GNU bug report logs - #77400
[PATCH python-team 00/26] Some further updates

Previous Next

Full log

Message #50 received at 77400 <at> debbugs.gnu.org (full text, mbox):

From: Nicolas Graves <ngraves <at> ngraves.fr>
To: 77400 <at> debbugs.gnu.org
Cc: Nicolas Graves <ngraves <at> ngraves.fr>
Subject: [PATCH 18/26] gnu: umi-tools: Update to 1.1.6.
Date: Mon, 31 Mar 2025 08:18:46 +0200

* gnu/packages/bioinformatics.scm (umi-tools): Update to 1.1.6.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[inputs]: Add python-pybktree, python-scipy.
[native-inputs]: Add python-setuptools, python-wheel.
---
 gnu/packages/bioinformatics.scm | 18 +++++++++++-------
 1 file changed, 11 insertions(+), 7 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1215e67117..91ea4a5b7a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -21424,24 +21424,28 @@ (define-public checkm
 (define-public umi-tools
   (package
     (name "umi-tools")
-    (version "1.0.0")
+    (version "1.1.6")
     (source
      (origin
-       (method url-fetch)
-       (uri (pypi-uri "umi_tools" version))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/CGATOxford/UMI-tools")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
-        (base32
-         "08y3vz1vcx09whmbsn722lcs6jl9wyrh9i4p3k8j4cb1i32bij4a"))))
-    (build-system python-build-system)
+        (base32 "1liykfj4msvcgk8an5qq802jcxwlijqxrvijipqj1pwpxqzl9qnh"))))
+    (build-system pyproject-build-system)
     (inputs
      (list python-pandas
            python-future
            python-scipy
            python-matplotlib
            python-regex
+           python-pybktree
+           python-scipy
            python-pysam))
     (native-inputs
-     (list python-cython))
+     (list python-setuptools python-wheel))
     (home-page "https://github.com/CGATOxford/UMI-tools")
     (synopsis "Tools for analyzing unique modular identifiers")
     (description "This package provides tools for dealing with @dfn{Unique
-- 
2.49.0

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.