GNU bug report logs - #8824
sort occasionally hangs - appears to be in a merge-sort loop

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From: Mina Naguib <mina.naguib <at> bloomdigital.com>
To: 8824 <at> debbugs.gnu.org
Subject: bug#8824: sort occasionally hangs - appears to be in a merge-sort loop
Date: Fri, 10 Jun 2011 09:54:08 -0400

Hi

I realized that there was a mistake on my part in the initial report.

On 2011-06-09, at 2:46 AM, Paul Eggert wrote:
> Thanks for your bug report.  If 'sort' is breaking up its input into 4
> MiB chunks, sorting them, creating a separate temp file for each
> chunk, and then merging the results with a 16-way merge, then the
> first level of 16-way merges will produce 64 MiB files, and the second
> level will produce 1 GiB temp files, which is about the size you're
> observing.  Since your input is about 18 GiB in size (is that right?),
> I'd expect to see two third-level merges.  The first would be a 16-way
> merge, generating about 16 GiB total.  The second would be a roughly
> 2-way merge, generating about 2 GiB.  Then there would be a single
> fourth-level merge of these two big files into the final 18 GiB of
> output.


The input data is not 350 million records, but significantly higher (to the tune of 2 billion).  I'd estimate that at ~56 bytes per record, the data set's size was roughly 100Gigs

I may have jumped the gun and associated the delay/looping I've observed with the unrelated "hang" bug I've observed earlier with compressed temp files in coreutils 8.5.

Given this new information, do you think the behaviour I observed is reasonable ?  Or is there still the possibility of a bug worth pursuing ?


> How much RAM do you have?  Is your host x86 or x86-64 or what?
> (That "4 MiB" in my example is an absurdly small number, and
> this is a performance bug in 'sort', but that's a different
> matter I think.)

This occurred on an x86_64 box with 12G RAM, 4 x 2.66Ghz CPUs.  The disks are quite slow as it's all on the same local RAID5 volume for both the read-data and the written temp files and eventual output. 


Thank you.

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