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charset=UTF-8; format=flowed Content-Transfer-Encoding: 7bit Received-SPF: pass client-ip=23.83.220.51; envelope-from=nomike@nomike.com; helo=dragonfly.yew.relay.mailchannels.net X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_NONE=-0.0001, RCVD_IN_VALIDITY_CERTIFIED_BLOCKED=0.001, RCVD_IN_VALIDITY_RPBL_BLOCKED=0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) Hi! I just found out, that the package r-r4rna is defined twice: https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/bioconductor.scm#n10119 https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/bioinformatics.scm#n15070 It's different versions, but we probably want to either have only one, or have them in one file with different variable names. Cheers nomike From unknown Sun Sep 07 16:50:36 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: "nomike (they/them)" Subject: bug#78173: closed (Re: Duplicate package r-r4rna) Message-ID: References: <200e835c-697f-431b-8b4c-352707aad8cb@nomike.com> X-Gnu-PR-Message: they-closed 78173 X-Gnu-PR-Package: guix Reply-To: 78173@debbugs.gnu.org Date: Fri, 01 Aug 2025 16:34:03 +0000 Content-Type: multipart/mixed; boundary="----------=_1754066043-9851-1" This is a multi-part message in MIME format... ------------=_1754066043-9851-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #78173: Duplicate package r-r4rna which was filed against the guix package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 78173@debbugs.gnu.org. --=20 78173: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D78173 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1754066043-9851-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 78173-done) by debbugs.gnu.org; 1 Aug 2025 16:33:11 +0000 Received: from localhost ([127.0.0.1]:56904 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1uhsgw-0002W4-Hj for submit@debbugs.gnu.org; Fri, 01 Aug 2025 12:33:11 -0400 Received: from hera.aquilenet.fr ([185.233.100.1]:57820) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1uhsgm-0002V2-5A for 78173-done@debbugs.gnu.org; Fri, 01 Aug 2025 12:33:06 -0400 Received: from localhost (localhost [127.0.0.1]) by hera.aquilenet.fr (Postfix) with ESMTP id 736373B0; Fri, 1 Aug 2025 18:32:52 +0200 (CEST) Authentication-Results: hera.aquilenet.fr; none X-Virus-Scanned: Debian amavis at hera.aquilenet.fr Received: from hera.aquilenet.fr ([127.0.0.1]) by localhost (hera.aquilenet.fr [127.0.0.1]) (amavis, port 10024) with ESMTP id fdXtGLHGek9P; Fri, 1 Aug 2025 18:32:51 +0200 (CEST) Received: from jurong (86.56.141.77.rev.sfr.net [77.141.56.86]) by hera.aquilenet.fr (Postfix) with ESMTPSA id 5FF1955; Fri, 1 Aug 2025 18:32:50 +0200 (CEST) Date: Fri, 1 Aug 2025 18:32:49 +0200 From: Andreas Enge To: "nomike (they/them)" Subject: Re: Duplicate package r-r4rna Message-ID: References: <200e835c-697f-431b-8b4c-352707aad8cb@nomike.com> MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline In-Reply-To: <200e835c-697f-431b-8b4c-352707aad8cb@nomike.com> X-Spamd-Result: default: False [-5.60 / 15.00]; NEURAL_HAM(-3.00)[-1.000]; BAYES_HAM(-3.00)[99.97%]; MID_RHS_NOT_FQDN(0.50)[]; MIME_GOOD(-0.10)[text/plain]; RCVD_COUNT_TWO(0.00)[2]; FROM_EQ_ENVFROM(0.00)[]; MIME_TRACE(0.00)[0:+]; RCPT_COUNT_TWO(0.00)[2]; TO_MATCH_ENVRCPT_ALL(0.00)[]; RCVD_VIA_SMTP_AUTH(0.00)[]; RCVD_TLS_ALL(0.00)[]; FROM_HAS_DN(0.00)[]; TO_DN_SOME(0.00)[]; ARC_NA(0.00)[] X-Rspamd-Action: no action X-Rspamd-Queue-Id: 736373B0 X-Rspamd-Server: hera X-Spamd-Bar: ----- X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 78173-done Cc: 78173-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Am Thu, May 01, 2025 at 06:06:35AM +0200 schrieb nomike (they/them): > I just found out, that the package r-r4rna is defined twice: > https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/bioconductor.scm#n10119 > https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/bioinformatics.scm#n15070 Good catch! I have removed one of them, thanks. 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I just found out, that the package r-r4rna is defined twice: https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/bioconductor.scm#n10119 https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/bioinformatics.scm#n15070 It's different versions, but we probably want to either have only one, or have them in one file with different variable names. Cheers nomike ------------=_1754066043-9851-1--