From unknown Tue Jun 17 20:14:53 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#77385 <77385@debbugs.gnu.org> To: bug#77385 <77385@debbugs.gnu.org> Subject: Status: [PATCH] gnu: hdf-java: Update to 1.14.3. Reply-To: bug#77385 <77385@debbugs.gnu.org> Date: Wed, 18 Jun 2025 03:14:53 +0000 retitle 77385 [PATCH] gnu: hdf-java: Update to 1.14.3. reassign 77385 guix-patches submitter 77385 David Elsing severity 77385 normal tag 77385 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 30 10:13:32 2025 Received: (at submit) by debbugs.gnu.org; 30 Mar 2025 14:13:32 +0000 Received: from localhost ([127.0.0.1]:37640 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tytPn-0002jg-JU for submit@debbugs.gnu.org; Sun, 30 Mar 2025 10:13:32 -0400 Received: from lists.gnu.org ([2001:470:142::17]:50230) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tytPf-0002jI-TU for submit@debbugs.gnu.org; Sun, 30 Mar 2025 10:13:28 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tytPV-0001Uy-E8 for guix-patches@gnu.org; Sun, 30 Mar 2025 10:13:14 -0400 Received: from mout01.posteo.de ([185.67.36.65]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tytPS-0004Sf-Vl for guix-patches@gnu.org; Sun, 30 Mar 2025 10:13:13 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id D538C240027 for ; Sun, 30 Mar 2025 16:13:05 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1743343985; bh=ZFCf4FxJDS3a4DCwGn6sYwuZf24jiVGAIOfXPH9079Q=; h=From:To:Cc:Subject:Date:Message-ID:MIME-Version: Content-Transfer-Encoding:From; b=aydmZhR8JyGnrf2L30mWE5dXdoK6wB3mtSzEN5HlYKC7XYN7Uz1LSNMXgm0A4xOqU bkitHPHGrpR+QTI2SzyZifrfuAf1KbOz6yRGVmnrgnFNC/9MenCMzcanE3CMULV+I4 R49caBE/gCLG6ZeCJULINeS8EYuK/VVpLkPUJ7OPwOwP8bWAQg0Jf0iwx08rTsTsXH KPW4pQDo+Jmp1tlAbNcGygG+8P+xExKs2knhLOAbuot24c60i5iUHctawScVJbzC54 8j3qULHS8Py2smkZjNwUu3p+Ksl6xRZQbK2vzjoZqHnHl84+eIw56XrT7cgfE0bNvf 4CZkQnDZQPuPA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4ZQbns2Y7Tz9rxB; Sun, 30 Mar 2025 16:13:05 +0200 (CEST) From: David Elsing To: guix-patches@gnu.org Subject: [PATCH] gnu: hdf-java: Update to 1.14.3. Date: Sun, 30 Mar 2025 14:12:49 +0000 Message-ID: <20250330141257.18074-1-david.elsing@posteo.net> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Received-SPF: pass client-ip=185.67.36.65; envelope-from=david.elsing@posteo.net; helo=mout01.posteo.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, RCVD_IN_VALIDITY_CERTIFIED_BLOCKED=0.001, RCVD_IN_VALIDITY_RPBL_BLOCKED=0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 1.0 (+) X-Debbugs-Envelope-To: submit Cc: David Elsing X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.0 (/) * gnu/packages/maths.scm (hdf-java): Update to 1.14.3. [arguments]: Adjust dependency versions in 'unbundle phase. [inputs]: Replace hdf5 with hdf5-1.14. [home-page]: Update. [license]: Update URL. Change-Id: I43db316c3a83f5ddac14b0c670430811dcac6bdc --- gnu/packages/maths.scm | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 3de5b7b8ae..d47c3425af 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1880,7 +1880,7 @@ (define-public hdf5 (define-public hdf-java (package (name "hdf-java") - (version "1.10.9") + (version "1.14.3") (source (origin (method git-fetch) @@ -1892,7 +1892,7 @@ (define-public hdf-java version))))) (file-name (git-file-name name version)) (sha256 - (base32 "1sjdcnafvzsy99vqhybkps8rnwmxb6fsvmkw89wb2mrrp4vi5z9v")) + (base32 "0lw9f62zxyjiv7vx9nvnashjj39i44j8d626i7b788zkxw58csvs")) (modules '((guix build utils))) (snippet ; Make sure we don't use the bundled sources and binaries. '(for-each delete-file @@ -1921,9 +1921,9 @@ (define-public hdf-java inputs "/lib/m2/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3.jar"))) (substitute* (append (find-files "java" "Makefile.am") (find-files "java" "Makefile.in")) - (("\\$\\(top_srcdir\\)/java/lib/ext/slf4j-simple-1.7.33.jar") + (("\\$\\(top_srcdir\\)/java/lib/ext/slf4j-simple-2.0.6.jar") simple) - (("\\$\\(top_srcdir\\)/java/lib/slf4j-api-1.7.33.jar") + (("\\$\\(top_srcdir\\)/java/lib/slf4j-api-2.0.6.jar") api) (("\\$\\(top_srcdir\\)/java/lib/junit.jar") junit) @@ -1944,9 +1944,9 @@ (define-public hdf-java junit) (("\"\\$BLDLIBDIR\"/hamcrest-core.jar") hamcrest) - (("\"\\$BLDLIBDIR\"/slf4j-api-1.7.33.jar") + (("\"\\$BLDLIBDIR\"/slf4j-api-2.0.6.jar") api) - (("\"\\$BLDLIBDIR\"/slf4j-simple-1.7.33.jar") + (("\"\\$BLDLIBDIR\"/slf4j-simple-2.0.6.jar") simple) (("/usr/bin/test") (search-input-file inputs "/bin/test")) @@ -1963,11 +1963,11 @@ (define-public hdf-java java-slf4j-simple)) (inputs (list hdf4 - hdf5 + hdf5-1.14 java-slf4j-api libjpeg-turbo zlib)) - (home-page "https://support.hdfgroup.org/products/java") + (home-page "https://www.hdfgroup.org") (synopsis "Java interface for the HDF4 and HDF5 libraries") (description "Java HDF Interface (JHI) and Java HDF5 Interface (JHI5) use the Java Native Interface to wrap the HDF4 and HDF5 libraries, which are @@ -1976,7 +1976,7 @@ (define-public hdf-java ;; BSD-style license: (license (license:x11-style "https://support.hdfgroup.org/ftp/HDF5/hdf-java\ -/current/src/unpacked/COPYING")))) +/current/src/unpacked/COPYING.html")))) (define-public hdf-eos2 (package -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Mon Mar 31 04:29:23 2025 Received: (at 77385-done) by debbugs.gnu.org; 31 Mar 2025 08:29:23 +0000 Received: from localhost ([127.0.0.1]:39672 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tzAWI-0000V4-JU for submit@debbugs.gnu.org; Mon, 31 Mar 2025 04:29:23 -0400 Received: from hera.aquilenet.fr ([185.233.100.1]:59764) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tzAWE-0000TB-MX for 77385-done@debbugs.gnu.org; Mon, 31 Mar 2025 04:29:19 -0400 Received: from localhost (localhost [127.0.0.1]) by hera.aquilenet.fr (Postfix) with ESMTP id A87E91E9; Mon, 31 Mar 2025 10:29:10 +0200 (CEST) Authentication-Results: hera.aquilenet.fr; none X-Virus-Scanned: Debian amavis at hera.aquilenet.fr Received: from hera.aquilenet.fr ([127.0.0.1]) by localhost (hera.aquilenet.fr [127.0.0.1]) (amavis, port 10024) with ESMTP id aAha6n79Cmdf; Mon, 31 Mar 2025 10:29:10 +0200 (CEST) Received: from jurong (176-179-191-150.abo.bbox.fr [176.179.191.150]) by hera.aquilenet.fr (Postfix) with ESMTPSA id 87778111; Mon, 31 Mar 2025 10:29:08 +0200 (CEST) Date: Mon, 31 Mar 2025 10:29:06 +0200 From: Andreas Enge To: David Elsing Subject: Re: [PATCH] gnu: hdf-java: Update to 1.14.3. Message-ID: References: <20250330141257.18074-1-david.elsing@posteo.net> MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline In-Reply-To: <20250330141257.18074-1-david.elsing@posteo.net> X-Rspamd-Queue-Id: A87E91E9 X-Spamd-Result: default: False [5.52 / 15.00]; SPAM_FLAG(5.00)[]; NEURAL_SPAM(3.00)[1.000]; BAYES_HAM(-2.88)[99.48%]; MID_RHS_NOT_FQDN(0.50)[]; MIME_GOOD(-0.10)[text/plain]; MIME_TRACE(0.00)[0:+]; FROM_HAS_DN(0.00)[]; RCVD_COUNT_TWO(0.00)[2]; FROM_EQ_ENVFROM(0.00)[]; RCPT_COUNT_TWO(0.00)[2]; RCVD_TLS_ALL(0.00)[]; RCVD_VIA_SMTP_AUTH(0.00)[]; TO_DN_SOME(0.00)[]; TO_MATCH_ENVRCPT_ALL(0.00)[]; ARC_NA(0.00)[] X-Spam-Level: ***** X-Rspamd-Action: greylist X-Spamd-Bar: +++++ X-Rspamd-Server: hera X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 77385-done Cc: 77385-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Excellent, thanks a lot! I made the error of not realising that (find-files "java" "Makefile.am") traversed subdirectories, where the substitutes occur. I am going to push this as part of https://issues.guix.gnu.org/77287 and close this issue. Andreas From unknown Tue Jun 17 20:14:53 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Mon, 28 Apr 2025 11:24:17 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator