From debbugs-submit-bounces@debbugs.gnu.org Wed Apr 30 07:25:52 2025 Received: (at submit) by debbugs.gnu.org; 30 Apr 2025 11:25:52 +0000 Received: from localhost ([127.0.0.1]:40316 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1uA5ZX-0007r1-QJ for submit@debbugs.gnu.org; Wed, 30 Apr 2025 07:25:52 -0400 Received: from lists.gnu.org ([2001:470:142::17]:43342) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1uA5ZR-0007qW-GU for submit@debbugs.gnu.org; Wed, 30 Apr 2025 07:25:48 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1uA5ZJ-0007Q0-La for guix-patches@gnu.org; Wed, 30 Apr 2025 07:25:37 -0400 Received: from mout-p-102.mailbox.org ([80.241.56.152]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_CHACHA20_POLY1305:256) (Exim 4.90_1) (envelope-from ) id 1uA5ZG-0001js-UA for guix-patches@gnu.org; Wed, 30 Apr 2025 07:25:37 -0400 Received: from smtp1.mailbox.org (smtp1.mailbox.org [IPv6:2001:67c:2050:b231:465::1]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by mout-p-102.mailbox.org (Postfix) with ESMTPS id 4ZnZc51vPGz9tyS for ; Wed, 30 Apr 2025 13:25:25 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=claesson.fi; s=MBO0001; t=1746012325; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type; bh=p4a+eZeb67KAJeqtu1b56XM6oa2ws/zIk1h3aMB8MTA=; b=dYBCgDzql4mSzRF32tz+B6UQB5SDcgNts2BkgWiOkJIGQZ7i8NaoKRGPLpAC7c/djg+DIn 1ZU8+tJRKPmkhelQpVagX/u6YifnYyUvwR649kgM0GsWXRBTSJE9uSDSAUV07fT7ANYNG2 kJdO21Mf+1DpANGr672HVs3SweccTHrWXwAM4mI2mTv5CrfJMzVyf0GFxNbKcfHajY4OdA fCJ6kaPVKBtRPM4jfF40ySxr8XXsfzFO8amwlFpkSbyP8X5wUAyDmrlvDtbtsPzT1SVnSH 9Z4Q9AGFi+K1dpm7sB+WzlVj+Dz5cZTasXh1G+eJQaOTFRvQxhYVtYHB1Giz8Q== From: =?utf-8?Q?Tor-bj=C3=B6rn_Claesson?= To: guix-patches@gnu.org Subject: r-s4arrays: Update to 0.46.0 Date: Wed, 30 Apr 2025 14:25:23 +0300 Message-ID: <87a57x6gd8.fsf@claesson.fi> MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="=-=-=" X-Rspamd-Queue-Id: 4ZnZc51vPGz9tyS Received-SPF: pass client-ip=80.241.56.152; envelope-from=tor-bjorn@claesson.fi; helo=mout-p-102.mailbox.org X-Spam_score_int: -27 X-Spam_score: -2.8 X-Spam_bar: -- X-Spam_report: (-2.8 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_LOW=-0.7, RCVD_IN_VALIDITY_CERTIFIED_BLOCKED=0.001, RCVD_IN_VALIDITY_RPBL_BLOCKED=0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 1.0 (+) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.0 (/) --=-=-= Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Hi! When building dependents of r-posterior (https://issues.guix.gnu.org/78105)= , it turns out r-delayedmatrixstats fails. In order to fix this, we need to update r-iranges, which in turn depends on an updated r-s4arrays. This patch updates r-s4arrays from 0.44.0 to 0.46.0. I have built all directly dependent packages successfully, except for r-voltron, which has been failing on master since the 15/16:th of April.=20 Thanks! Tor-bj=C3=B6rn Claesson --=-=-= Content-Type: text/x-patch Content-Disposition: attachment; filename=0001-gnu-r-r-utils-Update-to-2.13.0.patch >From 1e587ae4bc3886e0405fa03210fa7478eb90e980 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tor-bj=C3=B6rn=20Claesson?= Date: Wed, 16 Apr 2025 14:51:29 +0300 Subject: [PATCH] gnu: r-r-utils: Update to 2.13.0. 2.12.3 failes in tests after the large r-updates merge, upgrading to 2.13.0 allows it to build again. Change-Id: I2ceec2f270df040e6bdd1ad87e8dd673e29c3964 --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 7d81619ca1..fb23142c02 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1818,13 +1818,13 @@ (define-public r-r-oo (define-public r-r-utils (package (name "r-r-utils") - (version "2.12.3") + (version "2.13.0") (source (origin (method url-fetch) (uri (cran-uri "R.utils" version)) (sha256 (base32 - "03640a1v8jk9k9s5xirdia9lngb53gh4p9gyj2j82cx2jmxfgmkl")))) + "09fg7f0z0zdxjndfwmcsyi2z54bp7xxcwdx0hpzji68j9v1l685b")))) (properties `((upstream-name . "R.utils"))) (build-system r-build-system) (arguments -- 2.49.0 --=-=-=-- From debbugs-submit-bounces@debbugs.gnu.org Wed Apr 30 09:12:46 2025 Received: (at 78163-done) by debbugs.gnu.org; 30 Apr 2025 13:12:46 +0000 Received: from localhost ([127.0.0.1]:40700 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1uA7F0-0007sq-18 for submit@debbugs.gnu.org; Wed, 30 Apr 2025 09:12:46 -0400 Received: from hera.aquilenet.fr ([185.233.100.1]:57490) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1uA7Ew-0007sS-Rx for 78163-done@debbugs.gnu.org; Wed, 30 Apr 2025 09:12:43 -0400 Received: from localhost (localhost [127.0.0.1]) by hera.aquilenet.fr (Postfix) with ESMTP id 276CA8B5; Wed, 30 Apr 2025 15:12:36 +0200 (CEST) Authentication-Results: hera.aquilenet.fr; none X-Virus-Scanned: Debian amavis at hera.aquilenet.fr Received: from hera.aquilenet.fr ([127.0.0.1]) by localhost (hera.aquilenet.fr [127.0.0.1]) (amavis, port 10024) with ESMTP id V5CCiA3isueb; Wed, 30 Apr 2025 15:12:35 +0200 (CEST) Received: from jurong (176-179-191-150.abo.bbox.fr [176.179.191.150]) by hera.aquilenet.fr (Postfix) with ESMTPSA id 118231D0; Wed, 30 Apr 2025 15:12:34 +0200 (CEST) Date: Wed, 30 Apr 2025 15:12:33 +0200 From: Andreas Enge To: =?iso-8859-15?Q?Tor-bj=F6rn?= Claesson Subject: Re: r-s4arrays: Update to 0.46.0 Message-ID: References: <87a57x6gd8.fsf@claesson.fi> MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline In-Reply-To: <87a57x6gd8.fsf@claesson.fi> X-Rspamd-Queue-Id: 276CA8B5 X-Spamd-Result: default: False [5.40 / 15.00]; SPAM_FLAG(5.00)[]; BAYES_HAM(-3.00)[99.99%]; NEURAL_SPAM(3.00)[1.000]; MID_RHS_NOT_FQDN(0.50)[]; MIME_GOOD(-0.10)[text/plain]; TO_DN_SOME(0.00)[]; MIME_TRACE(0.00)[0:+]; RCVD_VIA_SMTP_AUTH(0.00)[]; RCVD_COUNT_TWO(0.00)[2]; RCPT_COUNT_THREE(0.00)[3]; FROM_EQ_ENVFROM(0.00)[]; RCVD_TLS_ALL(0.00)[]; FROM_HAS_DN(0.00)[]; TO_MATCH_ENVRCPT_ALL(0.00)[]; ARC_NA(0.00)[] X-Spamd-Bar: +++++ X-Rspamd-Action: greylist X-Rspamd-Server: hera X-Spam-Level: ***** X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 78163-done Cc: 78163-done@debbugs.gnu.org, Ricardo Wurmus X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hello, something went wrong with your patch submission, I only see one for r-r-utils, but which is already at version 2.13.0 on master. More generally, there is a new r-team branch; it might be useful to try this out and see whether your packages are already updated there. I am closing this bug report, please give it a new try! If you manage to get "git send-email" working, an additional bonus would be that the R team is cc-ed on your patches. If not, when running "./etc/teams.scm cc r" you see a list of email addresses that you could cc manually: --add-header="X-Debbugs-Cc: laurent.gatto@gmail.com, rekado@elephly.net, zimon.toutoune@gmail.com" Andreas From debbugs-submit-bounces@debbugs.gnu.org Wed Apr 30 10:31:31 2025 Received: (at 78163-done) by debbugs.gnu.org; 30 Apr 2025 14:31:31 +0000 Received: from localhost ([127.0.0.1]:43563 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1uA8TC-0007OI-IH for submit@debbugs.gnu.org; Wed, 30 Apr 2025 10:31:30 -0400 Received: from mout-p-101.mailbox.org ([2001:67c:2050:0:465::101]:45276) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1uA8T6-0007Nm-BP for 78163-done@debbugs.gnu.org; Wed, 30 Apr 2025 10:31:28 -0400 Received: from smtp1.mailbox.org (smtp1.mailbox.org [IPv6:2001:67c:2050:b231:465::1]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by mout-p-101.mailbox.org (Postfix) with ESMTPS id 4ZnfkS5P4vz9smV; Wed, 30 Apr 2025 16:31:12 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=claesson.fi; s=MBO0001; t=1746023472; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding: in-reply-to:in-reply-to:references:references; bh=VaiA+hXMsG6UIkZQIiTAoEJ7YByUPjWS1VEomtwdif0=; b=B+m1jRoEqNa9kEOMolxhxjXBUE+OkmGqWgikZiKZpTRZdhhhRUHYCZa5W363bobwPDHYIv m238dAjf1LVx0bP8btdEcDtYbHJkf9zlxR/aAqumbarAfkUVoBVaqmU/17Bo1J/W9dNrvW 9EesfZMn+D3C5WsHg6xasjqz+zWwsocINGH0IdlmbF0oxNnbdObG+rsRiz0aC3qYCg/PYZ vZGSXRwS10ZloTaatPYtA2/4NFWp99L0lfHjx/HwKx9uuV/LxdcgrHsD7EtwpPjvIka3Il rXz5S+D6odLff9s7TCDy4Z0dX98sow3c126+wFBXVx86hdWkGr2DOYeBM9ve1Q== Date: Wed, 30 Apr 2025 17:31:11 +0300 From: =?ISO-8859-1?Q?Tor-bj=F6rn_Claesson?= To: Andreas Enge Subject: Re: r-s4arrays: Update to 0.46.0 In-Reply-To: References: <87a57x6gd8.fsf@claesson.fi> Message-ID: <15ED5596-870B-49CB-ABF6-6AF8DCFD14AA@claesson.fi> MIME-Version: 1.0 Content-Type: multipart/alternative; boundary=----LA3I2JZL6ND4W32MQLI7ZIU1PEXAXY Content-Transfer-Encoding: 7bit X-Rspamd-Queue-Id: 4ZnfkS5P4vz9smV X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 78163-done Cc: 78163-done@debbugs.gnu.org, Ricardo Wurmus X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) ------LA3I2JZL6ND4W32MQLI7ZIU1PEXAXY Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Hi! Thanks!=20 I checked, and as Ricardo wrote, this is already fixed in the r-team branc= h=2E=20 I seem to have really bad luck sending patches by hand, so I will make sur= e to get git send-mail going before i try any more :) Thanks again for the help! Torbj=C3=B6rn Den 30 april 2025 16=2E12=2E33 EEST, Andreas Enge skre= v: >Hello, > >something went wrong with your patch submission, I only see one for >r-r-utils, but which is already at version 2=2E13=2E0 on master=2E > >More generally, there is a new r-team branch; it might be useful to >try this out and see whether your packages are already updated there=2E > >I am closing this bug report, please give it a new try! > >If you manage to get "git send-email" working, an additional bonus would >be that the R team is cc-ed on your patches=2E > >If not, when running "=2E/etc/teams=2Escm cc r" you see a list of email >addresses that you could cc manually: > --add-header=3D"X-Debbugs-Cc: laurent=2Egatto@gmail=2Ecom, rekado@elep= hly=2Enet, zimon=2Etoutoune@gmail=2Ecom" > >Andreas > ------LA3I2JZL6ND4W32MQLI7ZIU1PEXAXY Content-Type: text/html; charset=utf-8 Content-Transfer-Encoding: quoted-printable
Hi!

Thanks!

I che= cked, and as Ricardo wrote, this is already fixed in the r-team branch=2E <= br>
I seem to have really bad luck sending patches by hand, so I will ma= ke sure to get git send-mail going before i try any more :)

Thanks a= gain for the help!

Torbj=C3=B6rn


Den 30 april 2025 16=2E12=2E33 EEST, Andreas Enge &l= t;andreas@enge=2Efr> skrev:
Hello,

something went wrong=
 with your patch submission, I only see one for
r-r-utils, but which is =
already at version 2=2E13=2E0 on master=2E

More generally, there is =
a new r-team branch; it might be useful to
try this out and see whether =
your packages are already updated there=2E

I am closing this bug rep=
ort, please give it a new try!

If you manage to get "git send-email"=
 working, an additional bonus would
be that the R team is cc-ed on your =
patches=2E

If not, when running "=2E/etc/teams=2Escm cc r" you see a=
 list of email
addresses that you could cc manually:
   --add-header=
=3D"X-Debbugs-Cc: laurent=2Egatto@gmail=2Ecom, rekado@elephly=2Enet, zimon=
=2Etoutoune@gmail=2Ecom"

Andreas

------LA3I2JZL6ND4W32MQLI7ZIU1PEXAXY-- From unknown Sun Jun 22 22:46:40 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Thu, 29 May 2025 11:24:21 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator