GNU bug report logs - #78169
[PATCH] gnu: Rname bioinformatics clipper to bioinformatics clipper=peak to avoid naming conflict with cpp clipper.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Christopher Baines <mail <at> cbaines.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#78169: closed ([PATCH] gnu: Rname bioinformatics clipper to
 bioinformatics clipper=peak to avoid naming conflict with cpp clipper.)
Date: Mon, 26 May 2025 15:21:02 +0000

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Your message dated Mon, 26 May 2025 16:20:19 +0100
with message-id <87v7pnjt58.fsf <at> cbaines.net>
and subject line Re: [bug#78169] [PATCH v2] gnu: Rename clipper to clipper-peak.
has caused the debbugs.gnu.org bug report #78169,
regarding [PATCH] gnu: Rname bioinformatics clipper to bioinformatics clipper=peak to avoid naming conflict with cpp clipper.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
78169: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=78169
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: nomike <nomike <at> nomike.com>
To: guix-patches <at> gnu.org
Cc: nomike <nomike <at> nomike.com>
Subject: [PATCH] gnu: Rname bioinformatics clipper to bioinformatics
 clipper=peak to avoid naming conflict with cpp clipper.
Date: Thu,  1 May 2025 03:22:00 +0200

Change-Id: I31bf7578158712cc042dbbb7a6cfb1187c2329be
---
 gnu/packages/bioinformatics.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0d27d1e232..715be69206 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -27,6 +27,7 @@
 ;;; Copyright © 2022 Antero Mejr <antero <at> mailbox.org>
 ;;; Copyright © 2024 Alexis Simon <alexis.simon <at> runbox.com>
 ;;; Copyright © 2024 Spencer King <spencer.king <at> geneoscopy.com>
+;;; Copyright © 2025 nomike Postmann <nomike <at> nomike.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -6023,9 +6024,9 @@ (define-public cd-hit-auxtools
                         '("cd-hit-dup" "cd-hit-lap" "read-linker")))))))
     (inputs '())))
 
-(define-public clipper
+(define-public clipper-peak
   (package
-    (name "clipper")
+    (name "clipper-peak")
     (version "2.0.1")
     (source (origin
               (method git-fetch)
-- 
2.49.0

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From: Christopher Baines <mail <at> cbaines.net>
To: nomike <nomike <at> nomike.com>
Cc: 78169-done <at> debbugs.gnu.org, Nicolas Graves <ngraves <at> ngraves.fr>
Subject: Re: [bug#78169] [PATCH v2] gnu: Rename clipper to clipper-peak.
Date: Mon, 26 May 2025 16:20:19 +0100

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nomike <nomike <at> nomike.com> writes:

> There's a naming conflict with cpp/bioinformatics clipper.
>
> * gnu/packages/bioinformatics.scm
>   (clipper): Delete variable, renamed to clipper-peak.
>   (clipper-peak): New variable, renamed from clipper.
>
> Change-Id: I1411fe0eebf4ff322e4dadfbe53758feddc36599
> ---
>  gnu/packages/bioinformatics.scm | 5 +++--
>  1 file changed, 3 insertions(+), 2 deletions(-)

Thanks both, I've pushed this to master as
8b84a2302c5390d257d64a6d431906a5a3695a3e.

Chris

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