Package: guix-patches;
Reported by: Andreas Enge <andreas <at> enge.fr>
Date: Thu, 27 Mar 2025 19:48:02 UTC
Severity: normal
Tags: patch
Done: Andreas Enge <andreas <at> enge.fr>
Bug is archived. No further changes may be made.
Message #11 received at 77321 <at> debbugs.gnu.org (full text, mbox):
From: Andreas Enge <andreas <at> enge.fr> To: 77321 <at> debbugs.gnu.org Cc: rekado <at> elephly.net, Andreas Enge <andreas <at> enge.fr>, sharlatanus <at> gmail.com, bavier <at> posteo.net Subject: [PATCH 2/2] gnu: Remove atlas. Date: Thu, 27 Mar 2025 20:49:44 +0100
* gnu/packages/maths.scm (atlas): Delete variable.
The package does not build anymore. Its last release dates from 2016.
After the removal of shogun there are no other dependent packages.
Change-Id: Ibe988d33451b63ef7680b6c0a19cff6430a42a68
---
gnu/packages/maths.scm | 129 -----------------------------------------
1 file changed, 129 deletions(-)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index f0d0bb8f97..49e4ee4171 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -6991,135 +6991,6 @@ (define-public suitesparse
;; GPUQREngine, RBio, SuiteSparse_GPURuntime, SuiteSparseQR, UMFPACK
(license (list license:gpl2+ license:lgpl2.1+))))
-(define-public atlas
- (package
- (name "atlas")
- (version "3.10.3")
- (source (origin
- (method url-fetch)
- (uri (string-append "mirror://sourceforge/math-atlas/Stable/"
- version "/atlas" version ".tar.bz2"))
- (patches (search-patches "atlas-gfortran-compat.patch"))
- (sha256
- (base32
- "1dyjlq3fiparvm8ypwk6rsmjzmnwk81l88gkishphpvc79ryp216"))))
- (build-system gnu-build-system)
- (home-page "https://math-atlas.sourceforge.net/")
- (inputs `(("gfortran" ,gfortran)
- ("lapack-tar" ,(package-source lapack))))
- (outputs '("out" "doc"))
- ;; For the moment we drop support for MIPS at it fails to compile. See
- ;; https://lists.gnu.org/archive/html/guix-devel/2014-11/msg00516.html
- (supported-systems (delete "mips64el-linux" %supported-systems))
- (arguments
- `(#:parallel-build? #f
- #:parallel-tests? #f
-
- ;; ATLAS tunes itself for the machine it is built on, as explained at
- ;; <http://lists.gnu.org/archive/html/guix-devel/2014-10/msg00305.html>.
- ;; For this reason, we want users to build it locally instead of using
- ;; substitutes.
- #:substitutable? #f
-
- #:modules ((srfi srfi-26)
- (guix build gnu-build-system)
- (guix build utils))
- #:configure-flags
- `(;; Generate position independent code suitable for dynamic libraries
- ;; and use WALL timer to get more accurate timing.
- "-Fa" "alg" "-fPIC" "-D" "c" "-DWALL"
- ;; Set word width.
- "-b"
- ,,(if (string-match "64" (%current-system))
- "64"
- "32")
- ;; Disable parallel build as it gives errors: atlas_pthread.h is
- ;; needed to compile C files before it is generated.
- "-Ss" "pmake" "make -j 1"
- ;; Probe is failing for MIPS. We therefore define the system
- ;; architecture explicitly by setting (-A) MACHINETYPE = 49
- ;; 'MIPSR1xK' and (-V) ISA = 1 'none'.
- ,,@(if (string-prefix? "mips" (%current-system))
- (list "-A" "49" "-V" "1")
- (list))
- ;; Generate shared libraries.
- "--shared"
- ;; Build a full LAPACK library.
- ,(string-append "--with-netlib-lapack-tarfile="
- (assoc-ref %build-inputs "lapack-tar")))
- #:phases
- (modify-phases %standard-phases
- (add-after 'install 'install-doc
- (lambda* (#:key outputs inputs #:allow-other-keys)
- (let ((doc (string-append (assoc-ref outputs "doc")
- "/share/doc/atlas")))
- (mkdir-p doc)
- (for-each (cut install-file <> doc)
- (find-files "../ATLAS/doc" ".*"))
- #t)))
- (add-after 'check 'check-pt
- (lambda _ (invoke "make" "ptcheck")))
- ;; Fix files required to run configure.
- (add-before 'configure 'fix-/bin/sh
- (lambda _
- ;; Use `sh', not `/bin/sh'.
- (substitute* (find-files "." "Makefile|configure|SpewMakeInc\\.c")
- (("/bin/sh")
- "sh"))
- #t))
- ;; Fix /bin/sh in generated make files.
- (add-after 'configure 'fix-/bin/sh-in-generated-files
- (lambda _
- (substitute* (find-files "." "^[Mm]ake\\.inc.*")
- (("/bin/sh")
- "sh"))
- #t))
- ;; ATLAS configure program does not accepts the default flags
- ;; passed by the 'gnu-build-system'.
- (replace 'configure
- (lambda* (#:key native-inputs inputs outputs
- (configure-flags '())
- #:allow-other-keys #:rest args)
- (let* ((prefix (assoc-ref outputs "out"))
- (bash (or (and=> (assoc-ref
- (or native-inputs inputs) "bash")
- (cut string-append <> "/bin/bash"))
- "/bin/sh"))
- (flags `(,(string-append "--prefix=" prefix)
- ,@configure-flags))
- (abs-srcdir (getcwd))
- (srcdir (string-append "../" (basename abs-srcdir))))
- (format #t "source directory: ~s (relative from build: ~s)~%"
- abs-srcdir srcdir)
- (mkdir "../build")
- (chdir "../build")
- (format #t "build directory: ~s~%" (getcwd))
- (format #t "configure flags: ~s~%" flags)
- (apply invoke bash
- (string-append srcdir "/configure")
- flags)))))))
- (synopsis "Automatically Tuned Linear Algebra Software")
- (description
- "ATLAS is an automatically tuned linear algebra software library
-providing C and Fortran77 interfaces to a portably efficient BLAS
-implementation, as well as a few routines from LAPACK.
-
-Optimization occurs at build time. For this reason, the library is built on
-the machine where it is installed, without resorting to pre-built substitutes.
-
-Before building the library, CPU throttling should be disabled. This can be
-done in the BIOS, or, on GNU/Linux, with the following command:
-
-@example
-# cpupower --governor performance
-@end example
-
-Failure to do so will result in a library with poor performance.")
- ;; The test suite is notoriously lengthy and routinely exceeds the default
- ;; timeout of 21600 seconds on the not unbeefy berlin build nodes.
- (properties '((timeout . 86400))) ; 1 day
- (license license:bsd-3)))
-
(define-public cglm
(package
(name "cglm")
--
2.49.0
GNU bug tracking system
Copyright (C) 1999 Darren O. Benham,
1997,2003 nCipher Corporation Ltd,
1994-97 Ian Jackson.