GNU bug report logs - #79196
[PATCH] gnu: virtuoso-ose: Update to 7.2.15

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Frederick Muriuki Muriithi <fredmanglis <at> gmail.com>
Subject: bug#79196: closed (Re: [PATCH] gnu: virtuoso-ose: Update to 7.2.15)
Date: Fri, 08 Aug 2025 12:13:02 +0000

[Message part 1 (text/plain, inline)]

Your bug report

#79196: [PATCH] gnu: virtuoso-ose: Update to 7.2.15

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 79196 <at> debbugs.gnu.org.

-- 
79196: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=79196
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: Andreas Enge <andreas <at> enge.fr>
To: Frederick Muriithi <fredmanglis <at> gmail.com>
Cc: 79196-done <at> debbugs.gnu.org
Subject: Re: [PATCH] gnu: virtuoso-ose: Update to 7.2.15
Date: Fri, 8 Aug 2025 14:12:44 +0200

Am Fri, Aug 08, 2025 at 06:29:57AM -0500 schrieb Frederick Muriithi:
> Okay. Let me add those fixes, and create an account with codeberg.
> I'll send a pull request there once I've made the changes, so this can
> be marked as complete, I think.

Excellent, thanks!

Andreas

[Message part 3 (message/rfc822, inline)]

From: Frederick Muriuki Muriithi <fredmanglis <at> gmail.com>
To: guix-patches <at> gnu.org
Subject: [PATCH] gnu: virtuoso-ose: Update to 7.2.15
Date: Thu,  7 Aug 2025 14:27:29 -0500

* gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.15
  [source] <snippet>: Update snippet to simply delete all prebuild Java
  archives
  [arguments] <phases>: remove the custom 'bootstrap phase
  <phases>: Update list of files in 'avoid-embedding-kernel-and-timestamps
  phase
  [native-inputs]: Add python as a build dependency

Change-Id: If346425514cdb23cd8325f8666fa523072fa1276
---
 gnu/packages/databases.scm | 30 +++++-------------------------
 1 file changed, 5 insertions(+), 25 deletions(-)

diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index d6a042a378..8473a04b52 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -4067,30 +4067,19 @@ (define-public python-lmdb
 (define-public virtuoso-ose
   (package
     (name "virtuoso-ose")
-    (version "7.2.11")
+    (version "7.2.15")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "mirror://sourceforge/virtuoso/virtuoso/" version "/"
                            "virtuoso-opensource-" version ".tar.gz"))
        (sha256
-        (base32 "0mk25gr1pafmps4nsydjprwswbzwch8b583nlwh7x2031sz7ald1"))
-       (patches (search-patches "virtuoso-ose-remove-pre-built-jar-files.patch"))
+        (base32 "1nz6kddwxz5k79g3skj7y45f0l20m8fh8haw42j313xm177xpdp0"))
        (modules '((guix build utils)))
        ;; This snippet removes pre-built Java archives.
        (snippet
         #~(for-each delete-file-recursively
-                    (list "binsrc/hibernate"
-                          "binsrc/jena"
-                          "binsrc/jena2"
-                          "binsrc/jena3"
-                          "binsrc/jena4"
-                          "binsrc/rdf4j"
-                          "binsrc/sesame"
-                          "binsrc/sesame2"
-                          "binsrc/sesame3"
-                          "binsrc/sesame4"
-                          "libsrc/JDBCDriverType4")))))
+                   (find-files "." "\\.jar$")))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -4103,9 +4092,6 @@ (define-public virtuoso-ose
               "--enable-static=no")
       #:phases
       #~(modify-phases %standard-phases
-          (replace 'bootstrap
-            (lambda _
-              (invoke "sh" "autogen.sh")))
           (add-after 'unpack 'avoid-embedding-kernel-and-timestamps
             ;; For a reproducible build, avoid embedding the kernel version and
             ;; timestamps.
@@ -4124,15 +4110,9 @@ (define-public virtuoso-ose
                         "appsrc/ODS-FeedManager/make_vad.sh"
                         "appsrc/ODS-Bookmark/make_vad.sh"
                         "appsrc/ODS-Addressbook/make_vad.sh"
-                        "binsrc/dbpedia/make_vad.sh"
                         "binsrc/samples/demo/make_vad.sh"
                         "binsrc/samples/demo/mkdoc.sh"
-                        "binsrc/samples/sparql_demo/make_vad.sh"
-                        "binsrc/bpel/make_vad.sh"
-                        "binsrc/fct/make_vad.sh"
-                        "binsrc/rdf_mappers/make_vad.sh"
-                        "binsrc/isparql/make_vad.sh"
-                        "binsrc/conductor/mkvad.sh")
+                        "binsrc/rdf_mappers/make_vad.sh")
                 (("^UNAME_SYSTEM=.*") "UNAME_SYSTEM=unknown\n")
                 (("^UNAME_RELEASE=.*") "UNAME_RELEASE=unknown\n")
                 (("^PACKDATE=.*") "PACKDATE=2012-04-18\n")
@@ -4147,7 +4127,7 @@ (define-public virtuoso-ose
                '("libvirtuoso-t.a"
                  "libvirtuoso-t.la")))))))
     (native-inputs
-     (list autoconf automake bison flex gperf libtool))
+     (list autoconf automake bison flex gperf libtool python))
     (inputs
      (list openssl net-tools readline which zlib))
     (home-page "https://vos.openlinksw.com/owiki/wiki/VOS/")

base-commit: 6981f0adbf5becb63633213063ac943d59148c12
-- 
2.41.0

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