From debbugs-submit-bounces@debbugs.gnu.org Mon Apr 28 02:47:33 2025 Received: (at submit) by debbugs.gnu.org; 28 Apr 2025 06:47:33 +0000 Received: from localhost ([127.0.0.1]:51451 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1u9IH7-00034k-0X for submit@debbugs.gnu.org; Mon, 28 Apr 2025 02:47:33 -0400 Received: from lists.gnu.org ([2001:470:142::17]:45366) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1u9IH3-00032g-7X for submit@debbugs.gnu.org; Mon, 28 Apr 2025 02:47:30 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1u9IGn-0006zj-5y for guix-patches@gnu.org; Mon, 28 Apr 2025 02:47:13 -0400 Received: from mout-p-102.mailbox.org ([2001:67c:2050:0:465::102]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_CHACHA20_POLY1305:256) (Exim 4.90_1) (envelope-from ) id 1u9IGi-0007uY-FQ for guix-patches@gnu.org; Mon, 28 Apr 2025 02:47:11 -0400 Received: from smtp2.mailbox.org (smtp2.mailbox.org [IPv6:2001:67c:2050:b231:465::2]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by mout-p-102.mailbox.org (Postfix) with ESMTPS id 4ZmDWk2jlpz9tm8 for ; Mon, 28 Apr 2025 08:46:58 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=claesson.fi; s=MBO0001; t=1745822818; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type; bh=dDH1dUDwJ6amWU017IIQZi7Jdi3vahIGwL9oRYjO/X0=; b=zD5jNYK7Vx83+RsfKMaADSOwVIrRrjbxsb2JLkJhioO8HplLsPllxQZJWfRhIEzNiJsbkM ZMDRmttZiF6/hlg11qCSi6wZJwZ6vcSh51S/FBnWrHinSmL+UfkTBB9KfIiPrLAy6m6psF d1P2eMkXB96pR8K1x/lH5FwmvF7u3fkL4nQ7EX7evJMUPLvBpMWQ0TOEsrUI7xO/HTMid4 WyZ+SoXG0xaxBVvEvBxfr7wU54CsQYDEhaiy3F9BmEwF2gkmFIO79ioiqddFnX/gc+b7/0 elSNukJmoV+F5qpTJoNhb9SCet5Dq3MFChK1HeK96ATfFIA2K147/fa6gq92+Q== From: =?utf-8?Q?Tor-bj=C3=B6rn_Claesson?= To: guix-patches@gnu.org Subject: r-posterior: Update to 1.6.1. Date: Mon, 28 Apr 2025 09:46:57 +0300 Message-ID: <87ldrk236m.fsf@claesson.fi> MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="=-=-=" X-Rspamd-Queue-Id: 4ZmDWk2jlpz9tm8 Received-SPF: pass client-ip=2001:67c:2050:0:465::102; envelope-from=tor-bjorn@claesson.fi; helo=mout-p-102.mailbox.org X-Spam_score_int: -27 X-Spam_score: -2.8 X-Spam_bar: -- X-Spam_report: (-2.8 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_LOW=-0.7, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 1.0 (+) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.0 (/) --=-=-= Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Hi! This patch updates r-posterior to 1.6.1. This fixes building, where 1.6.0 fails in testing. I have checked the generated package, it does not bundle any new javascript. I have not built all dependencies.=20 Cheers, Tor-bj=C3=B6rn --=-=-= Content-Type: text/x-patch Content-Disposition: attachment; filename=0001-gnu-r-posterior-update-to-1.6.1.patch >From ee5c464b1e235f7fb4f9d2b803c05bec0ff639ff Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tor-bj=C3=B6rn=20Claesson?= Date: Mon, 28 Apr 2025 09:38:19 +0300 Subject: [PATCH] gnu: r-posterior: update to 1.6.1. * gnu/packages/cran.scm (r-posterior): Update to 1.6.1. Change-Id: I4cd5597feaa0a0fabb3d576c1eaa70ba4ac7082f --- gnu/packages/cran.scm | 27 ++++++++++++--------------- 1 file changed, 12 insertions(+), 15 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 194133777e..38f6a3864b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -45588,28 +45588,25 @@ (define-public r-distributional (define-public r-posterior (package (name "r-posterior") - (version "1.6.0") + (version "1.6.1") (source (origin (method url-fetch) (uri (cran-uri "posterior" version)) (sha256 - (base32 - "037l1cav2vglcd2pgp8n89apfpsb3822mhzmdsxf7a0mzcwjlq9l")))) + (base32 "16d7gfg8mfx89gz365a6cjc5zl0vs0wbr2gcn8n597sc7yyxf1z5")))) (properties `((upstream-name . "posterior"))) (build-system r-build-system) - (propagated-inputs - (list r-abind - r-checkmate - r-distributional - r-matrixstats - r-pillar - r-rlang - r-tensora - r-tibble - r-vctrs)) - (native-inputs - (list r-knitr r-testthat)) + (propagated-inputs (list r-abind + r-checkmate + r-distributional + r-matrixstats + r-pillar + r-rlang + r-tensora + r-tibble + r-vctrs)) + (native-inputs (list r-knitr r-testthat)) (home-page "https://mc-stan.org/posterior/") (synopsis "Tools for working with posterior distributions") (description -- 2.49.0 --=-=-=-- From debbugs-submit-bounces@debbugs.gnu.org Mon Apr 28 05:11:50 2025 Received: (at 78105) by debbugs.gnu.org; 28 Apr 2025 09:11:50 +0000 Received: from localhost ([127.0.0.1]:53429 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1u9KWj-0006Od-RG for submit@debbugs.gnu.org; Mon, 28 Apr 2025 05:11:50 -0400 Received: from mout-p-102.mailbox.org ([80.241.56.152]:33326) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1u9KWd-0006Mc-OE for 78105@debbugs.gnu.org; Mon, 28 Apr 2025 05:11:45 -0400 Received: from smtp2.mailbox.org (smtp2.mailbox.org [10.196.197.2]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by mout-p-102.mailbox.org (Postfix) with ESMTPS id 4ZmHkY5Dh6z9tpP for <78105@debbugs.gnu.org>; Mon, 28 Apr 2025 11:11:33 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=claesson.fi; s=MBO0001; t=1745831493; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type; bh=vzhB/mzwy60ZurF28WZa/utHZUToCQoXNNMSQ5BmdbE=; b=t7fHPJ+BysmvZaghR1BL4r3Pl1/Rq1vMv1Vx0HjoEjTgBLkn9xfrALjMzLE1dF//hQF5AL C9HIsKui3uGVbiFO5liJNw0ezoYNiDEDPVXyPq9UIksnNeUlHh+Ij9lM49gVYRb8qINkfA yGq6qhkSPuYGxn5uS3g2uwAumi8uC7XGNg8+1OGxj24QdzchiPfgjzbL0B3vmtrShvDbYi tNW940BP07Oqvro6LzKhwu+YN8WAB2ngtlKeo7nQZpOKTOokBEzo210vL9HFOPErrqNP87 dJhA2OEJaVe/knOT5rOAUdlzJRERAU/AYGTwXxPhEVRmv1f8g5ugUWHf9Fi1ag== From: =?utf-8?Q?Tor-bj=C3=B6rn_Claesson?= To: 78105@debbugs.gnu.org Subject: Further patches Date: Mon, 28 Apr 2025 12:11:31 +0300 Message-ID: <87h6281who.fsf@claesson.fi> MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="=-=-=" X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 78105 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) --=-=-= Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Here is a patch series, which allows r-cardx to be built successfully :-) All patches in this series are point release package updates, fixing build failiures due to failing tests already addressed by the respective upstream projects. Cheers, Tor-bj=C3=B6rn Claesson --=-=-= Content-Type: text/x-patch Content-Disposition: attachment; filename=0002-gnu-r-rhub-Update-to-2.0.1.patch >From 7280fbe0dca6af51a32578d279e9092be53fda23 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tor-bj=C3=B6rn=20Claesson?= Date: Mon, 28 Apr 2025 10:15:39 +0300 Subject: [PATCH 2/4] gnu: r-rhub: Update to 2.0.1. * gnu/packages/cran.scm (r-rhub): Update to 2.0.1. Change-Id: Id6a5130c0bea6174c7303f78bee9d9a8ce32e07f --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 38f6a3864b..cf9b5022a9 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -38286,13 +38286,13 @@ (define-public r-rhpcblasctl (define-public r-rhub (package (name "r-rhub") - (version "2.0.0") + (version "2.0.1") (source (origin (method url-fetch) (uri (cran-uri "rhub" version)) (sha256 - (base32 "05q1jv7c2l09ssb72d17hhcisvzqmcd3d1njc1j6w8lhvc5kqs47")))) + (base32 "0fc291gy7zpx6mcpfw5sjjmx4y7lxhzh6n61mwwmz96nn4qb2m1q")))) (properties '((upstream-name . "rhub") (updater-extra-native-inputs . ("r-knitr")))) -- 2.49.0 --=-=-= Content-Type: text/x-patch Content-Disposition: attachment; filename=0003-gnu-r-datawizard-Update-to-1.0.2.patch >From c9ff77c73a67504f511eaa8aabf6ec1e8fe21ebd Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tor-bj=C3=B6rn=20Claesson?= Date: Mon, 28 Apr 2025 11:10:10 +0300 Subject: [PATCH 3/4] gnu: r-datawizard: Update to 1.0.2. * gnu/packages/cran.scm (r-datawizard): Update to 1.0.2. Change-Id: Ia0430f526dadafb4fbcd9f79a53b02f227ef0e2d --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index cf9b5022a9..a9791a4278 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2229,14 +2229,14 @@ (define-public r-data-table (define-public r-datawizard (package (name "r-datawizard") - (version "1.0.0") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "datawizard" version)) (sha256 (base32 - "0477ldja6n4ar3hxrlxs5qwfggdbdfcsz7i1dgv3vjsxlvdjwgyd")))) + "1qwb1gw7rwjcdbjb721grm8qirnijzg8sipb922l85g85kf8gwvz")))) (properties `((upstream-name . "datawizard") (updater-ignored-native-inputs -- 2.49.0 --=-=-= Content-Type: text/x-patch Content-Disposition: attachment; filename=0004-gnu-r-cardx-Update-to-0.2.4.patch >From 9964c45cdf2e7b86827ac233fbd8b06760b0010a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tor-bj=C3=B6rn=20Claesson?= Date: Mon, 28 Apr 2025 11:59:38 +0300 Subject: [PATCH 4/4] gnu: r-cardx: Update to 0.2.4. * gnu/packages/cran.scm (r-cardx): Update to 0.2.4. Change-Id: Ifdda20fd5346389091829c70c07568b4e0ffb48e --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a9791a4278..85773061d5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1168,13 +1168,13 @@ (define-public r-cards (define-public r-cardx (package (name "r-cardx") - (version "0.2.2") + (version "0.2.4") (source (origin (method url-fetch) (uri (cran-uri "cardx" version)) (sha256 - (base32 "0jsqldsmpfgm9hvsrb833l119xsmkm8nqwdbsl7p1vhn2km0f5dv")))) + (base32 "1qbfa2kbxbc7lnrajj79dgz2nkjf4616ngha1yk9fl6f10qmsk24")))) (properties `((upstream-name . "cardx"))) (build-system r-build-system) (propagated-inputs (list r-cards -- 2.49.0 --=-=-=-- From debbugs-submit-bounces@debbugs.gnu.org Tue Apr 29 12:53:24 2025 Received: (at 78105) by debbugs.gnu.org; 29 Apr 2025 16:53:24 +0000 Received: from localhost ([127.0.0.1]:59593 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1u9oCy-0002d9-1J for submit@debbugs.gnu.org; Tue, 29 Apr 2025 12:53:24 -0400 Received: from hera.aquilenet.fr ([185.233.100.1]:59266) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1u9oCu-0002bh-Df for 78105@debbugs.gnu.org; Tue, 29 Apr 2025 12:53:21 -0400 Received: from localhost (localhost [127.0.0.1]) by hera.aquilenet.fr (Postfix) with ESMTP id 4CD98567; Tue, 29 Apr 2025 18:53:13 +0200 (CEST) Authentication-Results: hera.aquilenet.fr; none X-Virus-Scanned: Debian amavis at hera.aquilenet.fr Received: from hera.aquilenet.fr ([127.0.0.1]) by localhost (hera.aquilenet.fr [127.0.0.1]) (amavis, port 10024) with ESMTP id t-JnhpQRW4El; Tue, 29 Apr 2025 18:53:12 +0200 (CEST) Received: from jurong (176-179-191-150.abo.bbox.fr [176.179.191.150]) by hera.aquilenet.fr (Postfix) with ESMTPSA id A5365210; Tue, 29 Apr 2025 18:53:11 +0200 (CEST) Date: Tue, 29 Apr 2025 18:53:09 +0200 From: Andreas Enge To: =?iso-8859-15?Q?Tor-bj=F6rn?= Claesson Subject: Re: [PATCH] gnu: r-posterior: update to 1.6.1. Message-ID: MIME-Version: 1.0 Content-Type: text/plain; charset=iso-8859-15 Content-Disposition: inline Content-Transfer-Encoding: 8bit X-Rspamd-Queue-Id: 4CD98567 X-Spamd-Result: default: False [6.40 / 15.00]; SPAM_FLAG(5.00)[]; BAYES_HAM(-3.00)[100.00%]; NEURAL_SPAM(3.00)[1.000]; FAKE_REPLY(1.00)[]; MID_RHS_NOT_FQDN(0.50)[]; MIME_GOOD(-0.10)[text/plain]; RCVD_COUNT_TWO(0.00)[2]; FROM_EQ_ENVFROM(0.00)[]; MIME_TRACE(0.00)[0:+]; TO_MATCH_ENVRCPT_ALL(0.00)[]; TO_DN_SOME(0.00)[]; RCVD_VIA_SMTP_AUTH(0.00)[]; RCVD_TLS_ALL(0.00)[]; FROM_HAS_DN(0.00)[]; RCPT_COUNT_THREE(0.00)[3]; ARC_NA(0.00)[] X-Spamd-Bar: ++++++ X-Rspamd-Action: add header X-Rspamd-Server: hera X-Spam-Level: ****** X-Spam: Yes X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 78105 Cc: Ricardo Wurmus , 78105@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hello Tor-björn, (and cc to our R specialist), thanks for your patches! Unfortunately mixing different patches in this way confuses QA. Could you please follow the description in https://guix.gnu.org/manual/devel/en/html_node/Submitting-Patches.html for future patches? Unrelated changes (like r-posterior and r-cardx) should be sent to separate issues, and related changes can be grouped into one issue, but then they should be sent using "git send-email", which will create one mail per patch and send it to the same address. When sending a new version of a patch or a series, make sure to use the "-v2", "-v3", ... flags to "git send-email". In this case, QA has only built one package, r-cardx: https://qa.guix.gnu.org/issue/78105 I suppose it has applied only the last patch, which is confirmed following the "View Git branch" or "View series on Patchwork" link on the previous page. So apparently r-cardx is a leaf package and can be updated independently of all the other packages. Hm, it depends on r-posterior, which fails to build, so maybe this is a series after all :) Strangely QA seems to have built it, but locally it fails. Concerning r-posterior, I tried to build its immediate dependencies using the command ./pre-inst-env guix build -P 1 r-posterior after applying your first patch (I would recommend to do so whenever you submit patches, and to mention this in your cover letter), but this results in a failure: ... build of /gnu/store/cbh0lsf80gkv8g1y0zlrx5j0dmrm7lzs-r-delayedmatrixstats-1.28.1.drv failed View build log at '/var/log/guix/drvs/cb/h0lsf80gkv8g1y0zlrx5j0dmrm7lzs-r-delayedmatrixstats-1.28.1.drv.gz'. cannot build derivation `/gnu/store/41ffhwrdk1x692wzgbcsv2wiqb5k5icp-r-scran-1.34.0.drv': 1 dependencies couldn't be built cannot build derivation `/gnu/store/3bbi85p6nd2d7n8hfm0z0fbxq7fmj9cs-r-scuttle-1.16.0.drv': 1 dependencies couldn't be built cannot build derivation `/gnu/store/isy948jcij3d4ri4v5ynvdbkdhv7xpib-r-basics-2.18.0.drv': 1 dependencies couldn't be built guix build: error: build of `/gnu/store/isy948jcij3d4ri4v5ynvdbkdhv7xpib-r-basics-2.18.0.drv' failed So for now, I am not going to apply any of your patches; if you could investigate further, this would be useful. Please keep me in cc when you send updated patches (as a "-v2"), since our current issue tracker does not keep people updated. Thanks! Andreas From debbugs-submit-bounces@debbugs.gnu.org Wed Apr 30 04:02:46 2025 Received: (at 78105) by debbugs.gnu.org; 30 Apr 2025 08:02:46 +0000 Received: from localhost ([127.0.0.1]:39260 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1uA2Oz-0007ex-QE for submit@debbugs.gnu.org; Wed, 30 Apr 2025 04:02:46 -0400 Received: from mout-p-102.mailbox.org ([80.241.56.152]:43114) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1uA2Ow-0007eV-KO for 78105@debbugs.gnu.org; Wed, 30 Apr 2025 04:02:43 -0400 Received: from smtp2.mailbox.org (smtp2.mailbox.org [10.196.197.2]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by mout-p-102.mailbox.org (Postfix) with ESMTPS id 4ZnV603fCcz9tlP; Wed, 30 Apr 2025 10:02:32 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=claesson.fi; s=MBO0001; t=1746000152; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding: in-reply-to:in-reply-to:references:references; bh=u959qnrR5Q08UNpyPm57RLLm6AuESSBlTpyXE8kHsmw=; b=DEwjk0BmcKrT2KZR8IEkb7PtiflcligrcHuaSKRer6xvAy8Q+zKxmHAqe6CPXBw1AEfNzN 833gygsbRWQe07nUeUQeBlTe3MX/RTOXBkTmEwV0rSPF7oNIB9wN0zmGWfo2Rb5Nvl/uYc MfvAYhWZnkMMMWZJ1JZEq3vKsKLE9yvHUGGpu6FmSsqCog4+cwrCiAYudvqoeZFmSZyIWU PUOLweIVUN1/ZPrI0wlKWCbgC+kxwEKDsWyvRk8dGwC8LszrJpeJnTWxv8XwROtdLfsybr G+UdzZSxS/uC4iU0N8Lk83WuPth0UyC//esiIBeGgiDuZ1IgxRvG0tV+yBu+EA== Date: Wed, 30 Apr 2025 11:02:30 +0300 (EEST) From: tor-bjorn@claesson.fi To: Andreas Enge Message-ID: <154431109.158835.1746000150653@office.mailbox.org> In-Reply-To: References: Subject: Re: [PATCH] gnu: r-posterior: update to 1.6.1. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable X-Priority: 3 Importance: Normal X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 78105 Cc: Ricardo Wurmus , 78105@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) Hi Andreas, thank you for taking the time to look at these patches! I am sorry that I caused a bit of a mess. This is because of inexperience o= n my part. Thank you for explaining the proper way to submit patches. My intention was to submit a series of changes that allow r-cardx to be bui= lt. The first of those was updating r-posterior. When fixing r-cardx turned= out to be easier than I expected, I got enthusiastic and decided to mail t= he whole series (which I understand was a mistake.) Sorry about this. The failure in building r-delayedmatrixstats is unrelated to updating r-pos= terior. The build segfaults in testing while calling .Call2("C_viewMeans_Rl= eViews", trim(x), na.rm, PACKAGE =3D "IRanges"). Updating r-delayedmatricstats, r-iranges, and multiple other dependencies o= f r-delayedmatrixstats and r-iranges) to the latest versions available on b= ioconductor fixes this. I will report separate issues for those changes, an= d submit the patches there. Slowly :-) After these fixes, it is possible to build the immediate dependents of r-po= sterior, r-rhub, r-datawizard, and r-cardx, as updated with the attached pa= tches. I am having some trouble getting git send-mail working, but will resend the= same patches (as -v2), one per email, with my usual email client, in the h= ope that the QA system understands them better=3D) Thanks, Tor-bj=C3=B6rn Claesson > P=C3=A5 2025-04-29 19:53 EEST skrev Andreas Enge : >=20 > =20 > Hello Tor-bj=C3=B6rn, > (and cc to our R specialist), >=20 > thanks for your patches! >=20 > Unfortunately mixing different patches in this way confuses QA. > Could you please follow the description in > https://guix.gnu.org/manual/devel/en/html_node/Submitting-Patches.html > for future patches? >=20 > Unrelated changes (like r-posterior and r-cardx) should be sent to > separate issues, and related changes can be grouped into one issue, > but then they should be sent using "git send-email", which will > create one mail per patch and send it to the same address. > When sending a new version of a patch or a series, make sure to use the > "-v2", "-v3", ... flags to "git send-email". >=20 > In this case, QA has only built one package, r-cardx: > https://qa.guix.gnu.org/issue/78105 > I suppose it has applied only the last patch, which is confirmed > following the "View Git branch" or "View series on Patchwork" link > on the previous page. >=20 > So apparently r-cardx is a leaf package and can be updated independently > of all the other packages. Hm, it depends on r-posterior, which fails to > build, so maybe this is a series after all :) Strangely QA seems to > have built it, but locally it fails. >=20 > Concerning r-posterior, I tried to build its immediate dependencies > using the command > ./pre-inst-env guix build -P 1 r-posterior > after applying your first patch (I would recommend to do so whenever you > submit patches, and to mention this in your cover letter), but this > results in a failure: > ... > build of /gnu/store/cbh0lsf80gkv8g1y0zlrx5j0dmrm7lzs-r-delayedmatrixstats= -1.28.1.drv failed > View build log at '/var/log/guix/drvs/cb/h0lsf80gkv8g1y0zlrx5j0dmrm7lzs-r= -delayedmatrixstats-1.28.1.drv.gz'. > cannot build derivation `/gnu/store/41ffhwrdk1x692wzgbcsv2wiqb5k5icp-r-sc= ran-1.34.0.drv': 1 dependencies couldn't be built > cannot build derivation `/gnu/store/3bbi85p6nd2d7n8hfm0z0fbxq7fmj9cs-r-sc= uttle-1.16.0.drv': 1 dependencies couldn't be built > cannot build derivation `/gnu/store/isy948jcij3d4ri4v5ynvdbkdhv7xpib-r-ba= sics-2.18.0.drv': 1 dependencies couldn't be built > guix build: error: build of `/gnu/store/isy948jcij3d4ri4v5ynvdbkdhv7xpib-= r-basics-2.18.0.drv' failed >=20 > So for now, I am not going to apply any of your patches; if you could > investigate further, this would be useful. >=20 > Please keep me in cc when you send updated patches (as a "-v2"), since > our current issue tracker does not keep people updated. >=20 > Thanks! >=20 > Andreas From debbugs-submit-bounces@debbugs.gnu.org Wed Apr 30 04:05:35 2025 Received: (at 78105) by debbugs.gnu.org; 30 Apr 2025 08:05:35 +0000 Received: from localhost ([127.0.0.1]:39281 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1uA2Ri-0007rF-ML for submit@debbugs.gnu.org; Wed, 30 Apr 2025 04:05:35 -0400 Received: from mout-p-103.mailbox.org ([2001:67c:2050:0:465::103]:48910) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1uA2Rg-0007qa-0b for 78105@debbugs.gnu.org; Wed, 30 Apr 2025 04:05:32 -0400 Received: from smtp102.mailbox.org (smtp102.mailbox.org [IPv6:2001:67c:2050:b231:465::102]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by mout-p-103.mailbox.org (Postfix) with ESMTPS id 4ZnV9D3767z9skF for <78105@debbugs.gnu.org>; Wed, 30 Apr 2025 10:05:20 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=claesson.fi; s=MBO0001; t=1746000320; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc:mime-version:mime-version:content-type:content-type: in-reply-to:in-reply-to:references:references; bh=+fvj1t17UIMU1ndy3X1/bQu9/2Z0WgpvyD2o3HXrSD4=; b=un7iPlAO5yWQuHAFemwxH/AsfkD67rwUaEbRkMy/UdPfys9NjPuL4uzSwa33IoXCeLYrad F7mlPWHE690oX1JVpGfVPT6DwTeGbZ3ddTTNgS8R2U9aoEx0QH2phGbraVHZbrcr4DQeAL 5a+fZjpLVb46jR2XzZMYgmBcNjQTcwqKOjOdTbOKLjPpU441Z3Dx3dwTKJclyTtHJYRn5T z++jfmVIA9OfxO+gX185fH76R6xoLHhOD+0Ngq7R92ffthqokf7yNGiPARBMuABnFjTCEE 3qSwdkRXgDavhVV8w1y+QrdbYDUTTold2w6elyri0wZ7Wm3wMuejuuaSjG7Lsw== From: =?utf-8?Q?Tor-bj=C3=B6rn_Claesson?= To: 78105@debbugs.gnu.org Subject: Re: [PATCH] gnu: r-posterior: update to 1.6.1. In-Reply-To: (Andreas Enge's message of "Tue, 29 Apr 2025 18:53:09 +0200") References: Date: Wed, 30 Apr 2025 11:05:19 +0300 Message-ID: <87zffy5b28.fsf@claesson.fi> MIME-Version: 1.0 Content-Type: text/x-patch Content-Disposition: attachment; filename=v2-0001-gnu-r-posterior-update-to-1.6.1.patch X-Rspamd-Queue-Id: 4ZnV9D3767z9skF X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 78105 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) >From ee5c464b1e235f7fb4f9d2b803c05bec0ff639ff Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tor-bj=C3=B6rn=20Claesson?= Date: Mon, 28 Apr 2025 09:38:19 +0300 Subject: [PATCH v2 1/4] gnu: r-posterior: update to 1.6.1. * gnu/packages/cran.scm (r-posterior): Update to 1.6.1. Change-Id: I4cd5597feaa0a0fabb3d576c1eaa70ba4ac7082f --- gnu/packages/cran.scm | 27 ++++++++++++--------------- 1 file changed, 12 insertions(+), 15 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 194133777e..38f6a3864b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -45588,28 +45588,25 @@ (define-public r-distributional (define-public r-posterior (package (name "r-posterior") - (version "1.6.0") + (version "1.6.1") (source (origin (method url-fetch) (uri (cran-uri "posterior" version)) (sha256 - (base32 - "037l1cav2vglcd2pgp8n89apfpsb3822mhzmdsxf7a0mzcwjlq9l")))) + (base32 "16d7gfg8mfx89gz365a6cjc5zl0vs0wbr2gcn8n597sc7yyxf1z5")))) (properties `((upstream-name . "posterior"))) (build-system r-build-system) - (propagated-inputs - (list r-abind - r-checkmate - r-distributional - r-matrixstats - r-pillar - r-rlang - r-tensora - r-tibble - r-vctrs)) - (native-inputs - (list r-knitr r-testthat)) + (propagated-inputs (list r-abind + r-checkmate + r-distributional + r-matrixstats + r-pillar + r-rlang + r-tensora + r-tibble + r-vctrs)) + (native-inputs (list r-knitr r-testthat)) (home-page "https://mc-stan.org/posterior/") (synopsis "Tools for working with posterior distributions") (description -- 2.49.0 From debbugs-submit-bounces@debbugs.gnu.org Wed Apr 30 04:06:17 2025 Received: (at 78105) by debbugs.gnu.org; 30 Apr 2025 08:06:17 +0000 Received: from localhost ([127.0.0.1]:39287 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1uA2SP-0007sk-Ee for submit@debbugs.gnu.org; Wed, 30 Apr 2025 04:06:17 -0400 Received: from mout-p-103.mailbox.org ([2001:67c:2050:0:465::103]:40084) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1uA2SM-0007sS-Q2 for 78105@debbugs.gnu.org; Wed, 30 Apr 2025 04:06:15 -0400 Received: from smtp202.mailbox.org (smtp202.mailbox.org [IPv6:2001:67c:2050:b231:465::202]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by mout-p-103.mailbox.org (Postfix) with ESMTPS id 4ZnVB719l8z9skF for <78105@debbugs.gnu.org>; Wed, 30 Apr 2025 10:06:07 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=claesson.fi; s=MBO0001; t=1746000367; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: in-reply-to:in-reply-to:references:references; bh=n1PI+5rJLRpZSYOkVqv14b70dKiVp4zn9fo+n7x7p+k=; b=xO/EgREBAPXjLNg2GeBFRLbzvPB9M33twdIc+Y4I2VtyA+wGheIrEmkUtYlZW0SVyvVQva oHAfYAOvKUFEWAHFtU1LpF4M/v3E3ZtvRc1sn2ztWNBcbxEE7e0p/i6jfmMNG471/xXUiL hnyRQOoPwA0uEK6WN3eUUeQ2U/jykwynEu2y2wNWnkd/2vofSULkc4bQrQ/SLlQXF+FK8b ZlUWarQEB33L9wJZenSEYabC71eJjXzSbni+EtPisMT60xex1Yc9YiI7ChmZzYDsTVAvY2 Riar3m+OnOmWzUL+3ZBeK8bdNlldBRxBkMkNgDC7zJsjTOzaMm0ygBnCIYOpKg== From: =?utf-8?Q?Tor-bj=C3=B6rn_Claesson?= To: 78105@debbugs.gnu.org Subject: Re: [PATCH] gnu: r-posterior: update to 1.6.1. In-Reply-To: <87zffy5b28.fsf@claesson.fi> (=?utf-8?Q?=22Tor-bj=C3=B6rn?= Claesson"'s message of "Wed, 30 Apr 2025 11:05:19 +0300") References: <87zffy5b28.fsf@claesson.fi> Date: Wed, 30 Apr 2025 11:06:05 +0300 Message-ID: <87selq5b0y.fsf@claesson.fi> MIME-Version: 1.0 Content-Type: text/x-patch Content-Disposition: attachment; filename=v2-0002-gnu-r-rhub-Update-to-2.0.1.patch X-Rspamd-Queue-Id: 4ZnVB719l8z9skF X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 78105 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) >From 7280fbe0dca6af51a32578d279e9092be53fda23 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tor-bj=C3=B6rn=20Claesson?= Date: Mon, 28 Apr 2025 10:15:39 +0300 Subject: [PATCH v2 2/4] gnu: r-rhub: Update to 2.0.1. * gnu/packages/cran.scm (r-rhub): Update to 2.0.1. Change-Id: Id6a5130c0bea6174c7303f78bee9d9a8ce32e07f --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 38f6a3864b..cf9b5022a9 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -38286,13 +38286,13 @@ (define-public r-rhpcblasctl (define-public r-rhub (package (name "r-rhub") - (version "2.0.0") + (version "2.0.1") (source (origin (method url-fetch) (uri (cran-uri "rhub" version)) (sha256 - (base32 "05q1jv7c2l09ssb72d17hhcisvzqmcd3d1njc1j6w8lhvc5kqs47")))) + (base32 "0fc291gy7zpx6mcpfw5sjjmx4y7lxhzh6n61mwwmz96nn4qb2m1q")))) (properties '((upstream-name . "rhub") (updater-extra-native-inputs . ("r-knitr")))) -- 2.49.0 From debbugs-submit-bounces@debbugs.gnu.org Wed Apr 30 04:06:39 2025 Received: (at 78105) by debbugs.gnu.org; 30 Apr 2025 08:06:39 +0000 Received: from localhost ([127.0.0.1]:39291 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1uA2Sk-0007tP-SB for submit@debbugs.gnu.org; Wed, 30 Apr 2025 04:06:39 -0400 Received: from mout-p-201.mailbox.org ([80.241.56.171]:59144) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1uA2Sh-0007t6-HK for 78105@debbugs.gnu.org; Wed, 30 Apr 2025 04:06:36 -0400 Received: from smtp1.mailbox.org (smtp1.mailbox.org [10.196.197.1]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by mout-p-201.mailbox.org (Postfix) with ESMTPS id 4ZnVBW3Td7z9tVP for <78105@debbugs.gnu.org>; Wed, 30 Apr 2025 10:06:27 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=claesson.fi; s=MBO0001; t=1746000387; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: in-reply-to:in-reply-to:references:references; bh=YudN/IgZqQIlsjRVcd2Z/wf83mRvFZg65/JtTfz2QGw=; b=lqtX0g476DRulWoS7UktmpPeANCKHt1GU/n+lOB3jsZG4j6SrFQL7M/PqutIky86sE4MZ8 bdFKqTNhOPdXaRMFHci6ubFLhHiR4a7peMI0rkVPkMlJCSMXrlA01C69QArer0XtBhQEFN 0uKhdGpZB5txMpnye5XwJTDMd0Tvb2dlhqCHPWkYBFXCevttFYs7DRaqnVXYHiZJcHs6sL pDby/DrSCwfsATFTCBPTsz7AJBqCa7cSv25yCNV1nQ8/sZo1Lt4Vu/1lL7jM7D3/cfC8X9 RuxYfhMclbm34T2SK3agCw02XaS/Si2+daCY7Sy1FrhAKpWBGqLqPJcFRdpVhQ== From: =?utf-8?Q?Tor-bj=C3=B6rn_Claesson?= To: 78105@debbugs.gnu.org Subject: Re: [PATCH] gnu: r-posterior: update to 1.6.1. In-Reply-To: <87zffy5b28.fsf@claesson.fi> (=?utf-8?Q?=22Tor-bj=C3=B6rn?= Claesson"'s message of "Wed, 30 Apr 2025 11:05:19 +0300") References: <87zffy5b28.fsf@claesson.fi> Date: Wed, 30 Apr 2025 11:06:26 +0300 Message-ID: <87o6we5b0d.fsf@claesson.fi> MIME-Version: 1.0 Content-Type: text/x-patch Content-Disposition: attachment; filename=v2-0003-gnu-r-datawizard-Update-to-1.0.2.patch X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 78105 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) >From c9ff77c73a67504f511eaa8aabf6ec1e8fe21ebd Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tor-bj=C3=B6rn=20Claesson?= Date: Mon, 28 Apr 2025 11:10:10 +0300 Subject: [PATCH v2 3/4] gnu: r-datawizard: Update to 1.0.2. * gnu/packages/cran.scm (r-datawizard): Update to 1.0.2. Change-Id: Ia0430f526dadafb4fbcd9f79a53b02f227ef0e2d --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index cf9b5022a9..a9791a4278 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2229,14 +2229,14 @@ (define-public r-data-table (define-public r-datawizard (package (name "r-datawizard") - (version "1.0.0") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "datawizard" version)) (sha256 (base32 - "0477ldja6n4ar3hxrlxs5qwfggdbdfcsz7i1dgv3vjsxlvdjwgyd")))) + "1qwb1gw7rwjcdbjb721grm8qirnijzg8sipb922l85g85kf8gwvz")))) (properties `((upstream-name . "datawizard") (updater-ignored-native-inputs -- 2.49.0 From debbugs-submit-bounces@debbugs.gnu.org Wed Apr 30 04:07:03 2025 Received: (at 78105) by debbugs.gnu.org; 30 Apr 2025 08:07:03 +0000 Received: from localhost ([127.0.0.1]:39297 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1uA2T9-0007ug-E5 for submit@debbugs.gnu.org; Wed, 30 Apr 2025 04:07:03 -0400 Received: from mout-p-201.mailbox.org ([80.241.56.171]:59388) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1uA2T7-0007tr-OL for 78105@debbugs.gnu.org; Wed, 30 Apr 2025 04:07:02 -0400 Received: from smtp102.mailbox.org (smtp102.mailbox.org [10.196.197.102]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by mout-p-201.mailbox.org (Postfix) with ESMTPS id 4ZnVC20mJgz9tgc for <78105@debbugs.gnu.org>; Wed, 30 Apr 2025 10:06:54 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=claesson.fi; s=MBO0001; t=1746000414; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: in-reply-to:in-reply-to:references:references; bh=Gz74ru8VmjmXoqjM820xn/TVygFloA6Ym1xKJQJZa5Q=; b=OVQPgG2MAlHTVllCQoBFwjLwkBFrKPxMe+NyzmvWqFzNd/DFZzZLcdP5knzk9Sn07IIPrn UjOwcYzRw5WIfgugnJ2YkmkQbzaIXe2wiBac43bWXzHkk1NbO1m3dz7xFNHj5ChFKeOhXc gGrYIU63LyJDEWghRV8ncfb60YHWwTA1JsltMnGNwJK6TrwehwJkSI3dvZxugnvbyYIrDU ordqIizptDozxjAD2NePABeJIdFlSqwv5i8GNrOuAf7eRPpWjzTJ4y3Eb7uWQAiX1jg1fI II8LteTLV538Kl9+cfhazUk/0ZnCCovHt7NSo5nuhPpAcjTKzGxeiAeXiJvG8A== From: =?utf-8?Q?Tor-bj=C3=B6rn_Claesson?= To: 78105@debbugs.gnu.org Subject: Re: [PATCH] gnu: r-posterior: update to 1.6.1. In-Reply-To: <87zffy5b28.fsf@claesson.fi> (=?utf-8?Q?=22Tor-bj=C3=B6rn?= Claesson"'s message of "Wed, 30 Apr 2025 11:05:19 +0300") References: <87zffy5b28.fsf@claesson.fi> Date: Wed, 30 Apr 2025 11:06:53 +0300 Message-ID: <87jz725azm.fsf@claesson.fi> MIME-Version: 1.0 Content-Type: text/x-patch Content-Disposition: attachment; filename=v2-0004-gnu-r-cardx-Update-to-0.2.4.patch X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 78105 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) >From 9964c45cdf2e7b86827ac233fbd8b06760b0010a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tor-bj=C3=B6rn=20Claesson?= Date: Mon, 28 Apr 2025 11:59:38 +0300 Subject: [PATCH v2 4/4] gnu: r-cardx: Update to 0.2.4. * gnu/packages/cran.scm (r-cardx): Update to 0.2.4. Change-Id: Ifdda20fd5346389091829c70c07568b4e0ffb48e --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a9791a4278..85773061d5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1168,13 +1168,13 @@ (define-public r-cards (define-public r-cardx (package (name "r-cardx") - (version "0.2.2") + (version "0.2.4") (source (origin (method url-fetch) (uri (cran-uri "cardx" version)) (sha256 - (base32 "0jsqldsmpfgm9hvsrb833l119xsmkm8nqwdbsl7p1vhn2km0f5dv")))) + (base32 "1qbfa2kbxbc7lnrajj79dgz2nkjf4616ngha1yk9fl6f10qmsk24")))) (properties `((upstream-name . "cardx"))) (build-system r-build-system) (propagated-inputs (list r-cards -- 2.49.0 From debbugs-submit-bounces@debbugs.gnu.org Wed Apr 30 09:50:00 2025 Received: (at 78105) by debbugs.gnu.org; 30 Apr 2025 13:50:00 +0000 Received: from localhost ([127.0.0.1]:40922 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1uA7ow-0004Yv-BJ for submit@debbugs.gnu.org; Wed, 30 Apr 2025 09:50:00 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21151) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1uA7ot-0004Yf-3p for 78105@debbugs.gnu.org; Wed, 30 Apr 2025 09:49:51 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1746020976; cv=none; d=zohomail.com; s=zohoarc; b=SqwCDRE5roaH4+NNLFF3W2UQaLPEesxkjDL4+WgdryUbKXMTaO2dxGyz1Lbpinhnkf1h8AAZzJLUFRgNyU04V7wFx5rSD9JmQXDfY3PZhfXJy0zw+rM4QC1iagR3Trc3FdWFY4SqpykAuGOLomCjeDBcDFBCPn/Wh3kSz55VhbQ= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1746020976; h=Content-Type:Cc:Cc:Date:Date:From:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:Subject:To:To:Message-Id:Reply-To; bh=J/5xvdqNpDdLTNvt6/7EbGqTr9YU/9sTrGlaIRNk8YA=; b=hWUjQf0P5JkgG9im8vZvcSt/5y4aUmGxDkSapCoJVCQiVVkZ7y3JLOS8R11j6iMPemxNO5ttSU5Dr4PZo7mVfNqMxqM8z+HWG7kdUZAUpeiQDoSQO7uERXqh9p8WU9lRaciLfJQdMnCNcyF2/2Bj7vbUH8z5oC0JMDzxz4zrEZc= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1746020976; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Cc:Cc:Subject:Subject:In-Reply-To:References:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To; bh=J/5xvdqNpDdLTNvt6/7EbGqTr9YU/9sTrGlaIRNk8YA=; b=Zdh7FJUAfRp8FfAkz84ub8cmTrtD6pL0khpILWPi6GqbfHubJXCVyvTcRMUPscWk WDEbJpcVZrTp6YBVjWu+6sX4G5EQBQ8+bd3iiufdCa7IcsDhfnjMxENYY9YlZ6MfUiN 9fxPacvWw7YMo42bb4lYLzUMAE1gIpwZ5UL3NyBw= Received: by mx.zohomail.com with SMTPS id 1746020972568214.59987640656618; Wed, 30 Apr 2025 06:49:32 -0700 (PDT) From: Ricardo Wurmus To: tor-bjorn@claesson.fi Subject: Re: [PATCH] gnu: r-posterior: update to 1.6.1. In-Reply-To: <154431109.158835.1746000150653@office.mailbox.org> (tor-bjorn@claesson.fi's message of "Wed, 30 Apr 2025 11:02:30 +0300 (EEST)") References: <154431109.158835.1746000150653@office.mailbox.org> User-Agent: mu4e 1.12.9; emacs 29.4 Date: Wed, 30 Apr 2025 15:49:29 +0200 Message-ID: <877c31iwt2.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; format=flowed X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 78105 Cc: Andreas Enge , 78105@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi, > Updating r-delayedmatricstats, r-iranges, and multiple other > dependencies of r-delayedmatrixstats and r-iranges) to the > latest > versions available on bioconductor fixes this. I will report > separate > issues for those changes, and submit the patches there. Slowly > :-) I've got a full Bioconductor upgrade on the r-team branch, which I'm hoping to merge as soon as it has been fully built on ci.guix.gnu.org. Perhaps in the future we can coordinate these mass upgrades. Thank you for the effort you've put in your patches! -- Ricardo From debbugs-submit-bounces@debbugs.gnu.org Fri May 23 03:10:12 2025 Received: (at 78105-done) by debbugs.gnu.org; 23 May 2025 07:10:13 +0000 Received: from localhost ([127.0.0.1]:44560 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1uIMXk-0005Uh-EE for submit@debbugs.gnu.org; Fri, 23 May 2025 03:10:12 -0400 Received: from hera.aquilenet.fr ([185.233.100.1]:41286) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1uIMXg-0005Sn-Pv for 78105-done@debbugs.gnu.org; Fri, 23 May 2025 03:10:09 -0400 Received: from localhost (localhost [127.0.0.1]) by hera.aquilenet.fr (Postfix) with ESMTP id 847889A3; Fri, 23 May 2025 09:10:01 +0200 (CEST) Authentication-Results: hera.aquilenet.fr; none X-Virus-Scanned: Debian amavis at hera.aquilenet.fr Received: from hera.aquilenet.fr ([127.0.0.1]) by localhost (hera.aquilenet.fr [127.0.0.1]) (amavis, port 10024) with ESMTP id Yk0_vmfnAll1; Fri, 23 May 2025 09:10:01 +0200 (CEST) Received: from jurong (c42-154.i04-11.onvol.net [84.255.42.154]) by hera.aquilenet.fr (Postfix) with ESMTPSA id 04C45431; Fri, 23 May 2025 09:09:59 +0200 (CEST) Date: Fri, 23 May 2025 09:09:46 +0200 From: Andreas Enge To: tor-bjorn@claesson.fi Subject: Re: Fixed now Message-ID: References: <2031867522.272715.1747809473449@office.mailbox.org> MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline In-Reply-To: <2031867522.272715.1747809473449@office.mailbox.org> X-Rspamd-Server: hera X-Rspamd-Queue-Id: 847889A3 X-Spamd-Bar: ++++ X-Spamd-Result: default: False [4.39 / 15.00]; SPAM_FLAG(5.00)[]; REPLY(-4.00)[]; NEURAL_SPAM(2.99)[0.998]; MID_RHS_NOT_FQDN(0.50)[]; MIME_GOOD(-0.10)[text/plain]; RCPT_COUNT_TWO(0.00)[2]; FROM_EQ_ENVFROM(0.00)[]; MIME_TRACE(0.00)[0:+]; ARC_NA(0.00)[]; TO_DN_NONE(0.00)[]; RCVD_VIA_SMTP_AUTH(0.00)[]; RCVD_COUNT_TWO(0.00)[2]; FROM_HAS_DN(0.00)[]; TO_MATCH_ENVRCPT_ALL(0.00)[]; RCVD_TLS_ALL(0.00)[] X-Spam-Level: **** X-Rspamd-Action: no action X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 78105-done Cc: 78105-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Please distinguish debian and GNU :-) Our debbugs instance is @debbugs.gnu.org. Now closing for real. Andreas From debbugs-submit-bounces@debbugs.gnu.org Fri May 23 08:35:02 2025 Received: (at 78105) by debbugs.gnu.org; 23 May 2025 12:35:03 +0000 Received: from localhost ([127.0.0.1]:46641 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1uIRc6-0006jj-8I for submit@debbugs.gnu.org; Fri, 23 May 2025 08:35:02 -0400 Received: from mout-p-101.mailbox.org ([2001:67c:2050:0:465::101]:43964) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1uIRc2-0006iX-5e for 78105@debbugs.gnu.org; Fri, 23 May 2025 08:34:59 -0400 Received: from smtp102.mailbox.org (smtp102.mailbox.org [IPv6:2001:67c:2050:b231:465::102]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by mout-p-101.mailbox.org (Postfix) with ESMTPS id 4b3l3V6JQRz9sd7 for <78105@debbugs.gnu.org>; Fri, 23 May 2025 14:34:46 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=claesson.fi; s=MBO0001; t=1748003686; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding: in-reply-to:in-reply-to:references:references; bh=IVtIl4j/yThvUBYhbj41NIJkF2DRk+J/vpA68IRNVoQ=; b=IHw6kZRcwMXgTkdS/RfOdp7MJI5ThHHTuf12Un1IXqEMYICfmOQ4+kh2qlSasUBJt1wSLi mLnvgzq/RSVhGo2So0ODRR0INfDHO8/sQ6sKOB7bu7S9kwqX8tHFJ4SFTbLPMoeJ342eDD ZcRVDNqbTLfK449TyB50F27jBuvoxa2uTHHzFyxG97ouD+KD+1Ymb6pkzQ2hicyw1UIULF CVkWokY5XbvoL+MJ1RsZx8CyCJv1kqKRC50c/yp6iFErr8lLCtmYU/pYoVZut5SYR2X4Rn 85sq+fM4eXV5gNYjmJ2RKQ2gNS8T3iaI4+PyLrIfzRWDxp+PRTT8805V6iWRmw== Date: Fri, 23 May 2025 15:34:44 +0300 From: =?ISO-8859-1?Q?Tor-bj=F6rn_Claesson?= To: 78105@debbugs.gnu.org Subject: Re: bug#78105: closed (Re: Fixed now) In-Reply-To: References: <87ldrk236m.fsf@claesson.fi> Message-ID: MIME-Version: 1.0 Content-Type: multipart/alternative; boundary=----QU9BCFVMXYD45P7CGO04XE6BOZ7YR4 Content-Transfer-Encoding: 7bit X-Rspamd-Queue-Id: 4b3l3V6JQRz9sd7 X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 78105 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) ------QU9BCFVMXYD45P7CGO04XE6BOZ7YR4 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Ah! Thanks :-) Den 23 maj 2025 10=2E11=2E02 EEST, help-debbugs@gnu=2Eorg skrev: >Your bug report > >#78105: r-posterior: Update to 1=2E6=2E1=2E > >which was filed against the guix-patches package, has been closed=2E > >The explanation is attached below, along with your original report=2E >If you require more details, please reply to 78105@debbugs=2Egnu=2Eorg=2E > >--=20 >78105: https://debbugs=2Egnu=2Eorg/cgi/bugreport=2Ecgi?bug=3D78105 >GNU Bug Tracking System >Contact help-debbugs@gnu=2Eorg with problems ------QU9BCFVMXYD45P7CGO04XE6BOZ7YR4 Content-Type: text/html; charset=utf-8 Content-Transfer-Encoding: quoted-printable
Ah!

Thanks :-)

<= br>
Den 23 maj 2025 10=2E11=2E0= 2 EEST, help-debbugs@gnu=2Eorg skrev:
Your bug report

#78105: r-p=
osterior: Update to 1=2E6=2E1=2E

which was filed against the guix-pa=
tches package, has been closed=2E

The explanation is attached below,=
 along with your original report=2E
If you require more details, please =
reply to 78105@debbugs=2Egnu=2Eorg=2E

------QU9BCFVMXYD45P7CGO04XE6BOZ7YR4--