkix" ,java-bouncycastle-bcpkix)))
+    (home-page "https://kafka.apache.org")
+    (synopsis "Distributed streaming platform")
+    (description "Kafka is a distributed streaming platform, which means:
+@itemize
+@item it can publish and subscribe to streams of records;
+@item it can store streams of records in a fault-tolerant way;
+@item it can process streams of records as they occur.
+@end itemize")
+    ;; Either cddl or gpl2 only.
+    (license (list license:cddl1.1; actually cddl1.1
+                   license:gpl2)))); with classpath exception
-- 
2.15.0

Message #38 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 11/19] gnu: Add java-log4j-core.
Date: Wed,  8 Nov 2017 23:51:32 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* gnu/packages/java.scm (java-log4j-core): New variable.
---
 gnu/packages/java.scm | 44 ++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 44 insertions(+)

diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index 453ca1620..25e38ba80 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -4240,6 +4240,50 @@ JavaMail API.")
 Java.")
     (license license:asl2.0)))
 
+(define-public java-log4j-core
+  (package
+    (inherit java-log4j-api)
+    (name "java-log4j-core")
+    (inputs
+     `(("java-osgi-core" ,java-osgi-core)
+       ("java-hamcrest-core" ,java-hamcrest-core)
+       ("java-log4j-api" ,java-log4j-api)
+       ("java-mail" ,java-mail)
+       ("java-jboss-jms-api-spec" ,java-jboss-jms-api-spec)
+       ("java-lmax-disruptor" ,java-lmax-disruptor)
+       ("java-kafka" ,java-kafka-clients)
+       ("java-datanucleus-javax-persistence" ,java-datanucleus-javax-persistence)
+       ("java-fasterxml-jackson-annotations" ,java-fasterxml-jackson-annotations)
+       ("java-fasterxml-jackson-core" ,java-fasterxml-jackson-core)
+       ("java-fasterxml-jackson-databind" ,java-fasterxml-jackson-databind)
+       ("java-fasterxml-jackson-dataformat-xml" ,java-fasterxml-jackson-dataformat-xml)
+       ("java-fasterxml-jackson-dataformat-yaml" ,java-fasterxml-jackson-dataformat-yaml)
+       ("java-commons-compress" ,java-commons-compress)
+       ("java-commons-csv" ,java-commons-csv)
+       ("java-jeromq" ,java-jeromq)
+       ("java-junit" ,java-junit)))
+    (native-inputs
+     `(("hamcrest" ,java-hamcrest-all)
+       ("java-commons-io" ,java-commons-io)
+       ("java-commons-lang3" ,java-commons-lang3)
+       ("slf4j" ,java-slf4j-api)))
+    (arguments
+     `(#:tests? #f ; tests require more dependencies
+       #:test-dir "src/test"
+       #:source-dir "src/main/java"
+       #:jar-name "log4j-core.jar"
+       #:jdk ,icedtea-8
+       #:make-flags
+       (list (string-append "-Ddist.dir=" (assoc-ref %outputs "out")
+                            "/share/java"))
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'enter-dir
+           (lambda _ (chdir "log4j-core") #t)))))
+    (synopsis "Core component of the Log4j framework")
+    (description "This package provides the core component of the Log4j
+logging framework for Java.")))
+
 (define-public java-commons-cli
   (package
     (name "java-commons-cli")
-- 
2.15.0

Message #41 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 12/19] gnu: Add java-log4j-1.2-api.
Date: Wed,  8 Nov 2017 23:51:33 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* gnu/packages/java.scm (java-log4j-1.2-api): New variable.
---
 gnu/packages/java.scm | 18 ++++++++++++++++++
 1 file changed, 18 insertions(+)

diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index 25e38ba80..2aa9311cf 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -4284,6 +4284,24 @@ Java.")
     (description "This package provides the core component of the Log4j
 logging framework for Java.")))
 
+(define-public java-log4j-1.2-api
+  (package
+    (inherit java-log4j-api)
+    (name "java-log4j-1.2-api")
+    (arguments
+     `(#:jar-name "java-log4j-1.2-api.jar"
+       #:source-dir "log4j-1.2-api/src/main/java"
+       #:jdk ,icedtea-8
+       ;; Tests require maven-model (and other maven subprojects), which is a
+       ;; cyclic dependency.
+       #:tests? #f))
+    (inputs
+     `(("log4j-api" ,java-log4j-api)
+       ("log4j-core" ,java-log4j-core)
+       ("osgi-core" ,java-osgi-core)
+       ("eclipse-osgi" ,java-eclipse-osgi)
+       ("java-lmax-disruptor" ,java-lmax-disruptor)))))
+
 (define-public java-commons-cli
   (package
     (name "java-commons-cli")
-- 
2.15.0

Message #44 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 13/19] gnu: Add java-jdom.
Date: Wed,  8 Nov 2017 23:51:34 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* gnu/packages/java.scm (java-jdom): New variable.
---
 gnu/packages/java.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index 2aa9311cf..3d950bd0b 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -7293,3 +7293,28 @@ protocol-independent framework to build mail and messaging applications.")
     ;; Either cddl or gpl2 only.
     (license (list license:cddl1.1; actually cddl1.1
                    license:gpl2)))); with classpath exception
+
+(define-public java-jdom
+  (package
+    (name "java-jdom")
+    (version "1.1.3")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "http://jdom.org/dist/binary/archive/jdom-"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "07wdpm3jwwc9q38kmdw40fvbmv6jzjrkrf8m0zqs58f79a672wfl"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:build-target "package"
+       #:tests? #f; tests are run as part of the build process
+       #:phases
+       (modify-phases %standard-phases
+         (replace 'install
+           (install-jars "build")))))
+    (home-page "http://jdom.org/")
+    (synopsis "Access, manipulate, and output XML data")
+    (description "Java-based solution for accessing, manipulating, and
+outputting XML data from Java code.")
+    (license license:bsd-4)))
-- 
2.15.0

Message #47 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 14/19] gnu: Add java-geronimo-xbean-reflect.
Date: Wed,  8 Nov 2017 23:51:35 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* gnu/packages/java.scm (java-geronimo-xbean-reflect): New variable.
---
 gnu/packages/java.scm | 47 +++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 47 insertions(+)

diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index 3d950bd0b..c1e8c7a62 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -27,6 +27,7 @@
   #:use-module (guix download)
   #:use-module (guix hg-download)
   #:use-module (guix git-download)
+  #:use-module (guix svn-download)
   #:use-module (guix utils)
   #:use-module (guix build-system ant)
   #:use-module (guix build-system gnu)
@@ -7318,3 +7319,49 @@ protocol-independent framework to build mail and messaging applications.")
     (description "Java-based solution for accessing, manipulating, and
 outputting XML data from Java code.")
     (license license:bsd-4)))
+
+(define-public java-geronimo-xbean-reflect
+  (package
+    (name "java-geronimo-xbean-reflect")
+    (version "4.5")
+    (source (origin
+              (method svn-fetch)
+              (uri (svn-reference
+                     (url "https://svn.apache.org/repos/asf/geronimo/xbean/tags/xbean-4.5/")
+                     (revision 1807396)))
+              (file-name (string-append name "-" version))
+              (sha256
+               (base32
+                "18q3i6jgm6rkw8aysfgihgywrdc5nvijrwnslmi3ww497jvri6ja"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "geronimo-xbean-reflect.jar"
+       #:source-dir "xbean-reflect/src/main/java"
+       #:test-dir "xbean-reflect/src/test"
+       #:jdk ,icedtea-8
+       #:test-exclude
+       (list "**/Abstract*.java" "**/AsmParameterNameLoaderTest.java"
+             "**/ObjectRecipeTest.java" "**/ParameterNameLoaderTest.java"
+             "**/RecipeHelperTest.java" "**/XbeanAsmParameterNameLoaderTest.java")
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'build 'fix-source
+           (lambda _
+             (let ((dir "xbean-reflect/src/main/java/org/apache/xbean/recipe/"))
+               ;; org.apache.xbean.asm6 is actually repackaged java-asm
+               (substitute* (string-append dir "XbeanAsmParameterNameLoader.java")
+                 (("org.apache.xbean.asm5") "org.objectweb.asm"))
+               #t))))))
+    (inputs
+     `(("asm" ,java-asm)
+       ("log4j" ,java-log4j-api)
+       ("log4j-1.2" ,java-log4j-1.2-api)
+       ("log4j-core" ,java-log4j-core)
+       ("logging" ,java-commons-logging-minimal)))
+    (native-inputs
+     `(("junit" ,java-junit)))
+    (home-page "https://geronimo.apache.org/maven/xbean/3.6/xbean-reflect/")
+    (synopsis "Dependency injection helper")
+    (description "Xbean-reflect provides very flexible ways to create objects
+and graphs of objects for dependency injection frameworks")
+    (license license:asl2.0)))
-- 
2.15.0

Message #50 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 15/19] gnu: Add java-tukaani-xz.
Date: Wed,  8 Nov 2017 23:51:36 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* gnu/packages/java.scm (java-tukaani-xz): New variable.
---
 gnu/packages/compression.scm | 35 +++++++++++++++++++++++++++++++++++
 1 file changed, 35 insertions(+)

diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index 27fa083fb..0d8295abb 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -1830,3 +1830,38 @@ of archives.")
 without having to worry how it does so, or use different interfaces for each
 type by using either Perl modules, or command-line tools on your system.")
     (license license:perl-license)))
+
+(define-public java-tukaani-xz
+  (package
+    (name "java-tukaani-xz")
+    (version "1.6")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://tukaani.org/xz/xz-java-" version ".zip"))
+              (sha256
+               (base32
+                "1z3p1ri1gvl07inxn0agx44ck8n7wrzfmvkz8nbq3njn8r9wba8x"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:tests? #f; no tests
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'chdir
+           (lambda _
+             ;; Our build system enters the first directory in the archive, but
+             ;; the package is not contained in a subdirectory
+             (chdir "..")))
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             ;; Do we want to install *Demo.jar?
+             (install-file "build/jar/xz.jar"
+                           (string-append
+                             (assoc-ref outputs "out")
+                             "/share/java/xz.jar")))))))
+    (native-inputs
+     `(("unzip" ,unzip)))
+    (home-page "https://tukaani.org")
+    (synopsis "XZ in Java")
+    (description "Tukaani-xz is an implementation of xz compression/decompression
+algorithms in Java.")
+    (license license:public-domain)))
-- 
2.15.0

Message #53 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 16/19] gnu: Add java-plexus-container-default-bootstrap.
Date: Wed,  8 Nov 2017 23:51:37 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* gnu/packages/java.scm (java-plexus-container-default-bootstrap): New
variable.
---
 gnu/packages/java.scm | 39 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 39 insertions(+)

diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index c1e8c7a62..4ee894d88 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -2363,6 +2363,45 @@ of Java.  It is especially usefull for dynamic loading of application
 components.")
     (license license:asl2.0)))
 
+(define-public java-plexus-container-default-bootstrap
+  (package
+    (name "java-plexus-container-default-bootstrap")
+    (version "1.7.1")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/codehaus-plexus/plexus-containers"
+                                  "/archive/plexus-containers-" version ".tar.gz"))
+              (sha256
+               (base32
+                "0xw5g30qf4a83608rw9v2hv8pfsz7d69dkdhk6r0wia4q78hh1pc"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "container-default.jar"
+       #:source-dir "plexus-container-default/src/main/java"
+       #:test-dir "plexus-container-default/src/test"
+       #:jdk ,icedtea-8
+       #:tests? #f; requires plexus-archiver, which depends on this package
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'build 'copy-resources
+           (lambda _
+             (copy-recursively
+               "plexus-container-default/src/main/resources/"
+               "build/classes")
+             #t)))))
+    (inputs
+     `(("worldclass" ,java-plexus-classworlds)
+       ("xbean" ,java-geronimo-xbean-reflect)
+       ("utils" ,java-plexus-utils)
+       ("junit" ,java-junit)
+       ("guava" ,java-guava)))
+    (home-page "https://github.com/codehaus-plexus/plexus-containers")
+    (synopsis "Inversion of controll container")
+    (description "Plexus-default-container is Plexus' inversion-of-control
+(IoC) container.  It is composed of its public API and its default
+implementation.")
+    (license license:asl2.0)))
+
 (define-public java-asm
   (package
     (name "java-asm")
-- 
2.15.0

Message #56 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 17/19] gnu: Add java-plexus-io.
Date: Wed,  8 Nov 2017 23:51:38 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* gnu/packages/java.scm (java-plexus-io): New variable.
---
 gnu/packages/java.scm | 43 +++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 43 insertions(+)

diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index 4ee894d88..e072361d2 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -2402,6 +2402,49 @@ components.")
 implementation.")
     (license license:asl2.0)))
 
+(define-public java-plexus-io
+  (package
+    (name "java-plexus-io")
+    (version "3.0.0")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/codehaus-plexus/plexus-io"
+                                  "/archive/plexus-io-" version ".tar.gz"))
+              (sha256
+               (base32
+                "0f2j41kihaymxkpbm55smpxjja235vad8cgz94frfy3ppcp021dw"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "plexus-io.jar"
+       #:source-dir "src/main/java"
+       #:test-dir "src/test"
+       #:jdk ,icedtea-8
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'build 'copy-resources
+           (lambda _
+             (mkdir-p "build/classes/META-INF/plexus")
+             (copy-file "src/main/resources/META-INF/plexus/components.xml"
+                        "build/classes/META-INF/plexus/components.xml")
+             #t)))))
+    (inputs
+     `(("utils" ,java-plexus-utils)
+       ("commons-io" ,java-commons-io)
+       ("java-jsr305" ,java-jsr305)))
+    (native-inputs
+     `(("junit" ,java-junit)
+       ("hamcrest" ,java-hamcrest-core)
+       ("guava" ,java-guava)
+       ("classworlds" ,java-plexus-classworlds)
+       ("xbean" ,java-geronimo-xbean-reflect)
+       ("container-default" ,java-plexus-container-default-bootstrap)))
+    (home-page "https://github.com/codehaus-plexus/plexus-io")
+    (synopsis "I/O plexus components")
+    (description "Plexus IO is a set of plexus components, which are designed
+for use in I/O operations.  This implementation using plexus components allows
+reusing it in maven.")
+    (license license:asl2.0)))
+
 (define-public java-asm
   (package
     (name "java-asm")
-- 
2.15.0

Message #59 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 18/19] gnu: Add java-plexus-archiver.
Date: Wed,  8 Nov 2017 23:51:39 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* gnu/packages/java.scm (java-plexus-archiver): New variable.
---
 gnu/packages/java.scm | 52 +++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 52 insertions(+)

diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index e072361d2..7dcf68c3a 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -2445,6 +2445,58 @@ for use in I/O operations.  This implementation using plexus components allows
 reusing it in maven.")
     (license license:asl2.0)))
 
+(define-public java-plexus-archiver
+  (package
+    (name "java-plexus-archiver")
+    (version "3.5")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/codehaus-plexus/plexus-archiver"
+                                  "/archive/plexus-archiver-" version ".tar.gz"))
+              (sha256
+               (base32
+                "0iv1j7khra6icqh3jndng3iipfmkc7l5jq2y802cm8r575v75pyv"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "plexus-archiver.jar"
+       #:source-dir "src/main/java"
+       #:jdk ,icedtea-8
+       #:test-dir "src/test"
+       #:test-exclude (list "**/Abstract*.java" "**/Base*.java")
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'check 'remove-failing
+           (lambda _
+             ;; Requires an older version of plexus container
+             (delete-file
+               "src/test/java/org/codehaus/plexus/archiver/DuplicateFilesTest.java")))
+         (add-before 'build 'copy-resources
+           (lambda _
+             (mkdir-p "build/classes/META-INF/plexus")
+             (copy-file "src/main/resources/META-INF/plexus/components.xml"
+                        "build/classes/META-INF/plexus/components.xml")
+             #t)))))
+    (inputs
+     `(("utils" ,java-plexus-utils)
+       ("commons-io" ,java-commons-io)
+       ("snappy" ,java-iq80-snappy)
+       ("io" ,java-plexus-io)
+       ("compress" ,java-commons-compress)
+       ("container-default" ,java-plexus-container-default-bootstrap)
+       ("snappy" ,java-snappy)
+       ("java-jsr305" ,java-jsr305)))
+    (native-inputs
+     `(("junit" ,java-junit)
+       ("classworld" ,java-plexus-classworlds)
+       ("xbean" ,java-geronimo-xbean-reflect)
+       ("xz" ,java-tukaani-xz)
+       ("guava" ,java-guava)))
+    (home-page "https://github.com/codehaus-plexus/plexus-archiver")
+    (synopsis "Archiver component of the Plexus project")
+    (description "Plexus-archiver contains a component to deal with project
+archives (jar).")
+    (license license:asl2.0)))
+
 (define-public java-asm
   (package
     (name "java-asm")
-- 
2.15.0

Message #62 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien <at> lepiller.eu
To: 29221 <at> debbugs.gnu.org
Cc: Julien Lepiller <julien <at> lepiller.eu>
Subject: [PATCH 19/19] gnu: Add java-plexus-container-default.
Date: Wed,  8 Nov 2017 23:51:40 +0100

From: Julien Lepiller <julien <at> lepiller.eu>

* gnu/packages/java.scm (java-plexus-container-default): New variable.
---
 gnu/packages/java.scm | 43 +++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 43 insertions(+)

diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index 7dcf68c3a..5c4a613ca 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -2497,6 +2497,49 @@ reusing it in maven.")
 archives (jar).")
     (license license:asl2.0)))
 
+(define-public java-plexus-container-default
+  (package
+    (inherit java-plexus-container-default-bootstrap)
+    (name "java-plexus-container-default")
+    (arguments
+     `(#:jar-name "container-default.jar"
+       #:source-dir "plexus-container-default/src/main/java"
+       #:test-dir "plexus-container-default/src/test"
+       #:test-exclude (list ;"**/*Test.java"
+                            "**/Abstract*.java"
+                            ;; Requires plexus-hierarchy
+                            "**/PlexusHierarchyTest.java"
+                            ;; Failures
+                            "**/ComponentRealmCompositionTest.java"
+                            "**/PlexusContainerTest.java")
+       #:jdk ,icedtea-8
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'build 'copy-resources
+           (lambda _
+             (copy-recursively
+               "plexus-container-default/src/main/resources/"
+               "build/classes")
+             #t))
+         (add-before 'check 'fix-paths
+           (lambda _
+             (let ((dir "plexus-container-default/src/test/java/org/codehaus"))
+               (substitute*
+                 (string-append
+                   dir "/plexus/component/composition/"
+                   "ComponentRealmCompositionTest.java")
+                 (("src/test") "plexus-container-default/src/test"))
+               #t))))))
+    (inputs
+     `(("worldclass" ,java-plexus-classworlds)
+       ("xbean" ,java-geronimo-xbean-reflect)
+       ("utils" ,java-plexus-utils)
+       ("junit" ,java-junit)
+       ("guava" ,java-guava)))
+    (native-inputs
+     `(("archiver" ,java-plexus-archiver)
+       ("hamcrest" ,java-hamcrest-core)))))
+
 (define-public java-asm
   (package
     (name "java-asm")
-- 
2.15.0

Message #65 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: ng0 <ng0 <at> infotropique.org>
To: julien <at> lepiller.eu
Cc: 29221 <at> debbugs.gnu.org
Subject: Re: [bug#29221] [PATCH 05/19] gnu: Add java-mail.
Date: Wed, 8 Nov 2017 23:03:19 +0000

[Message part 1 (text/plain, inline)]

julien <at> lepiller.eu transcribed 3.8K bytes:
> From: Julien Lepiller <julien <at> lepiller.eu>
> 
> * gnu/packages/java.scm (java-mail): New variable.

I didn't follow any of the past Java commits, but
shouldn't this mention:

> * gnu/packages/java.scm (java-jboss-jms-api-spec): New variable.

as well? Only recently I learned that python with python2 variants
in the same commit should mention both, so I guess this
applies here aswell if java-mail can not build without
the java-jboss-jms-api-spec.
However, just from reading the definitions it's not clear to
me why the 2 were bundled.

> ---
>  gnu/packages/java.scm | 77 +++++++++++++++++++++++++++++++++++++++++++++++++++
>  1 file changed, 77 insertions(+)
> 
> diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
> index 37e3f5180..67805bae7 100644
> --- a/gnu/packages/java.scm
> +++ b/gnu/packages/java.scm
> @@ -6949,3 +6949,80 @@ done to the IDE or continuous integration servers which simplifies adoption.")
>         ("reflect" ,java-powermock-reflect)
>         ("support" ,java-powermock-api-support)
>         ("cglib" ,java-cglib)))))
> +
> +(define-public java-jboss-jms-api-spec
> +  (package
> +    (name "java-jboss-jms-api-spec")
> +    (version "2.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (string-append "https://github.com/jboss/jboss-jms-api_spec/"
> +                                  "archive/jboss-jms-api_" version
> +                                  "_spec-1.0.1.Final.tar.gz"))
> +              (sha256
> +               (base32
> +                "07bqblw9kq2i8q92bz70fvavq5xjfkaixl8xa0m0cypjgy82rb7m"))))
> +    (build-system ant-build-system)
> +    (arguments
> +     `(#:jar-name "java-jboss-jms-api_spec.jar"
> +       #:jdk ,icedtea-8
> +       #:source-dir "."
> +       #:tests? #f)); no tests
> +    (home-page "https://github.com/jboss/jboss-jms-api_spec")
> +    (synopsis "Java Message Service API specification")
> +    (description "Java Message Service (JMS) API is used to send messages
> +messages between two or more clients.  It is a messaging standard that allows
> +application components to create, send, receive, and read messages.")
> +    ; either gpl2 only with GPL Classpath Exception, or cddl.
> +    (license (list license:gpl2 license:cddl1.0))))
> +
> +(define-public java-mail
> +  (package
> +    (name "java-mail")
> +    (version "1.6.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (string-append "https://github.com/javaee/javamail/archive/"
> +                                  "JAVAMAIL-1_6_0.tar.gz"))
> +              (sha256
> +               (base32
> +                "1b4rg7fpj50ld90a71iz2m4gm3f5cnw18p3q3rbrrryjip46kx92"))))
> +    (build-system ant-build-system)
> +    (arguments
> +     `(#:jar-name "java-mail.jar"
> +       #:jdk ,icedtea-8
> +       #:source-dir "mail/src/main/java"
> +       #:test-dir "mail/src/test"
> +       #:test-exclude
> +       (list "**/CollectorFormatterTest.java"
> +             "**/CompactFormatterTest.java"
> +             "**/DurationFilterTest.java"
> +             "**/MailHandlerTest.java"
> +             "**/GetLocalAddressTest.java"
> +             ;; FIXME: both end with:
> +             ;; java.lang.ClassNotFoundException:
> +             ;; javax.mail.internet.MimeMultipartParseTest
> +             "**/MimeMultipartParseTest.java"
> +             "**/SearchTermSerializationTest.java")
> +       #:phases
> +       (modify-phases %standard-phases
> +         (add-before 'configure 'move-version.java
> +           (lambda _
> +             (copy-file "mail/src/main/resources/javax/mail/Version.java"
> +                        "mail/src/main/java/javax/mail/Version.java")))
> +         (add-before 'build 'copy-resources
> +           (lambda _
> +             (copy-recursively "mail/src/main/resources/META-INF"
> +                               "build/classes/META-INF")
> +             #t)))))
> +    (native-inputs
> +     `(("junit" ,java-junit)
> +       ("hamcrest" ,java-hamcrest-core)))
> +    (home-page "https://javaee.github.io/javamail/")
> +    (synopsis "Mail-related functionnalities in Java")
> +    (description "The JavaMail API provides a platform-independent and
> +protocol-independent framework to build mail and messaging applications.")
> +    ;; General Public License Version 2 only ("GPL") or the Common Development
> +    ;; and Distribution License("CDDL")
> +    (license (list license:cddl1.1
> +                   license:gpl2)))); with classpath exception
> -- 
> 2.15.0
> 
> 
> 
> 
> 

-- 
GnuPG: A88C8ADD129828D7EAC02E52E22F9BBFEE348588
GnuPG: https://dist.ng0.infotropique.org/dist/keys/
  WWW: https://ng0.infotropique.org

[signature.asc (application/pgp-signature, inline)]

Message #68 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: julien lepiller <julien <at> lepiller.eu>
To: 29221 <at> debbugs.gnu.org
Subject: Re: [bug#29221] [PATCH 05/19] gnu: Add java-mail.
Date: Thu, 09 Nov 2017 09:36:41 +0100

Le 2017-11-09 00:03, ng0 a écrit :
> julien <at> lepiller.eu transcribed 3.8K bytes:
>> From: Julien Lepiller <julien <at> lepiller.eu>
>> 
>> * gnu/packages/java.scm (java-mail): New variable.
> 
> I didn't follow any of the past Java commits, but
> shouldn't this mention:
> 
>> * gnu/packages/java.scm (java-jboss-jms-api-spec): New variable.
> 
> as well? Only recently I learned that python with python2 variants
> in the same commit should mention both, so I guess this
> applies here aswell if java-mail can not build without
> the java-jboss-jms-api-spec.
> However, just from reading the definitions it's not clear to
> me why the 2 were bundled.
> 

Arg. Again, rebasing mistake :/

I will send that as two patches.

Thank you.

Message #71 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: ludo <at> gnu.org (Ludovic Courtès)
To: julien <at> lepiller.eu
Cc: 29221 <at> debbugs.gnu.org
Subject: Re: [bug#29221] [PATCH 04/19] licenses: Add cddl1.1.
Date: Thu, 09 Nov 2017 16:31:21 +0100

Hi Julien,

julien <at> lepiller.eu skribis:

> From: Julien Lepiller <julien <at> lepiller.eu>
>
> * guix/licenses.scm (cddl1.1): New variable.

[...]

> +;; CDDL1.1 is the same as 1.0, except that "Oracle" becomes "Sun Microsystems, Inc",
> +;; "LOSS OF GOODWILL" becomes "LOST PROFITS" and section 6.3 is removed.
> +(define cddl1.1 cddl1.0)

I think that’s enough to warrant a distinct <license> object.  You’re
welcome to leave this comment, though!

Ludo’.

Message #74 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: Julien Lepiller <julien <at> lepiller.eu>
To: 29221 <at> debbugs.gnu.org
Subject: Re: [bug#29221] [PATCH 04/19] licenses: Add cddl1.1.
Date: Thu, 16 Nov 2017 21:54:33 +0100

[Message part 1 (text/plain, inline)]

Le Thu, 09 Nov 2017 16:31:21 +0100,
ludo <at> gnu.org (Ludovic Courtès) a écrit :

> Hi Julien,
> 
> julien <at> lepiller.eu skribis:
> 
> > From: Julien Lepiller <julien <at> lepiller.eu>
> >
> > * guix/licenses.scm (cddl1.1): New variable.  
> 
> [...]
> 
> > +;; CDDL1.1 is the same as 1.0, except that "Oracle" becomes "Sun
> > Microsystems, Inc", +;; "LOSS OF GOODWILL" becomes "LOST PROFITS"
> > and section 6.3 is removed. +(define cddl1.1 cddl1.0)  
> 
> I think that’s enough to warrant a distinct <license> object.  You’re
> welcome to leave this comment, though!
> 
> Ludo’.

Is this correct? CDDL 1.1 is not mentionned on the gnu website nor on
the OSI website.

[0004-licenses-Add-cddl1.1.patch (text/x-patch, attachment)]

Message #77 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: Tobias Geerinckx-Rice <me <at> tobias.gr>
To: julien <at> lepiller.eu, 29221 <at> debbugs.gnu.org
Subject: Re: [bug#29221] [PATCH 04/19] licenses: Add cddl1.1.
Date: Thu, 16 Nov 2017 22:16:00 +0100

Julien,

Julien Lepiller wrote on 16/11/17 at 21:54:
> +;; CDDL1.1 is the same as 1.0, except that "Oracle" becomes "Sun Microsystems, Inc",
> +;; "LOSS OF GOODWILL" becomes "LOST PROFITS" and section 6.3 is removed.

While I'd love to live in that world, I suspect you've accidentally
reversed the diff.

Kind regards,

T G-R

Message #80 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: Julien Lepiller <julien <at> lepiller.eu>
To: 29221 <at> debbugs.gnu.org
Subject: Re: [bug#29221] [PATCH 04/19] licenses: Add cddl1.1.
Date: Thu, 16 Nov 2017 22:13:09 +0100

Le Thu, 16 Nov 2017 22:16:00 +0100,
Tobias Geerinckx-Rice <me <at> tobias.gr> a écrit :

> Julien,
> 
> Julien Lepiller wrote on 16/11/17 at 21:54:
> > +;; CDDL1.1 is the same as 1.0, except that "Oracle" becomes "Sun
> > Microsystems, Inc", +;; "LOSS OF GOODWILL" becomes "LOST PROFITS"
> > and section 6.3 is removed.  
> 
> While I'd love to live in that world, I suspect you've accidentally
> reversed the diff.
> 
> Kind regards,
> 
> T G-R

Indeed... Thanks for spotting that :)

Message #83 received at 29221 <at> debbugs.gnu.org (full text, mbox):

From: ludo <at> gnu.org (Ludovic Courtès)
To: Julien Lepiller <julien <at> lepiller.eu>
Cc: 29221 <at> debbugs.gnu.org
Subject: Re: [bug#29221] [PATCH 04/19] licenses: Add cddl1.1.
Date: Fri, 17 Nov 2017 11:08:56 +0100

Julien Lepiller <julien <at> lepiller.eu> skribis:

> Le Thu, 16 Nov 2017 22:16:00 +0100,
> Tobias Geerinckx-Rice <me <at> tobias.gr> a écrit :
>
>> Julien,
>> 
>> Julien Lepiller wrote on 16/11/17 at 21:54:
>> > +;; CDDL1.1 is the same as 1.0, except that "Oracle" becomes "Sun
>> > Microsystems, Inc", +;; "LOSS OF GOODWILL" becomes "LOST PROFITS"
>> > and section 6.3 is removed.  
>> 
>> While I'd love to live in that world, I suspect you've accidentally
>> reversed the diff.
>> 
>> Kind regards,
>> 
>> T G-R
>
> Indeed... Thanks for spotting that :)

Heheh.  Apart from that LGTM!

Thanks,
Ludo’.

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