GNU bug report logs - #78978
[PATCH] gnu: python-dolfin-adjoint: Fix build.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Andreas Enge <andreas <at> enge.fr>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#78978: closed ([PATCH] gnu: python-dolfin-adjoint: Fix build.)
Date: Thu, 10 Jul 2025 10:10:04 +0000

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Your message dated Thu, 10 Jul 2025 12:09:17 +0200
with message-id <aG-RTVjf18S8-BBB <at> jurong>
and subject line Re: [PATCH] gnu: python-dolfin-adjoint: Fix build.
has caused the debbugs.gnu.org bug report #78978,
regarding [PATCH] gnu: python-dolfin-adjoint: Fix build.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


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78978: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=78978
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From: Paul Garlick <pgarlick <at> tourbillion-technology.com>
To: guix-patches <at> gnu.org
Cc: Paul Garlick <pgarlick <at> tourbillion-technology.com>
Subject: [PATCH] gnu: python-dolfin-adjoint: Fix build.
Date: Wed,  9 Jul 2025 12:52:14 +0100

* gnu/packages/simulation.scm (python-dolfin-adjoint): Fix build.
[arguments]: Set pytest import mode. Update list of failing tests.
[native-inputs]: Add python-setuptools and python-wheel, needed by
pyproject-build-system.
---
 gnu/packages/simulation.scm | 29 ++++++++++++-----------------
 1 file changed, 12 insertions(+), 17 deletions(-)

diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 7d7668f117..7b97d07ebe 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -1215,22 +1215,15 @@ (define-public python-dolfin-adjoint
       #~(list
          ;; Ignore tests which require missing packages and/or failed during
          ;; tests collection.
-         "--ignore=tests/firedrake_adjoint/test_assignment.py"
-         "--ignore=tests/firedrake_adjoint/test_burgers_newton.py"
-         "--ignore=tests/firedrake_adjoint/test_dynamic_meshes.py"
-         "--ignore=tests/firedrake_adjoint/test_hessian.py"
-         "--ignore=tests/firedrake_adjoint/test_reduced_functional.py"
-         "--ignore=tests/firedrake_adjoint/test_shape_derivatives.py"
-         "--ignore=tests/firedrake_adjoint/test_solving.py"
-         "--ignore=tests/firedrake_adjoint/test_tlm.py"
-         "--ignore=tests/migration/burgers_newton/test_burgers_newton.py"
-         "--ignore=tests/migration/linear_solver/test_linear_solver.py"
-         "--ignore=tests/migration/optimization_scipy/test_optimization_scipy.py"
-         "--ignore=tests/migration/projection/test_projection.py"
-         "--ignore=tests/migration/reduced_functional/test_reduced_functional.py"
-         "--ignore=tests/migration/split/test_split.py"
-         "-k" (string-append "not test_read_checkpoint"
-                             " and not test_krylov_solver_preconditioner_function_ctrl"))
+         "--import-mode=importlib"
+         "--ignore=tests/firedrake_adjoint"
+         "--ignore=tests/fenics_adjoint/test_dynamic_meshes.py"
+         "-k" (string-append "not test_sin_weak_spatial and "
+                             "not test_shape_hessian and "
+                             "not test_read_checkpoint and "
+                             "not test_lu_solver and "
+                             "not test_lu_solver_function_ctrl and "
+                             "not test_dirichletbc_subspace"))
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'build 'mpi-setup #$%openmpi-setup)
@@ -1257,7 +1250,9 @@ (define-public python-dolfin-adjoint
            python-decorator
            python-flake8
            python-pkgconfig
-           python-pytest))
+           python-pytest
+           python-setuptools
+           python-wheel))
     (propagated-inputs
      (list python-scipy))
     (home-page "https://www.dolfin-adjoint.org")
-- 
2.39.5

[Message part 3 (message/rfc822, inline)]

From: Andreas Enge <andreas <at> enge.fr>
To: Paul Garlick <pgarlick <at> tourbillion-technology.com>
Cc: 78978-done <at> debbugs.gnu.org
Subject: Re: [PATCH] gnu: python-dolfin-adjoint: Fix build.
Date: Thu, 10 Jul 2025 12:09:17 +0200

Am Wed, Jul 09, 2025 at 12:52:14PM +0100 schrieb Paul Garlick:
> * gnu/packages/simulation.scm (python-dolfin-adjoint): Fix build.
> [arguments]: Set pytest import mode. Update list of failing tests.
> [native-inputs]: Add python-setuptools and python-wheel, needed by
> pyproject-build-system.

Pushed, thanks!

Andreas

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