Subject: bug#78169: closed (Re: [bug#78169] [PATCH v2] gnu: Rename clipper to clipper-peak.)

From: [email-masked] (GNU bug Tracking System)
Date: Mon, 26 May 2025 15:21:02 +0000

Your bug report

#78169: [PATCH] gnu: Rname bioinformatics clipper to bioinformatics clipper=peak to avoid naming conflict with cpp clipper.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to [email-masked].

-- 
78169: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=78169
GNU Bug Tracking System
Contact [email-masked] with problems

Subject: Re: [bug#78169] [PATCH v2] gnu: Rename clipper to clipper-peak.
From: Christopher Baines <[email-masked]>
To: nomike <[email-masked]>
Cc: [email-masked], Nicolas Graves <[email-masked]>
Date: Mon, 26 May 2025 16:20:19 +0100
List-Id: <debbugs-submit.debbugs.gnu.org>

nomike <[email-masked]> writes:

> There's a naming conflict with cpp/bioinformatics clipper.
>
> * gnu/packages/bioinformatics.scm
>   (clipper): Delete variable, renamed to clipper-peak.
>   (clipper-peak): New variable, renamed from clipper.
>
> Change-Id: I1411fe0eebf4ff322e4dadfbe53758feddc36599
> ---
>  gnu/packages/bioinformatics.scm | 5 +++--
>  1 file changed, 3 insertions(+), 2 deletions(-)

Thanks both, I've pushed this to master as
8b84a2302c5390d257d64a6d431906a5a3695a3e.

Chris

Subject: [PATCH] gnu: Rname bioinformatics clipper to bioinformatics clipper=peak to avoid naming conflict with cpp clipper.
From: nomike <[email-masked]>
To: [email-masked]
Cc: nomike <[email-masked]>
Date: Thu, 1 May 2025 03:22:00 +0200
List-Id: <debbugs-submit.debbugs.gnu.org>

Change-Id: I31bf7578158712cc042dbbb7a6cfb1187c2329be
---
 gnu/packages/bioinformatics.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0d27d1e232..715be69206 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -27,6 +27,7 @@
 ;;; Copyright © 2022 Antero Mejr <[email-masked]>
 ;;; Copyright © 2024 Alexis Simon <[email-masked]>
 ;;; Copyright © 2024 Spencer King <[email-masked]>
+;;; Copyright © 2025 nomike Postmann <[email-masked]>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -6023,9 +6024,9 @@ (define-public cd-hit-auxtools
                         '("cd-hit-dup" "cd-hit-lap" "read-linker")))))))
     (inputs '())))
 
-(define-public clipper
+(define-public clipper-peak
   (package
-    (name "clipper")
+    (name "clipper-peak")
     (version "2.0.1")
     (source (origin
               (method git-fetch)
-- 
2.49.0