GNU bug report logs - #77575
[PATCH python-team 00/21] More patches

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Message #38 received at 77575 <at> debbugs.gnu.org (full text, mbox):

From: Nicolas Graves <ngraves <at> ngraves.fr>
To: 77575 <at> debbugs.gnu.org
Cc: Nicolas Graves <ngraves <at> ngraves.fr>
Subject: [PATCH 11/21] gnu: cnvkit: Update to 0.9.12.
Date: Sun,  6 Apr 2025 14:37:13 +0200

* gnu/packages/bioinformatics.scm (cnvkit): Update to 0.9.12.
[build-system]: Switch to pyproject.
[native-inputs]: Add python-setuptools, python-wheel.
---
 gnu/packages/bioinformatics.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5c5106b21a..cbb7aa1b11 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -21156,7 +21156,7 @@ (define-public nanopolish
 (define-public cnvkit
   (package
     (name "cnvkit")
-    (version "0.9.10")
+    (version "0.9.12")
     (source
      (origin
        (method git-fetch)
@@ -21165,7 +21165,7 @@ (define-public cnvkit
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0r303pqjg70zpxa564bavbfj99c6di0dafgqqwx2vh4vfsiif94q"))))
+        (base32 "090yh17symcahddx399kcx0mcw4gdrcc2jil3p8lb92r8c8kglb5"))))
     (build-system pyproject-build-system)
     (propagated-inputs
      (list python-biopython
@@ -21182,7 +21182,7 @@ (define-public cnvkit
            ;; R packages
            r-dnacopy))
     (inputs (list r-minimal)) ;for tests
-    (native-inputs (list python-setuptools python-wheel))
+    (native-inputs (list python-pytest python-setuptools python-wheel))
     (home-page "https://cnvkit.readthedocs.org/")
     (synopsis "Copy number variant detection from targeted DNA sequencing")
     (description
-- 
2.49.0

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