From unknown Thu Jun 19 14:31:23 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#78182] [PATCH v1] gnu: python-h5py: Update to 3.13.0. 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envelope-from=jakob.kirsch@web.de; helo=mout.web.de X-Spam_score_int: -27 X-Spam_score: -2.8 X-Spam_bar: -- X-Spam_report: (-2.8 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_LOW=-0.7, RCVD_IN_MSPIKE_H3=0.001, RCVD_IN_MSPIKE_WL=0.001, RCVD_IN_VALIDITY_CERTIFIED_BLOCKED=0.001, RCVD_IN_VALIDITY_RPBL_BLOCKED=0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-xyz.scm (python-h5py): Update to 3.13.0. Change-Id: I312240bb0e84cbb18dc678d5e7aa6e8c18c09cfb =2D-- gnu/packages/python-xyz.scm | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 9691c48781..859bdc57bb 100644 =2D-- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -3872,20 +3872,23 @@ (define-public python-h5netcdf (define-public python-h5py (package (name "python-h5py") - (version "3.8.0") + (version "3.13.0") (source (origin (method url-fetch) (uri (pypi-uri "h5py" version)) (sha256 - (base32 "0pyr6z4h2xqbp49yx2i1401gl6yqh03h771zslwcy0201hpxiskg")))= ) + (base32 "1hq5f5mnkv2138xsq7k7qncf6b7zc0cmm2fhhpd2603j31jy8w0q")))= ) (build-system python-build-system) (arguments '(#:phases (modify-phases %standard-phases (add-after 'unpack 'fix-hdf5-paths (lambda* (#:key inputs #:allow-other-keys) (setenv "HDF5_DIR" - (assoc-ref inputs "hdf5"))))))) + (assoc-ref inputs "hdf5")))) + (add-after 'unpack 'disable-broken-test + ; see https://github.com/h5py/h5py/blob/92ec254bf7361= 27b8699e29090481bf5c78bbd49/h5py/tests/test_file.py#L227 + (lambda _ (substitute* "h5py/tests/test_file.py" (("\= "\"\"Page buffer size must be greater than file space page size.\"\"\"") "= return"))))))) (propagated-inputs (list python-six python-numpy)) (inputs (list hdf5)) (native-inputs (list pkg-config python-cython python-ipython base-commit: c8efb51982c3099a2a14b8412b2e258c522e94c5 =2D-=20 2.49.0 From unknown Thu Jun 19 14:31:23 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: Jakob Kirsch Subject: bug#78182: closed ([PATCH v1] gnu: python-h5py: Update to 3.13.0.) Message-ID: References: X-Gnu-PR-Message: they-closed 78182 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 78182@debbugs.gnu.org Date: Thu, 01 May 2025 15:58:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1746115082-14749-1" This is a multi-part message in MIME format... ------------=_1746115082-14749-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #78182: [PATCH v1] gnu: python-h5py: Update to 3.13.0. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 78182@debbugs.gnu.org. --=20 78182: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D78182 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1746115082-14749-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 78182-done) by debbugs.gnu.org; 1 May 2025 15:57:50 +0000 Received: from localhost ([127.0.0.1]:52485 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1uAWII-0003pK-C0 for submit@debbugs.gnu.org; Thu, 01 May 2025 11:57:50 -0400 Received: from mail-lf1-x134.google.com ([2a00:1450:4864:20::134]:43371) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.84_2) (envelope-from ) id 1uAWIF-0003ow-Cc for 78182-done@debbugs.gnu.org; Thu, 01 May 2025 11:57:48 -0400 Received: by mail-lf1-x134.google.com with SMTP id 2adb3069b0e04-54e9021d2b5so2842858e87.1 for <78182-done@debbugs.gnu.org>; Thu, 01 May 2025 08:57:47 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1746115060; x=1746719860; darn=debbugs.gnu.org; h=to:subject:message-id:date:from:mime-version:from:to:cc:subject :date:message-id:reply-to; bh=QwOAgP2F+NyQSJPeoGFDVHVwY4dBd/SI+7oqIlN14Bs=; b=Gk5f55uaz2bVLzaskimQTmO8TkKsyAzf5PQAFV9bYARNWh4knzWUnPfPcn0HJGTNuK tW4CE4WUQq16o8grewNzknC5EnrxSWi66MVyQwB0WLQIbDwjeLiB5QnQKlono6eUoBH3 ztoFGXCeSwYZ0JWBCNKyoODEhtt5fyOZ664wlaTFREry8COrGrlZoy7D+0L/vXfVk3xn k47+ZxZdpdO+JNhsDHG0sAHVYF26/nI/E0hh4/GhH4jPDNR4n8GH5MXZycTmUk+ryFbv toW93ztCIjhP+7qmBtCSFQRwdmanc9ZFXhOGR9kvX2bkpVOKwqU4wePAk/d9jMWa7loj 8vhA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1746115060; x=1746719860; h=to:subject:message-id:date:from:mime-version:x-gm-message-state :from:to:cc:subject:date:message-id:reply-to; bh=QwOAgP2F+NyQSJPeoGFDVHVwY4dBd/SI+7oqIlN14Bs=; b=rjnJv22waS1xYZbJTlAxbxBJ5StbXw8R9PD6vR97E3wNFrgvdWBwaHp1xyjkp0aVRL 4+GKe9oDECW+0F1KXORzWP24JzDEznE4wIHwgNbZ/03NPyWvOhVy1NK4WQRZZY94XCdj /uAlQsFRgqHHuxVY+JhwTZaZnN69P+MgG/+HnIuz/eCFkT0ErvV04SWtDyHdGEVIT1ZO X5GoVAlydz5CbkhLLaqb3lSHlUrv7qb2feGA4HUPxR7uYFM0nF5sCfUGGlWhZKCiQGeS 08Y4w1L2SnzDbhTRY05uByHOwRiP8JJhrRtL2CAnji8SpXTHDS2r+8GclGphZao3/vui 7CvA== X-Gm-Message-State: AOJu0Yw5PTnre4l7/leLPbjsBP4A+tzXODVIRW3eduDOZ2yZlvUOt+85 JuV1vt/9AhZM5x2qA0qj9agVpQeM8QoUhM1i5IVr/CNoY2nly8Hm/Be8WB6zhifdZdEwX6PLcO4 T48LICeLyuSQgCzJbLZ1Lk2jR5bzz8g== X-Gm-Gg: ASbGncuwG22PO2IyZQFHZKaeei8L/PbC81xUmzmSfqRGkaNVA41rg437HIo0UB3aB6l XyNLIFPYoj6hvxYD+Qauyjs9UKGFkLp8edv5ps3EbPjOH9cGPQ9LiQX5F2A1LXpAv/1EmwWVEHT 94l49318SxY3BlafQJKnSL4Q== X-Google-Smtp-Source: AGHT+IGYYGzGafkVR/n3t/uNA3rs9lk88MsFXcVhrlK2BQz4xas8KUabv2SB5K0k1XW27CEMf2edmgcEZ3KUjiYnjDM= X-Received: by 2002:a05:6512:2c92:b0:54b:117f:686f with SMTP id 2adb3069b0e04-54ea7b26445mr780626e87.28.1746115060025; Thu, 01 May 2025 08:57:40 -0700 (PDT) MIME-Version: 1.0 From: Sharlatan Hellseher Date: Thu, 1 May 2025 16:57:29 +0100 X-Gm-Features: ATxdqUEBD6oRp9Cj9BrSEktg2U-rWRi4YrtENASNb0Sk0IDf_98rVB7Y-pLQpIo Message-ID: Subject: [PATCH v1] gnu: python-h5py: Update to 3.13.0. To: 78182-done@debbugs.gnu.org Content-Type: multipart/alternative; boundary="000000000000e3cd6006341517c7" X-Spam-Score: 3.1 (+++) X-Spam-Report: Spam detection software, running on the system "debbugs.gnu.org", has NOT identified this incoming email as spam. The original message has been attached to this so you can view it or label similar future email. If you have any questions, see the administrator of that system for details. Content preview: Hi, It was updated in https://git.savannah.gnu.org/cgit/guix.git/commit/?id=93f4a0db0675fe847e1fb6bcd740393e0ddb4ceb Closing as not applied. 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The original message has been attached to this so you can view it or label similar future email. If you have any questions, see the administrator of that system for details. Content preview: Hi, It was updated in https://git.savannah.gnu.org/cgit/guix.git/commit/?id=93f4a0db0675fe847e1fb6bcd740393e0ddb4ceb Closing as not applied. Content analysis details: (2.1 points, 10.0 required) pts rule name description ---- ---------------------- -------------------------------------------------- -0.0 RCVD_IN_DNSWL_NONE RBL: Sender listed at https://www.dnswl.org/, no trust [2a00:1450:4864:20:0:0:0:134 listed in] [list.dnswl.org] 0.0 FREEMAIL_FROM Sender email is commonly abused enduser mail provider (sharlatanus[at]gmail.com) -0.0 SPF_PASS SPF: sender matches SPF record 0.0 PDS_OTHER_BAD_TLD Untrustworthy TLDs [URI: github.incerto.xyz (xyz)] 0.0 SPF_HELO_NONE SPF: HELO does not publish an SPF Record 0.0 HTML_MESSAGE BODY: HTML included in message 3.1 MIXED_ES Too many es are not es -1.0 MAILING_LIST_MULTI Multiple indicators imply a widely-seen list manager --000000000000e3cd6006341517c7 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: base64 SGksDQoNCkl0IHdhcyB1cGRhdGVkIGluDQpodHRwczovL2dpdC5zYXZhbm5haC5nbnUub3JnL2Nn aXQvZ3VpeC5naXQvY29tbWl0Lz9pZD05M2Y0YTBkYjA2NzVmZTg0N2UxZmI2YmNkNzQwMzkzZTBk ZGI0Y2ViDQoNCkNsb3NpbmcgYXMgbm90IGFwcGxpZWQuDQoNClRoYW5rcy4NCg0KVkNTOiBodHRw czovL2dpdGh1Yi5pbmNlcnRvLnh5ei87IGh0dHBzOi8vZ2l0LnNyLmh0L35oZWxsc2VoZXIvDQpH UEc6IDk4NDcgODFERSA2ODlDIDIxQzIgNjQxOCAwODY3IDc2RDcgMjdCRiBGNjJDIEQyQjUNCg0K 4oCmINC90LDRiCDRgNCw0LfRg9C8IC0g0L/RgNC10LLQvtGB0YXQvtC00L3QsNGPINC+0LHRitGP 0YHQvdC40YLQtdC70YzQvdCw0Y8g0LzQsNGI0LjQvdCwINC60L7RgtC+0YDQsNGPINGB0L/QvtGB 0L7QsdC90LAg0L3QsNC50YLQuA0K0YHQvNGL0YHQuyDQv9C+0YfRgtC4INCyINGH0LXQvCDRg9Cz 0L7QtNC90L4sINC40YHRgtC+0LvQutC+0LLQsNGC0Ywg0LvRjtCx0L7QuSDRhNC10L3QvtC80LXQ vSwg0L3QviDRgdC+0LLQtdGA0YjQtdC90L3QviDQvdC1INCyDQrRgdC+0YHRgtC+0Y/QvdC40Lgg 0L/RgNC40L3Rj9GC0Ywg0LzRi9GB0LvRjCDQviDQvdC10L/RgNC10LTRgdC60LDQt9GD0LXQvNC+ 0YHRgtC4Lg0K --000000000000e3cd6006341517c7 Content-Type: text/html; 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Change-Id: I312240bb0e84cbb18dc678d5e7aa6e8c18c09cfb =2D-- gnu/packages/python-xyz.scm | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 9691c48781..859bdc57bb 100644 =2D-- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -3872,20 +3872,23 @@ (define-public python-h5netcdf (define-public python-h5py (package (name "python-h5py") - (version "3.8.0") + (version "3.13.0") (source (origin (method url-fetch) (uri (pypi-uri "h5py" version)) (sha256 - (base32 "0pyr6z4h2xqbp49yx2i1401gl6yqh03h771zslwcy0201hpxiskg")))= ) + (base32 "1hq5f5mnkv2138xsq7k7qncf6b7zc0cmm2fhhpd2603j31jy8w0q")))= ) (build-system python-build-system) (arguments '(#:phases (modify-phases %standard-phases (add-after 'unpack 'fix-hdf5-paths (lambda* (#:key inputs #:allow-other-keys) (setenv "HDF5_DIR" - (assoc-ref inputs "hdf5"))))))) + (assoc-ref inputs "hdf5")))) + (add-after 'unpack 'disable-broken-test + ; see https://github.com/h5py/h5py/blob/92ec254bf7361= 27b8699e29090481bf5c78bbd49/h5py/tests/test_file.py#L227 + (lambda _ (substitute* "h5py/tests/test_file.py" (("\= "\"\"Page buffer size must be greater than file space page size.\"\"\"") "= return"))))))) (propagated-inputs (list python-six python-numpy)) (inputs (list hdf5)) (native-inputs (list pkg-config python-cython python-ipython base-commit: c8efb51982c3099a2a14b8412b2e258c522e94c5 =2D-=20 2.49.0 ------------=_1746115082-14749-1--