From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 07 13:50:53 2025 Received: (at submit) by debbugs.gnu.org; 7 Mar 2025 18:50:53 +0000 Received: from localhost ([127.0.0.1]:50323 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tqcmb-0001st-6L for submit@debbugs.gnu.org; Fri, 07 Mar 2025 13:50:53 -0500 Received: from lists.gnu.org ([2001:470:142::17]:48396) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tqcmZ-0001sb-1b for submit@debbugs.gnu.org; Fri, 07 Mar 2025 13:50:51 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tqcmM-0005vW-Pl for guix-patches@gnu.org; Fri, 07 Mar 2025 13:50:39 -0500 Received: from 9.mo584.mail-out.ovh.net ([46.105.40.176]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tqcmI-0006bK-4Z for guix-patches@gnu.org; Fri, 07 Mar 2025 13:50:38 -0500 Received: from director5.ghost.mail-out.ovh.net (unknown [10.109.140.131]) by mo584.mail-out.ovh.net (Postfix) with ESMTP id 4Z8b2Z1L98z1SJF for ; Fri, 7 Mar 2025 18:50:30 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-x2q2r (unknown [10.110.164.164]) by director5.ghost.mail-out.ovh.net (Postfix) with ESMTPS id DE1391FE64; Fri, 7 Mar 2025 18:50:29 +0000 (UTC) Received: from ngraves.fr ([37.59.142.100]) by ghost-submission-5b5ff79f4f-x2q2r with ESMTPSA id lZ+CKPU/y2eZOCAACxjVtQ (envelope-from ); Fri, 07 Mar 2025 18:50:29 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-100R00391e20a88-0e72-446c-b122-ab8d6d6999ec, 93CD87FFD4632086FD827B47E208BFE70AFEC0F0) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: guix-patches@gnu.org Subject: [PATCH python-team 00/15] Some further python fixes Date: Fri, 7 Mar 2025 19:48:39 +0100 Message-ID: <20250307185027.11928-1-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 4608871269549531874 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduuddugeefucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffoggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepkeffgeetfffgffejgeejvdffgfdtvdeuueetgfefuedvjeegvdegjeejveeuueevnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutddtnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopehguhhigidqphgrthgthhgvshesghhnuhdrohhrghdpoffvtefjohhsthepmhhoheekgegmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=Ql4tJCzfBXfwRxbefCsCORN0yTqYRsJViqpehJH+/Q8=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741373430; v=1; b=T7bL7mRjuQ4+Z3UyuwEPKRBsxOj2nC5YbGaK1MRCGVNLy7uu9K5v+dAmCG9AWAe2YEu4QGX+ aEPgHT9QQikLXAika/qnULviRciDaAftrWoOzK/HS/N7rAD+FO+dm65nnAp1kRxFtMq4j/sFMrX gy8Aq+ZkgMicK/lBpghB8nzSEIb5heau4RW0CIcSzToKRuae3ByXnDcUwfhn8svf0IY27PLRyb6 qXhGiwTsFZr13ccQ6R0ix27mcWNrt7gpgE4OoZzXwpfj8ttCNUKBciiQRBAyqaEXqflYGbifHe5 0KdYZ/HoSI3hxA46N0JIzn34WJqTEAyVg/5towKvmDP0Q== Received-SPF: pass client-ip=46.105.40.176; envelope-from=ngraves@ngraves.fr; helo=9.mo584.mail-out.ovh.net X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_NONE=-0.0001, RCVD_IN_MSPIKE_H3=0.001, RCVD_IN_MSPIKE_WL=0.001, RCVD_IN_VALIDITY_RPBL_BLOCKED=0.001, RCVD_IN_VALIDITY_SAFE_BLOCKED=0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 1.0 (+) X-Debbugs-Envelope-To: submit Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.0 (/) We might want to check out with Chris if nothing is broken with an update of patchwork. Nicolas Graves (12): gnu: gunicorn: Migrate 'check phase to pyproject-build-system. gnu: python-unyt: Avoid deprecation failure in tests. gnu: python-carbon: Update to 1.1.10. gnu: Add python-rrdtool. gnu: python-h2: Fix test-flags. gnu: graphite-web: Update to 1.1.10-2.49c28e2. gnu: python-nptyping: Ignore failing test. gnu: python-cfn-lint: Update to 1.28.0. gnu: patchwork: Update to 3.2.1. gnu: Remove python-django-3.2. gnu: python-uqbar: Update to 7.0.0. gnu: Remove python-sphinx-autodoc-typehints-5. Nicolas Graves via Guix-patches via (3): gnu: python-sphinx-panels: Update input to python-sphinx-5. gnu: python-numpy-documentation: Update python-sphinx native-input. gnu: Remove python-sphinx-4. gnu/packages/django.scm | 20 +---- gnu/packages/graphviz.scm | 11 +-- gnu/packages/monitoring.scm | 128 ++++++++++++++++++++++---------- gnu/packages/patchutils.scm | 6 +- gnu/packages/python-check.scm | 2 + gnu/packages/python-science.scm | 3 + gnu/packages/python-web.scm | 26 +++---- gnu/packages/python-xyz.scm | 14 +++- gnu/packages/sphinx.scm | 36 +++------ 9 files changed, 132 insertions(+), 114 deletions(-) -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 07 14:15:33 2025 Received: (at 76835) by debbugs.gnu.org; 7 Mar 2025 19:15:34 +0000 Received: from localhost ([127.0.0.1]:50372 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tqdAT-000301-94 for submit@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:33 -0500 Received: from 11.mo561.mail-out.ovh.net ([87.98.184.158]:34489) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tqdAQ-0002zT-8L for 76835@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:31 -0500 Received: from director10.ghost.mail-out.ovh.net (unknown [10.109.176.101]) by mo561.mail-out.ovh.net (Postfix) with ESMTP id 4Z8bbN2DXmz1V3h for <76835@debbugs.gnu.org>; Fri, 7 Mar 2025 19:15:28 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-rrkpn (unknown [10.111.174.252]) by director10.ghost.mail-out.ovh.net (Postfix) with ESMTPS id C870F1FD97; Fri, 7 Mar 2025 19:15:27 +0000 (UTC) Received: from ngraves.fr ([37.59.142.100]) by ghost-submission-5b5ff79f4f-rrkpn with ESMTPSA id 7TOQEc9Fy2fq7gQAUF0UpA (envelope-from ); Fri, 07 Mar 2025 19:15:27 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-100R00311f5df9d-85a6-44da-ac48-bd049ab22013, 93CD87FFD4632086FD827B47E208BFE70AFEC0F0) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH 03/15] gnu: python-carbon: Update to 1.1.10. Date: Fri, 7 Mar 2025 20:15:01 +0100 Message-ID: <20250307191522.22228-3-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250307191522.22228-1-ngraves@ngraves.fr> References: <20250307191522.22228-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5030520785864876770 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduuddugeejucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepudeiffevteeuffeflefhvddthfelgfevheffueelvdelgffgvdelkeehvdekhfeinecuffhomhgrihhnpehgrhgrphhhihhtvggrphhprdhorhhgnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutddtnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehiedumgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=fwelCLAyKsczFjE5oS8ki4xUgXL5jLub/1c/mR6WfTg=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741374928; v=1; b=K+V+YAr5bl8AaB3wgnkKd594nkF9KLp8uI/a/Ei+jpuTmLhWDNkmCd91w27Mb9fgcSGNv6OQ 9u0R84+JI9TCVtqPrDaqcMvo/w5DzsR0CaXbefj0gK2eoRhjYOwK0EumG5CZMANEOekZ+PAy0oo zReQFAUwwhe/mBb+sWwcEwwc5d1bYAlgqM/b4aMscZDHBVbU7B4l/0JNAB3sMJJmWRmph0QymX1 6NTUfJDTTh8onsOItbnESU5AqjYi4kyBDVBgnZ1VaiLDLfY/3UV4O6b4Ux3CmgBD+Y5GaUFi7X/ knGxtURGX7PRrBn63Jb0xXmQiFxqbqnP7x2ZzVkfsCVPg== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/monitoring.scm (python-carbon): Update to 1.1.10. --- gnu/packages/monitoring.scm | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm index 9813b5ca67..01b554d9aa 100644 --- a/gnu/packages/monitoring.scm +++ b/gnu/packages/monitoring.scm @@ -433,23 +433,24 @@ (define-public python-whisper (define-public python-carbon (package (name "python-carbon") - (version "1.1.8") + (version "1.1.10") (source (origin (method url-fetch) (uri (pypi-uri "carbon" version)) (sha256 (base32 - "1wb91fipk1niciffq5xwqbh8g7rl7ghdam4m97cjbig12i5qr4cm")))) - (build-system python-build-system) + "0p6yjxif5ly5wkllnaw41w2zy9y0nffgfk91v861fn6c26lmnfy1")))) + (build-system pyproject-build-system) (arguments `(#:phases (modify-phases %standard-phases ;; Don't install to /opt (add-after 'unpack 'do-not-install-to-/opt (lambda _ (setenv "GRAPHITE_NO_PREFIX" "1") #t))))) + (native-inputs (list python-setuptools python-wheel)) (propagated-inputs - (list python-cachetools python-txamqp python-urllib3 python-whisper)) + (list python-cachetools python-twisted python-txamqp python-urllib3)) (home-page "https://graphiteapp.org/") (synopsis "Backend data caching and persistence daemon for Graphite") (description "Carbon is a backend data caching and persistence daemon for -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 07 14:15:34 2025 Received: (at 76835) by debbugs.gnu.org; 7 Mar 2025 19:15:34 +0000 Received: from localhost ([127.0.0.1]:50374 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tqdAT-000308-Su for submit@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:34 -0500 Received: from 8.mo575.mail-out.ovh.net ([46.105.74.219]:36191) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tqdAO-0002zQ-Sn for 76835@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:31 -0500 Received: from director5.ghost.mail-out.ovh.net (unknown [10.108.25.4]) by mo575.mail-out.ovh.net (Postfix) with ESMTP id 4Z8bbL6vw2z1nq7 for <76835@debbugs.gnu.org>; Fri, 7 Mar 2025 19:15:26 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-pzhbq (unknown [10.110.178.62]) by director5.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 94F161FD9C; Fri, 7 Mar 2025 19:15:26 +0000 (UTC) Received: from ngraves.fr ([37.59.142.100]) by ghost-submission-5b5ff79f4f-pzhbq with ESMTPSA id E7G9Gc5Fy2cb2BEAyzgd5g (envelope-from ); Fri, 07 Mar 2025 19:15:26 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-100R00305311157-88d2-4710-ae55-a2268ad4846b, 93CD87FFD4632086FD827B47E208BFE70AFEC0F0) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH 02/15] gnu: python-unyt: Avoid deprecation failure in tests. Date: Fri, 7 Mar 2025 20:15:00 +0100 Message-ID: <20250307191522.22228-2-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250307191522.22228-1-ngraves@ngraves.fr> References: <20250307191522.22228-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5029957834328433378 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduuddugeejucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutddtnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehjeehmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=N3LbNrVhtuTVcQGjzeOVOHdvVoYUMrG8/cLSeHFhEQs=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741374927; v=1; b=rcbfEWsnmCgIw1QkTALp5CdWwFRzhDeW7A/Z0OTEytUaVjNURQipfjTi4FfpkoJFbNfAAiFc aB2OiDS6x88/PtbysYyrlKkJscCza6bj5H+mQsXqOt5IgJjm4H0qJSbSlizBW+55JvOj0zYlGlx KxITPZHclsTMdlteZ6Oz2GVnAHAR+kiVfVxwGipHIcdJ1jtv5lFjVhHqZ3dIwuj+U2ljsALyakC +gO+rAw/kufqKYjNNcFat82Md1hQHI7b1vOYse8gTOL4TOb9aqAF9oiLaqxk4nuB0QO1V69UPJE 7x71MAwOEFh5X6B8YWJoubQIATYxp4ThyJtNd8Ccr4fLg== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-science.scm (python-unyt)[arguments] {test-flags}: Ignore failing test. --- gnu/packages/python-science.scm | 3 +++ 1 file changed, 3 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 2fa57f0ab5..ca259356cf 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -2526,6 +2526,9 @@ (define-public python-unyt (sha256 (base32 "0jrq2vhan2h280h6cw1sm5hys2nzmf19w4py64k3nrkc320z9mni")))) (build-system pyproject-build-system) + (arguments + ;; This is a Numpy DeprecationWarning, remove it on next update. + (list #:test-flags ''("-k" "not test_h5_io"))) ;; Pint is optional, but we do not propagate it due to its size. (native-inputs (list python-pint -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 07 14:15:40 2025 Received: (at 76835) by debbugs.gnu.org; 7 Mar 2025 19:15:40 +0000 Received: from localhost ([127.0.0.1]:50388 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tqdAZ-00030z-Fj for submit@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:39 -0500 Received: from 9.mo576.mail-out.ovh.net ([46.105.56.78]:45993) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tqdAO-0002zP-RT for 76835@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:32 -0500 Received: from director11.ghost.mail-out.ovh.net (unknown [10.109.148.29]) by mo576.mail-out.ovh.net (Postfix) with ESMTP id 4Z8bbL2R7Dz23b8 for <76835@debbugs.gnu.org>; Fri, 7 Mar 2025 19:15:26 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-bzkkz (unknown [10.110.113.153]) by director11.ghost.mail-out.ovh.net (Postfix) with ESMTPS id DF3701FDF0; Fri, 7 Mar 2025 19:15:25 +0000 (UTC) Received: from ngraves.fr ([37.59.142.107]) by ghost-submission-5b5ff79f4f-bzkkz with ESMTPSA id ZmOLJ81Fy2fB0gUAdB0gMw (envelope-from ); Fri, 07 Mar 2025 19:15:25 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-107S001fc6ec1eb-7b1c-4277-9d50-4795b1f63933, 93CD87FFD4632086FD827B47E208BFE70AFEC0F0) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH 01/15] gnu: gunicorn: Migrate 'check phase to pyproject-build-system. Date: Fri, 7 Mar 2025 20:14:59 +0100 Message-ID: <20250307191522.22228-1-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5029957834463175394 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduuddugeekucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffoggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepkeffgeetfffgffejgeejvdffgfdtvdeuueetgfefuedvjeegvdegjeejveeuueevnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutdejnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehjeeimgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=rBtZRVTmBQn0k7mxS0KhdX3ixU09stJCekhyqAXQReA=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741374926; v=1; b=4SPV/4CTntteAPfTHQIbYPWoa5IEAtDmW93eRqKCGjq0Azqg8kWxta+zXF0efh/A6CCCxmie C4OIIysX55huZMLJDdGC9+zmxyiy5oXnH5hwQGcmzXJbTNwtgeqaM3w1/Lrr8m32Wexuz72g5gA Me6/cldY17NLslKV7O7gj9cifgC+ACtFQOusHZzs2ZDC7NkcJU3z17L/p/nNcMBgnr3tY2rXfXd QddBFy6P5tFhYASVHmmYMKu1jGgVFhJ3eQ+4FWy3UI/d9WGN743+eS7K6ca4F3cymagFPJ1IgSD oxSm5ENoXvXPZYK03VpgoBLRImrXd3gQLUIzIovcg1BmQ== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-web.scm (gunicorn)[arguments] {phases}: Remove 'check phase and migrate its flags to... {test-flags}: ...here. --- gnu/packages/python-web.scm | 16 +++++----------- 1 file changed, 5 insertions(+), 11 deletions(-) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 7495616f2e..4765ab2358 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -7304,23 +7304,17 @@ (define-public gunicorn (outputs '("out" "doc")) (build-system pyproject-build-system) (arguments - `(#:phases + `(#:test-flags + ;; Disable the geventlet tests because eventlet uses dnspython, which + ;; does not work in the build container due to lack of /etc/resolv.conf + '("--ignore=tests/workers/test_geventlet.py") + #:phases (modify-phases %standard-phases (add-after 'build 'build-doc (lambda _ (invoke "make" "-C" "docs" "PAPER=a4" "html" "info") (delete-file "docs/build/texinfo/Makefile") (delete-file "docs/build/texinfo/Gunicorn.texi"))) - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (if tests? - (begin - (invoke "pytest" "-vv" - ;; Disable the geventlet tests because eventlet uses - ;; dnspython, which does not work in the build - ;; container due to lack of /etc/resolv.conf, etc. - "--ignore=tests/workers/test_geventlet.py")) - (format #t "test suite not run~%")))) (add-after 'install 'install-doc (lambda* (#:key outputs #:allow-other-keys) (let* ((doc (string-append (assoc-ref outputs "doc") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 07 14:15:40 2025 Received: (at 76835) by debbugs.gnu.org; 7 Mar 2025 19:15:40 +0000 Received: from localhost ([127.0.0.1]:50390 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tqdAa-000318-1r for submit@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:40 -0500 Received: from 18.mo582.mail-out.ovh.net ([46.105.73.110]:43801) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tqdAR-0002zV-Ja for 76835@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:32 -0500 Received: from director6.ghost.mail-out.ovh.net (unknown [10.109.140.151]) by mo582.mail-out.ovh.net (Postfix) with ESMTP id 4Z8bbP1ZrKz1Z3d for <76835@debbugs.gnu.org>; Fri, 7 Mar 2025 19:15:29 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-kw76w (unknown [10.108.54.199]) by director6.ghost.mail-out.ovh.net (Postfix) with ESMTPS id E624E1FDC7; Fri, 7 Mar 2025 19:15:28 +0000 (UTC) Received: from ngraves.fr ([37.59.142.102]) by ghost-submission-5b5ff79f4f-kw76w with ESMTPSA id IBUTH9BFy2fAfAgA0kyIrA (envelope-from ); Fri, 07 Mar 2025 19:15:28 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-102R00472b8844e-830b-44d4-a1f3-86ba3783e76e, 93CD87FFD4632086FD827B47E208BFE70AFEC0F0) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH 04/15] gnu: Add python-rrdtool. Date: Fri, 7 Mar 2025 20:15:02 +0100 Message-ID: <20250307191522.22228-4-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250307191522.22228-1-ngraves@ngraves.fr> References: <20250307191522.22228-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5030802259838952162 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduuddugeejucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfgggtgfesthekredtredtjeenucfhrhhomheppfhitgholhgrshcuifhrrghvvghsuceonhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrqeenucggtffrrghtthgvrhhnpedvffehgeekhfekgffgleehffetiefggeeitdduteekfffhkeehveejfeejledtieenucffohhmrghinhepghhithhhuhgsrdgtohhmnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutddvnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehkedvmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=wMRE1Fc/pApLWEuVB1/QIAePlLZP9LiZVmvqASusjCY=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741374929; v=1; b=HIO1xIX9OfH0sE0PQ6sJMnSD+zXLj8ChuGVzmPBv/UP+3jNUT3Vba1DIF6vwWgGo0LdQoWO+ fYKeTEC7Hvd7sXBXfLJEevFRKAmMY0QfupVi1RnBa53veYyHY3ZVdGM0V2cCOazMuRWYa1TCYn7 kioQTVFt8I9gh0lVyV7xWV1Xfmj7rZVlrQAmszgw3f1D8uvCV7eOPyReGLX9IFEHVV9TkiwKNZg tqQzrwpL20YEJuYGWA8YjLyzuYuNzs+j7YSn5MiR15RFQSX/nUMb/gvcs4kSIJOJXV0dJez/i4m JrGAtz5REr3mKwdOt7x+tyndl+JpGtcwm7GojG7P8uO8g== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/monitoring.scm (python-rrdtool): New variable. --- gnu/packages/monitoring.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm index 01b554d9aa..b75500fc08 100644 --- a/gnu/packages/monitoring.scm +++ b/gnu/packages/monitoring.scm @@ -14,6 +14,7 @@ ;;; Copyright © 2022 Hartmut Goebel ;;; Copyright © 2022 ( ;;; Copyright © 2022 Mathieu Laparie +;;; Copyright © 2025 Nicolas Graves ;;; ;;; This file is part of GNU Guix. ;;; @@ -839,6 +840,25 @@ (define-public pw @end itemize") (license license:bsd-2))) +(define-public python-rrdtool + (package + (name "python-rrdtool") + (version "0.1.16") + (source + (origin + (method url-fetch) + (uri (pypi-uri "rrdtool" version)) + (sha256 + (base32 "0l8lbarzfwbwnq9jm9gv4mmrxgjlb9hbz27sa8b703qa7s5zy2jz")))) + (build-system pyproject-build-system) + (arguments (list #:tests? #f)) ; No tests in pypi archive + (inputs (list rrdtool)) + (native-inputs (list python-setuptools python-wheel)) + (home-page "https://github.com/commx/python-rrdtool") + (synopsis "Python bindings for rrdtool") + (description "This package provides Python bindings for rrdtool.") + (license license:lgpl2.1))) + (define-public python-statsd (package (name "python-statsd") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 07 14:15:40 2025 Received: (at 76835) by debbugs.gnu.org; 7 Mar 2025 19:15:40 +0000 Received: from localhost ([127.0.0.1]:50392 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tqdAa-00031L-Hg for submit@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:40 -0500 Received: from 1.mo583.mail-out.ovh.net ([188.165.57.91]:42883) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tqdAS-0002zW-8J for 76835@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:33 -0500 Received: from director10.ghost.mail-out.ovh.net (unknown [10.109.148.29]) by mo583.mail-out.ovh.net (Postfix) with ESMTP id 4Z8bbQ17l9z1b4Z for <76835@debbugs.gnu.org>; Fri, 7 Mar 2025 19:15:30 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-bk5fc (unknown [10.110.164.171]) by director10.ghost.mail-out.ovh.net (Postfix) with ESMTPS id CEFF71FDB7; Fri, 7 Mar 2025 19:15:29 +0000 (UTC) Received: from ngraves.fr ([37.59.142.95]) by ghost-submission-5b5ff79f4f-bk5fc with ESMTPSA id WfpdK9FFy2eZJB0AdTKzfQ (envelope-from ); Fri, 07 Mar 2025 19:15:29 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-95G001ec71d642-6231-4396-8cbe-2ef2082454ef, 93CD87FFD4632086FD827B47E208BFE70AFEC0F0) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH 05/15] gnu: python-h2: Fix test-flags. Date: Fri, 7 Mar 2025 20:15:03 +0100 Message-ID: <20250307191522.22228-5-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250307191522.22228-1-ngraves@ngraves.fr> References: <20250307191522.22228-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5031083737880126178 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduuddugeekucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrdelheenucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheekfegmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=xQRgEjSW2xWvYaoyAzEURgSSVTlhHit+rDSzlN7Cl+8=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741374930; v=1; b=mhHNJru3fFLvPZTtAvmYv6nhSOl924qLawi1dfLw0LwFTcX/yB6XJaA49Ei55ZksVkApcia7 wDmX9WtmiwDUDJn36LxNU6azHaDeFd3+vMYjBO6zz1Pggk69pxYWgJ2YSrPIMRAJUKNqtNgw2sP XKkJjnXM/w1Q4NnxSv3iwWNnAVSgdhqmLdUMH3ft2bVqDrypsR7DIL2iizLmy/UcrDE6osoew6C fMBaTSTnG0ElvwlCBQEPq/cu9FVCeH+GlJmf3pxMuBXbtXF3XQGEZs//aLJdsyXH6mMeDRToQ3r DbWVCSsGYabtv3+5jIsKMeF9ETBPcXxdjmqxyml8rlWyQ== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-web.scm (python-h2)[arguments]{test-flags}: Fix quoting. --- gnu/packages/python-web.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 4765ab2358..2438fba134 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -2483,9 +2483,9 @@ (define-public python-h2 (string-join (list "not test_remotesettingschanged_repr" ;; This test exceededs the Hypothesis deadline. - ,@(if (target-riscv64?) - `("test_changing_max_frame_size") - '()) + #$@(if (target-riscv64?) + #~("test_changing_max_frame_size") + #~()) "test_streamreset_repr" "test_settingsacknowledged_repr" "test_connectionterminated_repr[None-None]" -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 07 14:15:42 2025 Received: (at 76835) by debbugs.gnu.org; 7 Mar 2025 19:15:42 +0000 Received: from localhost ([127.0.0.1]:50396 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tqdAb-00031V-3m for submit@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:42 -0500 Received: from 10.mo584.mail-out.ovh.net ([188.165.33.109]:60765) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tqdAS-0002za-OI for 76835@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:34 -0500 Received: from director6.ghost.mail-out.ovh.net (unknown [10.109.176.101]) by mo584.mail-out.ovh.net (Postfix) with ESMTP id 4Z8bbR01Hfz1R4g for <76835@debbugs.gnu.org>; Fri, 7 Mar 2025 19:15:30 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-54gg8 (unknown [10.110.101.130]) by director6.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 9F5741FD97; Fri, 7 Mar 2025 19:15:30 +0000 (UTC) Received: from ngraves.fr ([37.59.142.100]) by ghost-submission-5b5ff79f4f-54gg8 with ESMTPSA id Let4H9JFy2d4DxEAo4v8og (envelope-from ); Fri, 07 Mar 2025 19:15:30 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-100R003f8366f1e-7275-40ee-9da4-8f288c20df25, 93CD87FFD4632086FD827B47E208BFE70AFEC0F0) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH 06/15] gnu: graphite-web: Update to 1.1.10-2.49c28e2. Date: Fri, 7 Mar 2025 20:15:04 +0100 Message-ID: <20250307191522.22228-6-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250307191522.22228-1-ngraves@ngraves.fr> References: <20250307191522.22228-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5031083733926339298 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduuddugeekucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnheptdegffefuddutdeuiedujeeiveefjefhjeeugeevudduleffjeeiueehtdelveejnecuffhomhgrihhnpehgrhgrphhhihhtvggrphhprdhorhhgpdhgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddruddttdenucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheekgegmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=g4QVj1INg+8sLxsWuWBB5nJMddPm5VfBS6Z40M2svLk=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741374931; v=1; b=zElzKzhiCMUkwJyBaeHkbyS9Fwl+4GC/fhd+OMiYj4u6voJ8x2/DkKoH9J9NAOI4Wdpx47lX xG4oPMdP8y0IVfwPYSX44lPqaxDPaDvPvqWuVOyjIccqKsACMY0X9DhlaSJgjXdEUgR+x20+M99 UevGV/jlo8EEB+1gfPZP9PboKxi4QKZLiNQZT0AGnsyak5pBipZUUunlsdbckPz7+zHXSVNXd+a w77hoO/PoYZWxp1kX33MtNmyzpXhzTIAUNlbX77F3vDnXvBTvOiyuFx6Cq9V7f7UgF2QjLoJPaQ qYNYB2f0R30t78JyLd8Jb2nS9sbWyPs7ns/yyyzTfK3oA== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/monitoring.scm (graphite-web): Update to 1.1.10-2.49c28e2. --- gnu/packages/monitoring.scm | 99 +++++++++++++++++++++++-------------- 1 file changed, 62 insertions(+), 37 deletions(-) diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm index b75500fc08..1009c32783 100644 --- a/gnu/packages/monitoring.scm +++ b/gnu/packages/monitoring.scm @@ -69,6 +69,7 @@ (define-module (gnu packages monitoring) #:use-module (gnu packages prometheus) #:use-module (gnu packages python) #:use-module (gnu packages python-build) + #:use-module (gnu packages python-science) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (gnu packages rrdtool) @@ -461,45 +462,69 @@ (define-public python-carbon (license license:asl2.0))) (define-public graphite-web - (package - (name "graphite-web") - (version "1.1.10") - (source - (origin - (method url-fetch) - (uri (pypi-uri "graphite-web" version)) - (sha256 - (base32 - "0nnk3kwn0b6bq9xnmv9bac6hpcbdgpgwf283c1ck5nm80panh61z")))) - (build-system python-build-system) - (arguments - `(#:tests? #f ;XXX: not in PyPI release & requires database - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'relax-requirements - (lambda _ - (substitute* "setup.py" - ;; Allow newer versions of django-tagging. - (("django-tagging==") "django-tagging>=") - ;; And Django. - (("Django>=1\\.8,<3\\.1") "Django>=1.8,<4")))) - ;; Don't install to /opt - (add-after 'unpack 'do-not-install-to-/opt - (lambda _ (setenv "GRAPHITE_NO_PREFIX" "1") #t))))) - (propagated-inputs - (list python-cairocffi - python-django-3.2 - python-django-tagging - python-pyparsing - python-pytz - python-six - python-urllib3)) - (home-page "https://graphiteapp.org/") - (synopsis "Scalable realtime graphing system") - (description "Graphite is a scalable real-time graphing system that does + (let ((commit "49c28e2015d605ad9ec93524f7076dd924a4731a") + (revision "2")) + (package + (name "graphite-web") + (version (git-version "1.1.10" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/graphite-project/graphite-web") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0bcc6jh7gyp8f54dzy4zza1z46gk3530r952pi86irf834z106sg")))) + (build-system pyproject-build-system) + (arguments + `(#:tests? #f ;XXX: Requires database, unable to run now + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "setup.py" + ;; Allow newer versions of django-tagging. + (("django-tagging==") "django-tagging>=") + ;; And Django. + (("Django>=3\\.2,<4") "Django>=4,<5")))) + ;; Don't install to /opt + (add-after 'unpack 'do-not-install-to-/opt + (lambda _ (setenv "GRAPHITE_NO_PREFIX" "1"))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (mkdir-p "storage/log/webapp") + (with-directory-excursion "webapp" + (invoke "./manage.py" "test" "--pythonpath=." "tests" + "-k" (string-join + (list + "not test_dashboard_save_temporary_xss_key" + "test_dashboard_save_temporary_xss_name") + " and not "))))))))) + (native-inputs + (list python-carbon + python-mock + python-pytest + python-rrdtool + python-setuptools + python-tzdata + python-wheel + python-whisper)) + (propagated-inputs + (list python-cairocffi + python-django-4.2 + python-django-tagging + python-pyparsing + python-pytz + python-six + python-urllib3)) + (home-page "https://graphiteapp.org/") + (synopsis "Scalable realtime graphing system") + (description "Graphite is a scalable real-time graphing system that does two things: store numeric time-series data, and render graphs of this data on demand.") - (license license:asl2.0))) + (license license:asl2.0)))) (define-public python-prometheus-client (package -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 07 14:15:42 2025 Received: (at 76835) by debbugs.gnu.org; 7 Mar 2025 19:15:42 +0000 Received: from localhost ([127.0.0.1]:50402 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tqdAc-00031Y-2K for submit@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:42 -0500 Received: from 6.mo576.mail-out.ovh.net ([46.105.50.107]:54953) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tqdAU-0002zz-Gr for 76835@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:35 -0500 Received: from director11.ghost.mail-out.ovh.net (unknown [10.109.148.29]) by mo576.mail-out.ovh.net (Postfix) with ESMTP id 4Z8bbS6G2wz23MB for <76835@debbugs.gnu.org>; Fri, 7 Mar 2025 19:15:32 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-bzsff (unknown [10.110.178.72]) by director11.ghost.mail-out.ovh.net (Postfix) with ESMTPS id BA0F41FDF0; Fri, 7 Mar 2025 19:15:32 +0000 (UTC) Received: from ngraves.fr ([37.59.142.106]) by ghost-submission-5b5ff79f4f-bzsff with ESMTPSA id ob+/J9RFy2d1TgAAjNYsJg (envelope-from ); Fri, 07 Mar 2025 19:15:32 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-106R006fbd26f38-9998-4e88-87eb-add6d0a9e695, 93CD87FFD4632086FD827B47E208BFE70AFEC0F0) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH 08/15] gnu: python-cfn-lint: Update to 1.28.0. Date: Fri, 7 Mar 2025 20:15:06 +0100 Message-ID: <20250307191522.22228-8-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250307191522.22228-1-ngraves@ngraves.fr> References: <20250307191522.22228-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5031646686777500386 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduuddugeekucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutdeinecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehjeeimgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=wZ3cqs6f9kwpaAl1fph2tDH1+37AFn83Nn7yMVXiJAY=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741374933; v=1; b=NfS1nGnaM7e3WS1pRFPa1wB/4WkhwQEkV2Ce4q9x5UXmpDlMvXhlC0XWZbt+Z6u0499UwjfB P0tC3tRsXgtu5skwFOFgrKOx8epemuKmLSUYT0gu4aka1yVZcjSe6LgScqo+dr73hVDdvnGxxiL xt0jg4/fQ24qnJms7cH9/9Fk4/szt8cCEp7W31pzISEFsZpf1go8fKTnt7z1gfgdhP1w8lYq5pe sJmWbxFzwdEN54S4qJ9ERAJOoUBP4D4+XFOuhwoDbg2nMlWxDj24HodGJZ1YCTwv4dzzni2+u7n 5h9cGkTMumH/v6iH9GjIOXL+4MoLuOMKoZxoZBPf21IBA== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-web.scm (python-cfn-lint): Update to 1.28.0. --- gnu/packages/python-web.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 2438fba134..77a4e5c8f1 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -1659,7 +1659,7 @@ (define-public python-cbor2 (define-public python-cfn-lint (package (name "python-cfn-lint") - (version "1.22.1") + (version "1.28.0") (source (origin (method git-fetch) (uri (git-reference @@ -1668,7 +1668,7 @@ (define-public python-cfn-lint (file-name (git-file-name name version)) (sha256 (base32 - "1zz121r9yv1irwdbk07s7958fh43h3r3q39qcj0gv4kpgb0vdf32")))) + "0n1v05516s0zy64v1a7f7pj5h9lscvbkkwnlgmys7g8lydlgf0v4")))) (build-system pyproject-build-system) (arguments (list -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 07 14:15:43 2025 Received: (at 76835) by debbugs.gnu.org; 7 Mar 2025 19:15:43 +0000 Received: from localhost ([127.0.0.1]:50404 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tqdAc-00031s-Rm for submit@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:43 -0500 Received: from 6.mo550.mail-out.ovh.net ([46.105.43.205]:41443) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tqdAU-0002zy-FK for 76835@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:35 -0500 Received: from director7.ghost.mail-out.ovh.net (unknown [10.109.176.101]) by mo550.mail-out.ovh.net (Postfix) with ESMTP id 4Z8bbS223xz1Rvh for <76835@debbugs.gnu.org>; Fri, 7 Mar 2025 19:15:32 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-j5n45 (unknown [10.110.188.135]) by director7.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 071391FE5B; Fri, 7 Mar 2025 19:15:31 +0000 (UTC) Received: from ngraves.fr ([37.59.142.96]) by ghost-submission-5b5ff79f4f-j5n45 with ESMTPSA id bkFJIdNFy2d1vAUA+QF25Q (envelope-from ); Fri, 07 Mar 2025 19:15:31 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-96R0013ffe47f3-b4fd-4de7-b822-7dc3c044ae63, 93CD87FFD4632086FD827B47E208BFE70AFEC0F0) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH 07/15] gnu: python-nptyping: Ignore failing test. Date: Fri, 7 Mar 2025 20:15:05 +0100 Message-ID: <20250307191522.22228-7-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250307191522.22228-1-ngraves@ngraves.fr> References: <20250307191522.22228-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5031646687060681442 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduuddugeekucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrdelieenucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheehtdgmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=THlLWPcMakBJDUHjj0/sbBudDoI9wipCL8rbPvhBS3A=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741374932; v=1; b=aRqFR1Op+LEQKhUIzsOokw65Hv0eTveNitDYc5M0U63+EMrBOYh4WaQyUvRvgNQVdh4PLM0f XIRnRl8J991RNwu/ksnjWMSEy1v/rgxr8AdGUcsVYXeU1P0+JZRcejEetLa9JN/khvKMh/+uGxE dS17jEVM6UHZK7sDjXqZAZ12UzLSZfFLsUOAAz7w175SiPfC6uq+HMZbUbyhX5raeY7yBSHf/7+ vXNDwYSXxfCtlmxrnhQAQhWSDwh5u9JJDq3WRa5/VmoxjcOyEqtKuNNU9OrQHzvfj9GuYA+hhj9 pkjyZf2ReuTodcG2i1LCsN/v/zPpfOdZQXgfVqEObOObQ== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-check.scm (python-nptyping)[arguments] {test-flags}: Ignore failing test. --- gnu/packages/python-check.scm | 2 ++ 1 file changed, 2 insertions(+) diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm index c969499521..1138e287f1 100644 --- a/gnu/packages/python-check.scm +++ b/gnu/packages/python-check.scm @@ -2601,6 +2601,8 @@ (define-public python-nptyping (list #:test-flags #~(list + ;; This one started failing with the last update of Numpy. + "--ignore=tests/test_beartype.py" ;; Multiple failures due to undefined names (typing package must be ;; too outdated, or perhaps they use a newer pandas). "--ignore=tests/test_mypy.py" -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 07 14:15:44 2025 Received: (at 76835) by debbugs.gnu.org; 7 Mar 2025 19:15:44 +0000 Received: from localhost ([127.0.0.1]:50406 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tqdAd-000326-C6 for submit@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:43 -0500 Received: from 19.mo582.mail-out.ovh.net ([188.165.56.177]:42377) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tqdAV-00030E-Jg for 76835@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:36 -0500 Received: from director1.ghost.mail-out.ovh.net (unknown [10.109.139.163]) by mo582.mail-out.ovh.net (Postfix) with ESMTP id 4Z8bbT6W6Bz1Z5Y for <76835@debbugs.gnu.org>; Fri, 7 Mar 2025 19:15:33 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-tw8jp (unknown [10.110.168.242]) by director1.ghost.mail-out.ovh.net (Postfix) with ESMTPS id AACE11FE72; Fri, 7 Mar 2025 19:15:33 +0000 (UTC) Received: from ngraves.fr ([37.59.142.103]) by ghost-submission-5b5ff79f4f-tw8jp with ESMTPSA id lEOEGdVFy2chxQkAAC5wZA (envelope-from ); Fri, 07 Mar 2025 19:15:33 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-103G005daa1b4ce-8002-47b7-a458-438b67bbd15a, 93CD87FFD4632086FD827B47E208BFE70AFEC0F0) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH 09/15] gnu: patchwork: Update to 3.2.1. Date: Fri, 7 Mar 2025 20:15:07 +0100 Message-ID: <20250307191522.22228-9-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250307191522.22228-1-ngraves@ngraves.fr> References: <20250307191522.22228-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5031928161005920994 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduuddugeejucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutdefnecuvehluhhsthgvrhfuihiivgepudenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehkedvmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=RCnreOu/z7ZbXdD2GVsyiDvN4V7fZy4wOqFMI8XnqDM=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741374934; v=1; b=2+CttZk1hc1dEIx+hRiqlwUGNe90Zy2fmhbBQV1AQpFVHqQaGXujemX3jF6nIPEusHnb9Rwt 1RFb+/I/s9MAiYXO+PCJCPWZn12MqKNnz2+L6lfi7wzw7UGu3u7H/oOUuaERyGoH2RwLVOwOkcv tcumDmXRCtKItXQ1iedl29eoKQ5nfltcnCeu0JvPGEaUwmtsDATkrJCQRkXULAXmX2ouAtSpvpe XFnICqW4DvCY44/vVwK8kd/EJpKXVb+QWW9gww+QdwMzONJBX4LluoUYUzdhFtwcLKokY1RGjrC FbXl3J7PMyQ0X43163zaSS6UZCeYLs+kICBG+O8H/+rLQ== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/patchutils.scm (patchwork): Update to 3.2.1. --- gnu/packages/patchutils.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/patchutils.scm b/gnu/packages/patchutils.scm index 3cd3507b07..b2b84046b4 100644 --- a/gnu/packages/patchutils.scm +++ b/gnu/packages/patchutils.scm @@ -370,7 +370,7 @@ (define-public meld (define-public patchwork (package (name "patchwork") - (version "3.1.1") + (version "3.2.1") (source (origin (method git-fetch) (uri (git-reference @@ -379,7 +379,7 @@ (define-public patchwork (file-name (git-file-name name version)) (sha256 (base32 - "0is9d4gf93jcbyshyj2k3kjyrjnvimrm6bai6dbcx630md222j5w")))) + "04ikawdyhjwspxvhazbp5f5vym672y0jcw8rd2m75h9ipcpnyxim")))) (build-system python-build-system) (arguments `(;; TODO: Tests require a running database @@ -503,7 +503,7 @@ (define pythonpath (inputs (list python-wrapper)) (propagated-inputs - (list python-django-3.2 + (list python-django ;; TODO: Make this configurable python-psycopg2 python-mysqlclient -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 07 14:15:44 2025 Received: (at 76835) by debbugs.gnu.org; 7 Mar 2025 19:15:44 +0000 Received: from localhost ([127.0.0.1]:50408 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tqdAe-00032D-1L for submit@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:44 -0500 Received: from 13.mo582.mail-out.ovh.net ([188.165.56.124]:58455) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tqdAW-00030R-CI for 76835@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:37 -0500 Received: from director5.ghost.mail-out.ovh.net (unknown [10.108.17.23]) by mo582.mail-out.ovh.net (Postfix) with ESMTP id 4Z8bbV5h15z1Z6G for <76835@debbugs.gnu.org>; Fri, 7 Mar 2025 19:15:34 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-tw8jp (unknown [10.110.164.115]) by director5.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 91C711FD9C; Fri, 7 Mar 2025 19:15:34 +0000 (UTC) Received: from ngraves.fr ([37.59.142.102]) by ghost-submission-5b5ff79f4f-tw8jp with ESMTPSA id Hc1ZFNZFy2ckxQkAAC5wZA (envelope-from ); Fri, 07 Mar 2025 19:15:34 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-102R004acac546a-5e4a-4374-9d75-dc9a0b4cf56d, 93CD87FFD4632086FD827B47E208BFE70AFEC0F0) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH 10/15] gnu: Remove python-django-3.2. Date: Fri, 7 Mar 2025 20:15:08 +0100 Message-ID: <20250307191522.22228-10-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250307191522.22228-1-ngraves@ngraves.fr> References: <20250307191522.22228-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5032209637566440162 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduuddugeejucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutddvnecuvehluhhsthgvrhfuihiivgepudenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehkedvmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=To/s2b8m1fi88PjP78tZwz34yOBk4LlIrTxg0tdSnYk=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741374934; v=1; b=Zj2gmEPoSTNXvr9f/osWiQ7jutL8aCOVdRzaGXtfvAVcQ8HTAR1yp6AusS5Pzes97PCCn9jW KXCepqg40xWbSKZUMhDiDjqeKO5KPyTb5MFiSI2rJr18b4V80Qls8CL29Glp1ccbgdtVWfFkwzw Jnk7y74uw0QEjDlnenz8JWLDxYMulMkBcJJlPAJ7/VthUOI1kcP3Ve2Jj3BJoI5FQM/FR9ua/OW W0RUrDDzqxxqg2CAhmjkprRD3FnlZLRudt0vHZLwfHeWuF4cug2nBsjjyCaJZ2Z1NFVgj65dehb b8mUd8tuYPj6jB7vNhzZSC65bFESyQOWWZsoTNI7rlRmA== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/django.scm (python-django-3.2): Delete variable. --- gnu/packages/django.scm | 20 ++------------------ 1 file changed, 2 insertions(+), 18 deletions(-) diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm index cb9df0d2df..20522231ac 100644 --- a/gnu/packages/django.scm +++ b/gnu/packages/django.scm @@ -148,26 +148,10 @@ (define-public python-django-4.2 ;; This CVE seems fixed since 4.2.1. (lint-hidden-cve . ("CVE-2023-31047")))))) -(define-public python-django-3.2 - (package - (inherit python-django-4.2) - (version "3.2.21") - (source (origin - (method url-fetch) - (uri (pypi-uri "Django" version)) - (sha256 - (base32 - "0g3zm2glh76g31q06g6fwkwvkrphjj3mnap5sgk1hx3v9r44rpm5")))) - (native-search-paths '()) ;no need for TZDIR - (propagated-inputs - (modify-inputs (package-propagated-inputs python-django-4.2) - ;; Django 4.0 deprecated pytz in favor of Pythons built-in zoneinfo. - (append python-pytz))))) - ;; archivebox requires django>=3.1.3,<3.2 (define-public python-django-3.1.14 (package - (inherit python-django-3.2) + (inherit python-django-4.2) (version "3.1.14") (source (origin (method url-fetch) @@ -176,7 +160,7 @@ (define-public python-django-3.1.14 (base32 "0ix3v2wlnplv78zxjrlw8z3hiap2d5mxvk0ny2fc65526shsb93j")))) (propagated-inputs - (modify-inputs (package-propagated-inputs python-django-3.2) + (modify-inputs (package-propagated-inputs python-django-4.2) ;; Django 4.0 deprecated pytz in favor of Pythons built-in zoneinfo. (append python-pytz))))) -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 07 14:15:44 2025 Received: (at 76835) by debbugs.gnu.org; 7 Mar 2025 19:15:44 +0000 Received: from localhost ([127.0.0.1]:50410 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tqdAe-00032N-EX for submit@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:44 -0500 Received: from 16.mo561.mail-out.ovh.net ([188.165.56.217]:57927) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tqdAX-00030d-AW for 76835@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:38 -0500 Received: from director4.ghost.mail-out.ovh.net (unknown [10.108.2.235]) by mo561.mail-out.ovh.net (Postfix) with ESMTP id 4Z8bbW6D9Lz1V2x for <76835@debbugs.gnu.org>; Fri, 7 Mar 2025 19:15:35 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-6884f (unknown [10.111.174.60]) by director4.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 92ACB1FE83; Fri, 7 Mar 2025 19:15:35 +0000 (UTC) Received: from ngraves.fr ([37.59.142.99]) by ghost-submission-5b5ff79f4f-6884f with ESMTPSA id LpG5D9dFy2c9AwUA5kljzQ (envelope-from ); Fri, 07 Mar 2025 19:15:35 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-99G00373d78f31-f90c-40a6-8a4e-5409f6e24116, 93CD87FFD4632086FD827B47E208BFE70AFEC0F0) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH 11/15] gnu: python-uqbar: Update to 7.0.0. 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[propagated-inputs]: Replace python-sphinx-5 by python-sphinx, recursively. --- gnu/packages/graphviz.scm | 11 +++-------- 1 file changed, 3 insertions(+), 8 deletions(-) diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm index defd53df73..c23369acc4 100644 --- a/gnu/packages/graphviz.scm +++ b/gnu/packages/graphviz.scm @@ -208,7 +208,7 @@ (define-public python-pygraphviz (define-public python-uqbar (package (name "python-uqbar") - (version "0.6.9") + (version "7.0.0") (source (origin (method git-fetch) @@ -217,7 +217,7 @@ (define-public python-uqbar (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "037qj3rymm6xzdpklddfhmfp2p1bq9fi3jrvxj6gmharphd5z869")))) + (base32 "0qa32d2z7bg3h26r18dv55g9lghw59wln7rkcciavyyjh553q430")))) (build-system pyproject-build-system) (arguments ; XXX: Disable failing tests. (list #:test-flags '(list "tests" "-k" "not test_find_executable \ @@ -232,12 +232,7 @@ (define-public python-uqbar python-setuptools python-wheel)) (propagated-inputs - (list python-black python-sphinx-5 python-unidecode - (package/inherit python-sphinx-rtd-theme - (propagated-inputs - (modify-inputs - (package-propagated-inputs python-sphinx-rtd-theme) - (replace "python-sphinx" python-sphinx-5)))))) + (list python-black python-sphinx python-unidecode python-sphinx-rtd-theme)) (home-page "https://github.com/josiah-wolf-oberholtzer/uqbar") (synopsis "Tools for building documentation with Sphinx, Graphviz and LaTeX") (description -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 07 14:15:45 2025 Received: (at 76835) by debbugs.gnu.org; 7 Mar 2025 19:15:45 +0000 Received: from localhost ([127.0.0.1]:50412 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tqdAe-00032T-Px for submit@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:45 -0500 Received: from 4.mo561.mail-out.ovh.net ([178.33.46.10]:49423) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tqdAY-00030k-SA for 76835@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:39 -0500 Received: from director4.ghost.mail-out.ovh.net (unknown [10.108.2.235]) by mo561.mail-out.ovh.net (Postfix) with ESMTP id 4Z8bbY07ZMz1V9c for <76835@debbugs.gnu.org>; Fri, 7 Mar 2025 19:15:37 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-qlcsn (unknown [10.108.42.46]) by director4.ghost.mail-out.ovh.net (Postfix) with ESMTPS id B6AEF1FE7F; Fri, 7 Mar 2025 19:15:36 +0000 (UTC) Received: from ngraves.fr ([37.59.142.110]) by ghost-submission-5b5ff79f4f-qlcsn with ESMTPSA id pelfGdhFy2fAPQQAiuAbcg (envelope-from ); Fri, 07 Mar 2025 19:15:36 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-110S0046f597ad1-093e-4b54-aeb3-ea05b0417295, 93CD87FFD4632086FD827B47E208BFE70AFEC0F0) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH 12/15] gnu: Remove python-sphinx-autodoc-typehints-5. 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(license license:expat))) -(define-public python-sphinx-autodoc-typehints-5 - (package/inherit python-sphinx-autodoc-typehints - (propagated-inputs - (modify-inputs - (package-propagated-inputs python-sphinx-autodoc-typehints) - (replace "python-sphinx" python-sphinx-5))))) - (define-public python-sphinx-pytest (package (name "python-sphinx-pytest") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 07 14:16:04 2025 Received: (at 76835) by debbugs.gnu.org; 7 Mar 2025 19:16:04 +0000 Received: from localhost ([127.0.0.1]:50417 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tqdAx-00033U-8N for submit@debbugs.gnu.org; Fri, 07 Mar 2025 14:16:04 -0500 Received: from 8.mo576.mail-out.ovh.net ([46.105.56.233]:58901) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tqdAa-000310-Q5 for 76835@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:42 -0500 Received: from director9.ghost.mail-out.ovh.net (unknown [10.108.9.185]) by mo576.mail-out.ovh.net (Postfix) with ESMTP id 4Z8bbb1Zyhz23LH for <76835@debbugs.gnu.org>; Fri, 7 Mar 2025 19:15:39 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-rrkpn (unknown [10.111.182.20]) by director9.ghost.mail-out.ovh.net (Postfix) with ESMTPS id BCB941FD62; Fri, 7 Mar 2025 19:15:38 +0000 (UTC) Received: from ngraves.fr ([37.59.142.105]) by ghost-submission-5b5ff79f4f-rrkpn with ESMTPSA id CMpLF9pFy2cE7wQAUF0UpA (envelope-from ); Fri, 07 Mar 2025 19:15:38 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-105G006c2fc144d-6c43-432d-a367-d2068abc9908, 93CD87FFD4632086FD827B47E208BFE70AFEC0F0) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH 14/15] gnu: python-numpy-documentation: Update python-sphinx native-input. 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Adapt phase 'install by removing sphinx.ext.autodoc extension. [native-inputs]: Replace python-sphinx-4 by python-sphinx. Add python-sphinx-design. --- gnu/packages/python-xyz.scm | 14 +++++++++++++- 1 file changed, 13 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index bacfac6c42..6054a88562 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -9684,6 +9684,16 @@ (define-public python-numpy-documentation #:tests? #f ;we're only generating the documentation #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'avoid-external-deps + (lambda _ + ;; XXX: Avoid theme-switcher to avoid sphinx error + ;; TemplateNotFound('theme-switcher.html') + ;; XXX: Avoid version-switcher because it depends on the value + ;; of external https://numpy.org/doc/_static/versions.json + (substitute* "doc/source/conf.py" + (("\ +\"navbar_end\": \\[\"theme-switcher\", \"version-switcher\", ") + "\"navbar_end\": [")))) (add-before 'build 'add-gnu-freefont-to-texmf (lambda _ ;; XXX: The Sphinx-generated tex output specifies the GNU @@ -9729,6 +9739,7 @@ (define-public python-numpy-documentation (("\"contents\"") "'index'") ;; Disable Sphinx extensions that produce broken Texinfo. ((".*'numpydoc'.*") "") + ((".*'sphinx.ext.autodoc'.*") "") ((".*'sphinx.ext.autosummary'.*") "")) (invoke "make" "info" sphinxopts) ;; Install the HTML documentation. @@ -9752,7 +9763,8 @@ (define-public python-numpy-documentation python-pandas python-pydata-sphinx-theme python-scipy ;used by matplotlib - python-sphinx-4 + python-sphinx + python-sphinx-design python-sphinx-panels texinfo (texlive-updmap.cfg -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 07 14:16:04 2025 Received: (at 76835) by debbugs.gnu.org; 7 Mar 2025 19:16:05 +0000 Received: from localhost ([127.0.0.1]:50423 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tqdAy-00033w-CB for submit@debbugs.gnu.org; Fri, 07 Mar 2025 14:16:04 -0500 Received: from 7.mo560.mail-out.ovh.net ([188.165.48.182]:35387) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tqdAb-00031E-K9 for 76835@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:43 -0500 Received: from director11.ghost.mail-out.ovh.net (unknown [10.108.2.235]) by mo560.mail-out.ovh.net (Postfix) with ESMTP id 4Z8bbZ19Lnz1g4k for <76835@debbugs.gnu.org>; Fri, 7 Mar 2025 19:15:37 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-7dstn (unknown [10.110.178.161]) by director11.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 7DDF91FE75; Fri, 7 Mar 2025 19:15:37 +0000 (UTC) Received: from ngraves.fr ([37.59.142.100]) by ghost-submission-5b5ff79f4f-7dstn with ESMTPSA id 0/izF9lFy2cSPCAA6hIoZg (envelope-from ); Fri, 07 Mar 2025 19:15:37 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-100R00377a1d498-d336-428f-90d9-c9d68e62ba59, 93CD87FFD4632086FD827B47E208BFE70AFEC0F0) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH 13/15] gnu: python-sphinx-panels: Update input to python-sphinx-5. 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[propagated-inputs]: Replace python-sphinx-4 by python-sphinx-5. --- gnu/packages/sphinx.scm | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm index 5f06cb04f5..024bfe986a 100644 --- a/gnu/packages/sphinx.scm +++ b/gnu/packages/sphinx.scm @@ -608,7 +608,15 @@ (define-public python-sphinx-panels (sha256 (base32 "1ivqz6yv96a2jp59kylg1gbkrmzq6zwilppz3ij0zrkjn25zb97k")))) (build-system pyproject-build-system) - (propagated-inputs (list python-docutils-0.15 python-sphinx-4)) + (arguments + (list #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'loosen-requirements + (lambda _ + (substitute* "setup.py" + (("sphinx>=2,<5") + "sphinx>=2,<6"))))))) + (propagated-inputs (list python-docutils-0.15 python-sphinx-5)) (native-inputs (list python-pytest python-pytest-regressions -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 07 14:16:05 2025 Received: (at 76835) by debbugs.gnu.org; 7 Mar 2025 19:16:05 +0000 Received: from localhost ([127.0.0.1]:50426 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tqdAy-000346-Tq for submit@debbugs.gnu.org; Fri, 07 Mar 2025 14:16:05 -0500 Received: from 10.mo582.mail-out.ovh.net ([87.98.157.236]:55259) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tqdAb-00031F-Jw for 76835@debbugs.gnu.org; Fri, 07 Mar 2025 14:15:43 -0500 Received: from director5.ghost.mail-out.ovh.net (unknown [10.108.2.235]) by mo582.mail-out.ovh.net (Postfix) with ESMTP id 4Z8bbc0WBzz1Z90 for <76835@debbugs.gnu.org>; Fri, 7 Mar 2025 19:15:40 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-s45fz (unknown [10.108.42.46]) by director5.ghost.mail-out.ovh.net (Postfix) with ESMTPS id C600E1FD9C; Fri, 7 Mar 2025 19:15:39 +0000 (UTC) Received: from ngraves.fr ([37.59.142.97]) by ghost-submission-5b5ff79f4f-s45fz with ESMTPSA id 6jSXIdtFy2eHBAUARHpXbQ (envelope-from ); Fri, 07 Mar 2025 19:15:39 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-97G002efdf4798-c680-418a-a792-cd59a8ad9151, 93CD87FFD4632086FD827B47E208BFE70AFEC0F0) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH 15/15] gnu: Remove python-sphinx-4. Date: Fri, 7 Mar 2025 20:15:13 +0100 Message-ID: <20250307191522.22228-15-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250307191522.22228-1-ngraves@ngraves.fr> References: <20250307191522.22228-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5033898483941892858 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: -100 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduuddugeejucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucesvcftvggtihhpihgvnhhtshculddquddttddmnecujfgurhephffvvefufffkofgjfhgggfestdekredtredttdenucfhrhhomheppfhitgholhgrshcuifhrrghvvghsuceonhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrqeenucggtffrrghtthgvrhhnpeelffejteeutefhfeekfffffedvudekjeekgfeludeitdfhkeevhfeivdfhffeggeenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddrleejnecuvehluhhsthgvrhfuihiivgepgeenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehkedvmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=48DWSSaGbe86dpeJyH2L0lG8aeCmIm5JHhGt08on/iY=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741374940; v=1; b=OEaezeYSjxWjQUR65dfVOOwqlLytx94VlIK16PQ+eiZqNAtixXJiSJaI7/R2ZL0IdznJ2ybU d0bAQH0Zhi7FfRfEpislS3uxx9+zoYyv/rlZ09+sHkJRDau5ty2pJRJUvwOoqLvY15NSV4RmBWZ 4wIUP0Ifho3ExXxXLuwtmfl6xL8sj+OELFzd1Uj0M9vYhTDF8k/qB4teQtkNSZOwbct4wun3QtH qImzpiXQnploZV09p2tOlixCZ07wdcWACXX8s1H3CCUxeMAOZTBROSEkkgxS1SiMR44DOdBnGZi 61P9bnzUi7mBXZPzZzMRnI+hvLPMnBJeUfks+m+NQc1Kw== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves via Guix-patches via X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) From: Nicolas Graves via Guix-patches via * gnu/packages/sphinx.scm (python-sphinx-4): Delete variable. --- gnu/packages/sphinx.scm | 19 ------------------- 1 file changed, 19 deletions(-) diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm index 024bfe986a..58952049a1 100644 --- a/gnu/packages/sphinx.scm +++ b/gnu/packages/sphinx.scm @@ -267,25 +267,6 @@ (define-public python-sphinx-5 (texlive-updmap.cfg (list texlive-cm-super texlive-tex-gyre)))))) -;; Some packages do not support Sphinx 5 yet. Remove when unused. -(define-public python-sphinx-4 - (package - (inherit python-sphinx-5) - (version "4.5.0") - (source (origin - (method url-fetch) - (uri (pypi-uri "Sphinx" version)) - (sha256 - (base32 - "1rp28jryxwy24y8vpacclqihbizyi6b1s6id86pibvm46ybcmy3v")))) - (propagated-inputs - (modify-inputs (package-propagated-inputs python-sphinx) - (replace "python-docutils" python-docutils-0.15))) - (native-inputs - (modify-inputs (package-native-inputs python-sphinx) - (delete python-flit-core) - (append python-setuptools python-wheel))))) - (define-public python-sphinxcontrib-apidoc (package (name "python-sphinxcontrib-apidoc") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:13 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:13 +0000 Received: from localhost ([127.0.0.1]:34737 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOsQ-0000TV-V0 for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:12 -0400 Received: from 6.mo581.mail-out.ovh.net ([188.165.39.218]:49389) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsL-0000SH-Au for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:04 -0400 Received: from director2.ghost.mail-out.ovh.net (unknown [10.109.140.75]) by mo581.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQ70wNxz1DZR for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:11:58 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-qvqt5 (unknown [10.110.96.7]) by director2.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 677AC1FE3C; Sun, 9 Mar 2025 22:11:58 +0000 (UTC) Received: from ngraves.fr ([37.59.142.113]) by ghost-submission-5b5ff79f4f-qvqt5 with ESMTPSA id y4ouOy0SzmdfPgYAU4hxqg (envelope-from ); Sun, 09 Mar 2025 22:11:58 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-113S0071b7fdfc3-aafa-4b3e-b5c5-9f959311e312, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 01/24] gnu: gunicorn: Migrate 'check phase to pyproject-build-system. Date: Sun, 9 Mar 2025 23:11:09 +0100 Message-ID: <20250309221153.334-1-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 1309984545705616098 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudejieduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffoggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepkeffgeetfffgffejgeejvdffgfdtvdeuueetgfefuedvjeegvdegjeejveeuueevnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrdduudefnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehkedumgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=rBtZRVTmBQn0k7mxS0KhdX3ixU09stJCekhyqAXQReA=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741558319; v=1; b=qbQgWuECCi8VmiuHTS17cRSxbANgw5qiFylI3320BbL/vZOUPLBeenvYNxMe06RpdkLqiokk 8W3oDzyPeL4OmqyUhfDLLAerRMrKCIo25utpaIQgjvc4n/px7aUE2aoZ6z6rWzGX9UbLLVRQvZU CR+rKOtTO9XmNtTziIlCfxCYNRNYJjR/aYC05jxYEKWKo9yNb/N26wuEoIkAlMsk4sZU+hqUQil OkwHZELjMZ29JVxwWD4Kjzd1gIG1yeaVpCNa7FOvrjpWN0NnZ0buk+r8RhbN5UsZeChVl3Thh8N 59sj4NGpAINX8Icn4DL1XXYZO5IbkXDXb74Sckjn6O5ow== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-web.scm (gunicorn)[arguments] {phases}: Remove 'check phase and migrate its flags to... {test-flags}: ...here. --- gnu/packages/python-web.scm | 16 +++++----------- 1 file changed, 5 insertions(+), 11 deletions(-) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 7495616f2e..4765ab2358 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -7304,23 +7304,17 @@ (define-public gunicorn (outputs '("out" "doc")) (build-system pyproject-build-system) (arguments - `(#:phases + `(#:test-flags + ;; Disable the geventlet tests because eventlet uses dnspython, which + ;; does not work in the build container due to lack of /etc/resolv.conf + '("--ignore=tests/workers/test_geventlet.py") + #:phases (modify-phases %standard-phases (add-after 'build 'build-doc (lambda _ (invoke "make" "-C" "docs" "PAPER=a4" "html" "info") (delete-file "docs/build/texinfo/Makefile") (delete-file "docs/build/texinfo/Gunicorn.texi"))) - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (if tests? - (begin - (invoke "pytest" "-vv" - ;; Disable the geventlet tests because eventlet uses - ;; dnspython, which does not work in the build - ;; container due to lack of /etc/resolv.conf, etc. - "--ignore=tests/workers/test_geventlet.py")) - (format #t "test suite not run~%")))) (add-after 'install 'install-doc (lambda* (#:key outputs #:allow-other-keys) (let* ((doc (string-append (assoc-ref outputs "doc") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:16 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:16 +0000 Received: from localhost ([127.0.0.1]:34755 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOsZ-0000UV-Kg for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:15 -0400 Received: from 4.mo583.mail-out.ovh.net ([178.33.111.247]:50447) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsN-0000SP-8V for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:04 -0400 Received: from director5.ghost.mail-out.ovh.net (unknown [10.108.17.189]) by mo583.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQ908cYz1SyV for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:00 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-dcnc9 (unknown [10.110.178.196]) by director5.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 883661FD31; Sun, 9 Mar 2025 22:12:00 +0000 (UTC) Received: from ngraves.fr ([37.59.142.110]) by ghost-submission-5b5ff79f4f-dcnc9 with ESMTPSA id 3vdlGDASzmdY+icApy6uvQ (envelope-from ); Sun, 09 Mar 2025 22:12:00 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-110S004ebd36824-8df7-4a45-8ada-c4ee2478b34d, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 02/24] gnu: python-unyt: Avoid deprecation failure in tests. Date: Sun, 9 Mar 2025 23:11:10 +0100 Message-ID: <20250309221153.334-2-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250309221153.334-1-ngraves@ngraves.fr> References: <20250309221153.334-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 1310547494901572322 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudejiedvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrdduuddtnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehkeefmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=N3LbNrVhtuTVcQGjzeOVOHdvVoYUMrG8/cLSeHFhEQs=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741558321; v=1; b=viuvQ0FJzDW/1EzWzrAsst9bGQ+VseDs2Y71b8tzl4eSYuLpKopJqXSx1KvI5Zk2E2o2PDwW rE1egNLWTaDnenOXDz8mvDHoxFFtpwDYShvXiJD3gdMv58x73nvdJtNKk25jkEqOa6s1z8CBv6e 2TXeTUUlFibsFiI1pa9nk+bZ0T5XLI285RjBCYm1cVBmzY3U0eMujgF7OpftQfr6Zvx08Bt+MxM m0YBu0DB7cd+iVmoA6uydzA6lQDexbF0VdohlV+SQnLBSB8X4hJD7R7Hnn1xJ9L0T5COgrIodE3 ga2WMCJqdzr8MGVzXrTY1HDs6Xmg8bgIf/R6FTunGZiUA== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-science.scm (python-unyt)[arguments] {test-flags}: Ignore failing test. --- gnu/packages/python-science.scm | 3 +++ 1 file changed, 3 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 2fa57f0ab5..ca259356cf 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -2526,6 +2526,9 @@ (define-public python-unyt (sha256 (base32 "0jrq2vhan2h280h6cw1sm5hys2nzmf19w4py64k3nrkc320z9mni")))) (build-system pyproject-build-system) + (arguments + ;; This is a Numpy DeprecationWarning, remove it on next update. + (list #:test-flags ''("-k" "not test_h5_io"))) ;; Pint is optional, but we do not propagate it due to its size. (native-inputs (list python-pint -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:16 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:16 +0000 Received: from localhost ([127.0.0.1]:34757 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOsa-0000Ub-1j for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:16 -0400 Received: from 10.mo584.mail-out.ovh.net ([188.165.33.109]:45249) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsO-0000Su-7D for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:05 -0400 Received: from director11.ghost.mail-out.ovh.net (unknown [10.108.17.189]) by mo584.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQB1tPLz1SyQ for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:02 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-wjxj5 (unknown [10.110.96.89]) by director11.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 055E11FE75; Sun, 9 Mar 2025 22:12:01 +0000 (UTC) Received: from ngraves.fr ([37.59.142.105]) by ghost-submission-5b5ff79f4f-wjxj5 with ESMTPSA id J3bsLTESzmdi7wIA5vKTLA (envelope-from ); Sun, 09 Mar 2025 22:12:01 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-105G00677eec3c9-ad09-42a7-9623-453c63de4c00, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 03/24] gnu: python-carbon: Update to 1.1.10. 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Date: Sun, 9 Mar 2025 23:11:12 +0100 Message-ID: <20250309221153.334-4-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250309221153.334-1-ngraves@ngraves.fr> References: <20250309221153.334-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 1311673393233847010 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudejiedvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfgggtgfesthekredtredtjeenucfhrhhomheppfhitgholhgrshcuifhrrghvvghsuceonhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrqeenucggtffrrghtthgvrhhnpedvffehgeekhfekgffgleehffetiefggeeitdduteekfffhkeehveejfeejledtieenucffohhmrghinhepghhithhhuhgsrdgtohhmnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutdejnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehjeehmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=wMRE1Fc/pApLWEuVB1/QIAePlLZP9LiZVmvqASusjCY=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741558324; v=1; b=vGbIaMtlmrkfTjDsitXzZDhIbvxPAVOg4gCKOQXSPDPdU5G4r8T1YYoflsAYf1SXkVic//4O W7Ef2kgTKOa1WBMyd61TEvm+x+2geF1ZNjudJA1Gr3DCsuC3iITrVEpAQ++PH/XNo78lNH4/Wxe L/Z257YI0KKMPZJhW+w7UxUKpoXmfxq9JsQl2WvpvRo/BJwARK95myQhcQ7unp89DzPNTKBtv0F Jf7BVkvd0aJp7yVUDk+s2ZAuq3+74WgSZAGpJmN2UcqFltZccWO1mNak03c7YMMgw22RoGrKNIv 61gQ/0Z7LTTXZfx2z7Fc3lyyWUyqMxOXT14pov0mRzE1A== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/monitoring.scm (python-rrdtool): New variable. --- gnu/packages/monitoring.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm index 01b554d9aa..b75500fc08 100644 --- a/gnu/packages/monitoring.scm +++ b/gnu/packages/monitoring.scm @@ -14,6 +14,7 @@ ;;; Copyright © 2022 Hartmut Goebel ;;; Copyright © 2022 ( ;;; Copyright © 2022 Mathieu Laparie +;;; Copyright © 2025 Nicolas Graves ;;; ;;; This file is part of GNU Guix. ;;; @@ -839,6 +840,25 @@ (define-public pw @end itemize") (license license:bsd-2))) +(define-public python-rrdtool + (package + (name "python-rrdtool") + (version "0.1.16") + (source + (origin + (method url-fetch) + (uri (pypi-uri "rrdtool" version)) + (sha256 + (base32 "0l8lbarzfwbwnq9jm9gv4mmrxgjlb9hbz27sa8b703qa7s5zy2jz")))) + (build-system pyproject-build-system) + (arguments (list #:tests? #f)) ; No tests in pypi archive + (inputs (list rrdtool)) + (native-inputs (list python-setuptools python-wheel)) + (home-page "https://github.com/commx/python-rrdtool") + (synopsis "Python bindings for rrdtool") + (description "This package provides Python bindings for rrdtool.") + (license license:lgpl2.1))) + (define-public python-statsd (package (name "python-statsd") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:17 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:18 +0000 Received: from localhost ([127.0.0.1]:34763 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOsb-0000Uv-Ap for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:17 -0400 Received: from 13.mo583.mail-out.ovh.net ([87.98.182.191]:56405) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsR-0000TT-ET for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:09 -0400 Received: from director6.ghost.mail-out.ovh.net (unknown [10.109.148.116]) by mo583.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQF5SPdz1T16 for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:05 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-klglq (unknown [10.108.42.28]) by director6.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 8D0B61FDC0; Sun, 9 Mar 2025 22:12:05 +0000 (UTC) Received: from ngraves.fr ([37.59.142.98]) by ghost-submission-5b5ff79f4f-klglq with ESMTPSA id CUPxDDUSzmdkkAEA7vU0lw (envelope-from ); Sun, 09 Mar 2025 22:12:05 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-98R00205f6b5e1-0f95-4a7c-a0f6-84a532f88097, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 05/24] gnu: python-h2: Fix test-flags. Date: Sun, 9 Mar 2025 23:11:13 +0100 Message-ID: <20250309221153.334-5-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250309221153.334-1-ngraves@ngraves.fr> References: <20250309221153.334-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 1311954866607284962 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudejiedvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrdelkeenucevlhhushhtvghrufhiiigvpedunecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheekfegmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=xQRgEjSW2xWvYaoyAzEURgSSVTlhHit+rDSzlN7Cl+8=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741558325; v=1; b=O5MmDJ0mhhq50KHrIp81aaL+LdZ+3v5d4/eLyhT9sGmwjfCc9WqQ7GIQh4cOR9xumPw9J3Z7 bHyKT/Wnl14aQ1fIjaDuk4NAfZ7nk8Mw2nqV7x9pN9GCmoZtMqjYNrwsFBlLsRUwyYXy/VyX0W+ oZO1CyH1Cug9dRdT0xk9xqfVFERs8uasktUAJzoFcTOkBoUf7yLOVx71gQGNA9Z5cZ+ealWMc6n BaALIG+L6khZ/GGFF6v0pxBRLb568+/67DX4iFGzA9k2ZX1SHdiWuLwjX+/q56FoUdTjc8x2LZs AGA5bPQZw+Z8BsC3F/cq4NxhzXtxwDpixyLQyn2up6+OQ== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-web.scm (python-h2)[arguments]{test-flags}: Fix quoting. --- gnu/packages/python-web.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 4765ab2358..2438fba134 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -2483,9 +2483,9 @@ (define-public python-h2 (string-join (list "not test_remotesettingschanged_repr" ;; This test exceededs the Hypothesis deadline. - ,@(if (target-riscv64?) - `("test_changing_max_frame_size") - '()) + #$@(if (target-riscv64?) + #~("test_changing_max_frame_size") + #~()) "test_streamreset_repr" "test_settingsacknowledged_repr" "test_connectionterminated_repr[None-None]" -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:18 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:18 +0000 Received: from localhost ([127.0.0.1]:34765 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOsb-0000V4-Q4 for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:18 -0400 Received: from 18.mo584.mail-out.ovh.net ([188.165.54.143]:57905) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsT-0000TY-0W for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:10 -0400 Received: from director8.ghost.mail-out.ovh.net (unknown [10.108.25.23]) by mo584.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQH2B0Vz1SyQ for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:07 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-cbs7c (unknown [10.110.168.217]) by director8.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 107FC1FE8C; Sun, 9 Mar 2025 22:12:06 +0000 (UTC) Received: from ngraves.fr ([37.59.142.102]) by ghost-submission-5b5ff79f4f-cbs7c with ESMTPSA id iQ43MTYSzmdgyRAAYFUH/w (envelope-from ); Sun, 09 Mar 2025 22:12:06 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-102R004b29bb106-8a65-4c03-a3c5-141adf692107, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 06/24] gnu: graphite-web: Update to 1.1.10-2.49c28e2. Date: Sun, 9 Mar 2025 23:11:14 +0100 Message-ID: <20250309221153.334-6-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250309221153.334-1-ngraves@ngraves.fr> References: <20250309221153.334-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 1312517819807752930 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudejiedvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnheptdegffefuddutdeuiedujeeiveefjefhjeeugeevudduleffjeeiueehtdelveejnecuffhomhgrihhnpehgrhgrphhhihhtvggrphhprdhorhhgpdhgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddruddtvdenucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheekgegmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=g4QVj1INg+8sLxsWuWBB5nJMddPm5VfBS6Z40M2svLk=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741558327; v=1; b=S3ALarpIeAEw7Q6+hu4cQC53j6zVscBRZ1uSmAA7eG9/UMeX4QHSIZXkwLi+p71LrwSARRY4 0Fuy+p0KkeExXRmSTZP2lEwqGny9U79pmhbsfoRMIpYwlAqHbZhjQSzNH77UZNp2lOBoW9IADmX EIrPB4qmCZWFlsr7bok7L8440F1+jIkX89/fkUV/jMA0pM5VkSX2+MA4xxyxHj0vMKBY95v/S/u l9Oy/YCIwAaOhRdbCKq7Pxve+X9bLaNXUUECrsSSrwoOny//geCbrYItlSGRlZgIp2x9jQ1hnxi b+4PqOL2qixclPM0M8vWLQ2edJf0Ces4qaisPvDSj3luQ== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/monitoring.scm (graphite-web): Update to 1.1.10-2.49c28e2. --- gnu/packages/monitoring.scm | 99 +++++++++++++++++++++++-------------- 1 file changed, 62 insertions(+), 37 deletions(-) diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm index b75500fc08..1009c32783 100644 --- a/gnu/packages/monitoring.scm +++ b/gnu/packages/monitoring.scm @@ -69,6 +69,7 @@ (define-module (gnu packages monitoring) #:use-module (gnu packages prometheus) #:use-module (gnu packages python) #:use-module (gnu packages python-build) + #:use-module (gnu packages python-science) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (gnu packages rrdtool) @@ -461,45 +462,69 @@ (define-public python-carbon (license license:asl2.0))) (define-public graphite-web - (package - (name "graphite-web") - (version "1.1.10") - (source - (origin - (method url-fetch) - (uri (pypi-uri "graphite-web" version)) - (sha256 - (base32 - "0nnk3kwn0b6bq9xnmv9bac6hpcbdgpgwf283c1ck5nm80panh61z")))) - (build-system python-build-system) - (arguments - `(#:tests? #f ;XXX: not in PyPI release & requires database - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'relax-requirements - (lambda _ - (substitute* "setup.py" - ;; Allow newer versions of django-tagging. - (("django-tagging==") "django-tagging>=") - ;; And Django. - (("Django>=1\\.8,<3\\.1") "Django>=1.8,<4")))) - ;; Don't install to /opt - (add-after 'unpack 'do-not-install-to-/opt - (lambda _ (setenv "GRAPHITE_NO_PREFIX" "1") #t))))) - (propagated-inputs - (list python-cairocffi - python-django-3.2 - python-django-tagging - python-pyparsing - python-pytz - python-six - python-urllib3)) - (home-page "https://graphiteapp.org/") - (synopsis "Scalable realtime graphing system") - (description "Graphite is a scalable real-time graphing system that does + (let ((commit "49c28e2015d605ad9ec93524f7076dd924a4731a") + (revision "2")) + (package + (name "graphite-web") + (version (git-version "1.1.10" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/graphite-project/graphite-web") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0bcc6jh7gyp8f54dzy4zza1z46gk3530r952pi86irf834z106sg")))) + (build-system pyproject-build-system) + (arguments + `(#:tests? #f ;XXX: Requires database, unable to run now + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "setup.py" + ;; Allow newer versions of django-tagging. + (("django-tagging==") "django-tagging>=") + ;; And Django. + (("Django>=3\\.2,<4") "Django>=4,<5")))) + ;; Don't install to /opt + (add-after 'unpack 'do-not-install-to-/opt + (lambda _ (setenv "GRAPHITE_NO_PREFIX" "1"))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (mkdir-p "storage/log/webapp") + (with-directory-excursion "webapp" + (invoke "./manage.py" "test" "--pythonpath=." "tests" + "-k" (string-join + (list + "not test_dashboard_save_temporary_xss_key" + "test_dashboard_save_temporary_xss_name") + " and not "))))))))) + (native-inputs + (list python-carbon + python-mock + python-pytest + python-rrdtool + python-setuptools + python-tzdata + python-wheel + python-whisper)) + (propagated-inputs + (list python-cairocffi + python-django-4.2 + python-django-tagging + python-pyparsing + python-pytz + python-six + python-urllib3)) + (home-page "https://graphiteapp.org/") + (synopsis "Scalable realtime graphing system") + (description "Graphite is a scalable real-time graphing system that does two things: store numeric time-series data, and render graphs of this data on demand.") - (license license:asl2.0))) + (license license:asl2.0)))) (define-public python-prometheus-client (package -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:29 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:29 +0000 Received: from localhost ([127.0.0.1]:34779 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOsm-0000WB-VC for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:29 -0400 Received: from 3.mo575.mail-out.ovh.net ([46.105.58.60]:50883) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsV-0000Tp-Bv for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:12 -0400 Received: from director2.ghost.mail-out.ovh.net (unknown [10.108.2.210]) by mo575.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQK65Zzz1nyc for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:09 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-8kt6j (unknown [10.110.178.25]) by director2.ghost.mail-out.ovh.net (Postfix) with ESMTPS id AAB641FD7D; Sun, 9 Mar 2025 22:12:09 +0000 (UTC) Received: from ngraves.fr ([37.59.142.106]) by ghost-submission-5b5ff79f4f-8kt6j with ESMTPSA id xAxbIzkSzmcDVAAAA5HuIg (envelope-from ); Sun, 09 Mar 2025 22:12:09 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-106R00655d49e96-de74-4919-b65c-3c87f0675fcd, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 08/24] gnu: python-cfn-lint: Update to 1.28.0. Date: Sun, 9 Mar 2025 23:11:16 +0100 Message-ID: <20250309221153.334-8-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250309221153.334-1-ngraves@ngraves.fr> References: <20250309221153.334-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 1313080768180576994 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudejiedvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutdeinecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehjeehmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=wZ3cqs6f9kwpaAl1fph2tDH1+37AFn83Nn7yMVXiJAY=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741558330; v=1; b=lhdcO99XHNFZXmyJaReyU6wceCA4tB7EWh6Kt/GkemvO3w1+kV84oNwh8L/S/KCvgrzltGrp dDzrWtHlGogC5p/OOsufVocDOez7XMqR3nr3qB804O/ts0de1LFRE19Agx4cpA7DW8kCE41qIfv gqd1VCNlJ0w8kmByPBtJCUQapCnD7M97Xyv6f2ziuTcoWypIVgD4y58gxJl8I7b45zNmyQ5Tog1 DNf5GouPpDjpzDcSd1R7cPegQE1C1lhU0uT4TOs/dpFXjSDB7D7ajwA7Yn3sR+v8+Yss8qsy/P3 nvDAZ5mhpT9iAvHjq5YpCazVaJmhh5Vh9Zl7iZYJGHKdw== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-web.scm (python-cfn-lint): Update to 1.28.0. --- gnu/packages/python-web.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 2438fba134..77a4e5c8f1 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -1659,7 +1659,7 @@ (define-public python-cbor2 (define-public python-cfn-lint (package (name "python-cfn-lint") - (version "1.22.1") + (version "1.28.0") (source (origin (method git-fetch) (uri (git-reference @@ -1668,7 +1668,7 @@ (define-public python-cfn-lint (file-name (git-file-name name version)) (sha256 (base32 - "1zz121r9yv1irwdbk07s7958fh43h3r3q39qcj0gv4kpgb0vdf32")))) + "0n1v05516s0zy64v1a7f7pj5h9lscvbkkwnlgmys7g8lydlgf0v4")))) (build-system pyproject-build-system) (arguments (list -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:32 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:32 +0000 Received: from localhost ([127.0.0.1]:34787 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOsq-0000Wc-CF for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:32 -0400 Received: from 9.mo575.mail-out.ovh.net ([46.105.78.111]:52535) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsW-0000Tw-WF for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:13 -0400 Received: from director8.ghost.mail-out.ovh.net (unknown [10.108.2.23]) by mo575.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQM16dXz1pp1 for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:11 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-57s8t (unknown [10.110.96.237]) by director8.ghost.mail-out.ovh.net (Postfix) with ESMTPS id E49A21FD1D; Sun, 9 Mar 2025 22:12:10 +0000 (UTC) Received: from ngraves.fr ([37.59.142.108]) by ghost-submission-5b5ff79f4f-57s8t with ESMTPSA id fLXELjoSzmdHQw4ApWpLOw (envelope-from ); Sun, 09 Mar 2025 22:12:10 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-108S002b8224210-1914-4f4d-832e-bee7ff930773, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 09/24] gnu: patchwork: Update to 3.2.1. Date: Sun, 9 Mar 2025 23:11:17 +0100 Message-ID: <20250309221153.334-9-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250309221153.334-1-ngraves@ngraves.fr> References: <20250309221153.334-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 1313643716620640994 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudejiedvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutdeknecuvehluhhsthgvrhfuihiivgepudenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehjeehmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=RCnreOu/z7ZbXdD2GVsyiDvN4V7fZy4wOqFMI8XnqDM=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741558331; v=1; b=w4HoPk4h5l7QXuoM21Q0+j27Tbj9N5WT6MKx4c/ZVW1IOKkQpg72KeWwjcgyTYlihUQSckzS fHrbz4J53/XeyaZUn5ob4fNvTPLnLn5UY/kjGdJ6KeWNCsK+NzOCUDFJ9Imk6vqoMQFRwdlP6fy EgjISCxJjEqF2Lh8jyYXufC6sldQa7stAOEQbhs1PlMKN7Awgh2hA+2DDTS2QFmxqdfpbpJUjJk EiXr42QVHM0CdE0bfwldwt/JyyGwwnquFd8/Je99tz6wpuh+srG5lv1VWo6RHb3Xz4Tz3YnLNqN yc8HTl3OIWXP9Tt0RXxx9lYX5puJ25iCw0gpX4tsmWcgQ== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/patchutils.scm (patchwork): Update to 3.2.1. --- gnu/packages/patchutils.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/patchutils.scm b/gnu/packages/patchutils.scm index 3cd3507b07..b2b84046b4 100644 --- a/gnu/packages/patchutils.scm +++ b/gnu/packages/patchutils.scm @@ -370,7 +370,7 @@ (define-public meld (define-public patchwork (package (name "patchwork") - (version "3.1.1") + (version "3.2.1") (source (origin (method git-fetch) (uri (git-reference @@ -379,7 +379,7 @@ (define-public patchwork (file-name (git-file-name name version)) (sha256 (base32 - "0is9d4gf93jcbyshyj2k3kjyrjnvimrm6bai6dbcx630md222j5w")))) + "04ikawdyhjwspxvhazbp5f5vym672y0jcw8rd2m75h9ipcpnyxim")))) (build-system python-build-system) (arguments `(;; TODO: Tests require a running database @@ -503,7 +503,7 @@ (define pythonpath (inputs (list python-wrapper)) (propagated-inputs - (list python-django-3.2 + (list python-django ;; TODO: Make this configurable python-psycopg2 python-mysqlclient -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:33 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:33 +0000 Received: from localhost ([127.0.0.1]:34791 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOsr-0000Wm-D3 for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:33 -0400 Received: from 6.mo575.mail-out.ovh.net ([46.105.63.100]:56219) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsX-0000U8-78 for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:13 -0400 Received: from director8.ghost.mail-out.ovh.net (unknown [10.108.2.23]) by mo575.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQN1thtz1pmV for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:12 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-82vbn (unknown [10.110.96.65]) by director8.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 2563D1FD9F; Sun, 9 Mar 2025 22:12:12 +0000 (UTC) Received: from ngraves.fr ([37.59.142.95]) by ghost-submission-5b5ff79f4f-82vbn with ESMTPSA id JISwAjwSzmfocR4AJvcgiQ (envelope-from ); Sun, 09 Mar 2025 22:12:12 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-95G00132bd5006-f3b5-4f6f-96d4-60e8f0d0da63, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 10/24] gnu: Remove python-django-3.2. Date: Sun, 9 Mar 2025 23:11:18 +0100 Message-ID: <20250309221153.334-10-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250309221153.334-1-ngraves@ngraves.fr> References: <20250309221153.334-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 1313925192054334178 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudejiedvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrdelheenucevlhhushhtvghrufhiiigvpedunecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheejhegmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=To/s2b8m1fi88PjP78tZwz34yOBk4LlIrTxg0tdSnYk=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741558332; v=1; b=CDwBlDfhSYiZvLXamA53k0ZnkH0UC8wtzroKIRT9wt9eo6LgAOsLBM6IcC1wOqNUJGYCf5MD E5jJMbPAvtV5CE45YBFpi9+TEUaDuxSvoM/UeuEw0cul9EY0kQO0bKZVz6pz0bQLfRwA03HEn2L VZhEbKiLdBBSHtYMaZTVunkf2pc+o6mYQATxo5duMFTba5xI+bXPC6BmvOUFn3vhF/elezDV2Xq ilHz4TAjXDt3kaRpqBqfKYYWtXwui5qbc+kSt6wTQskYG71YPcrQA87iiJg3J8WhMnSGRNErA2q cCQA13v/6uWACDUbAt3WGigkUAOEj0wBZ4Ew1dym+9bzw== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/django.scm (python-django-3.2): Delete variable. --- gnu/packages/django.scm | 20 ++------------------ 1 file changed, 2 insertions(+), 18 deletions(-) diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm index cb9df0d2df..20522231ac 100644 --- a/gnu/packages/django.scm +++ b/gnu/packages/django.scm @@ -148,26 +148,10 @@ (define-public python-django-4.2 ;; This CVE seems fixed since 4.2.1. (lint-hidden-cve . ("CVE-2023-31047")))))) -(define-public python-django-3.2 - (package - (inherit python-django-4.2) - (version "3.2.21") - (source (origin - (method url-fetch) - (uri (pypi-uri "Django" version)) - (sha256 - (base32 - "0g3zm2glh76g31q06g6fwkwvkrphjj3mnap5sgk1hx3v9r44rpm5")))) - (native-search-paths '()) ;no need for TZDIR - (propagated-inputs - (modify-inputs (package-propagated-inputs python-django-4.2) - ;; Django 4.0 deprecated pytz in favor of Pythons built-in zoneinfo. - (append python-pytz))))) - ;; archivebox requires django>=3.1.3,<3.2 (define-public python-django-3.1.14 (package - (inherit python-django-3.2) + (inherit python-django-4.2) (version "3.1.14") (source (origin (method url-fetch) @@ -176,7 +160,7 @@ (define-public python-django-3.1.14 (base32 "0ix3v2wlnplv78zxjrlw8z3hiap2d5mxvk0ny2fc65526shsb93j")))) (propagated-inputs - (modify-inputs (package-propagated-inputs python-django-3.2) + (modify-inputs (package-propagated-inputs python-django-4.2) ;; Django 4.0 deprecated pytz in favor of Pythons built-in zoneinfo. (append python-pytz))))) -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:34 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:34 +0000 Received: from localhost ([127.0.0.1]:34793 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOsr-0000Ws-O0 for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:34 -0400 Received: from 20.mo582.mail-out.ovh.net ([178.32.124.17]:45309) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsU-0000Ti-U1 for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:12 -0400 Received: from director7.ghost.mail-out.ovh.net (unknown [10.109.140.75]) by mo582.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQJ4brsz1Vbr for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:08 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-5gmvt (unknown [10.110.96.35]) by director7.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 513441FD20; Sun, 9 Mar 2025 22:12:08 +0000 (UTC) Received: from ngraves.fr ([37.59.142.107]) by ghost-submission-5b5ff79f4f-5gmvt with ESMTPSA id MgCHCzgSzmel+yAAYMa1JQ (envelope-from ); Sun, 09 Mar 2025 22:12:08 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-107S00178ab90c4-c405-4051-8af9-61cdf301dfed, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 07/24] gnu: python-nptyping: Ignore failing test. 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"--ignore=tests/test_mypy.py" -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:34 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:34 +0000 Received: from localhost ([127.0.0.1]:34795 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOss-0000X0-4O for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:34 -0400 Received: from 1.mo581.mail-out.ovh.net ([178.33.45.51]:55473) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsZ-0000UR-95 for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:16 -0400 Received: from director11.ghost.mail-out.ovh.net (unknown [10.108.17.189]) by mo581.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQP54L2z1K4m for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:13 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-8c6vl (unknown [10.110.188.54]) by director11.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 7A17F1FE3B; Sun, 9 Mar 2025 22:12:13 +0000 (UTC) Received: from ngraves.fr ([37.59.142.110]) by ghost-submission-5b5ff79f4f-8c6vl with ESMTPSA id pcinFD0SzmeinAAA0jqztA (envelope-from ); Sun, 09 Mar 2025 22:12:13 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-110S0049211a05c-c53c-424f-a088-708e19a1f20b, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 11/24] gnu: python-uqbar: Update to 7.0.0. 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[propagated-inputs]: Replace python-sphinx-5 by python-sphinx, recursively. --- gnu/packages/graphviz.scm | 11 +++-------- 1 file changed, 3 insertions(+), 8 deletions(-) diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm index defd53df73..c23369acc4 100644 --- a/gnu/packages/graphviz.scm +++ b/gnu/packages/graphviz.scm @@ -208,7 +208,7 @@ (define-public python-pygraphviz (define-public python-uqbar (package (name "python-uqbar") - (version "0.6.9") + (version "7.0.0") (source (origin (method git-fetch) @@ -217,7 +217,7 @@ (define-public python-uqbar (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "037qj3rymm6xzdpklddfhmfp2p1bq9fi3jrvxj6gmharphd5z869")))) + (base32 "0qa32d2z7bg3h26r18dv55g9lghw59wln7rkcciavyyjh553q430")))) (build-system pyproject-build-system) (arguments ; XXX: Disable failing tests. (list #:test-flags '(list "tests" "-k" "not test_find_executable \ @@ -232,12 +232,7 @@ (define-public python-uqbar python-setuptools python-wheel)) (propagated-inputs - (list python-black python-sphinx-5 python-unidecode - (package/inherit python-sphinx-rtd-theme - (propagated-inputs - (modify-inputs - (package-propagated-inputs python-sphinx-rtd-theme) - (replace "python-sphinx" python-sphinx-5)))))) + (list python-black python-sphinx python-unidecode python-sphinx-rtd-theme)) (home-page "https://github.com/josiah-wolf-oberholtzer/uqbar") (synopsis "Tools for building documentation with Sphinx, Graphviz and LaTeX") (description -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:34 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:35 +0000 Received: from localhost ([127.0.0.1]:34799 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOss-0000XC-HC for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:34 -0400 Received: from 17.mo561.mail-out.ovh.net ([87.98.178.58]:37415) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsa-0000UU-Vd for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:18 -0400 Received: from director9.ghost.mail-out.ovh.net (unknown [10.109.176.101]) by mo561.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQR1htGz1M3n for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:15 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-w6wtx (unknown [10.108.54.69]) by director9.ghost.mail-out.ovh.net (Postfix) with ESMTPS id C68261FE82; Sun, 9 Mar 2025 22:12:14 +0000 (UTC) Received: from ngraves.fr ([37.59.142.113]) by ghost-submission-5b5ff79f4f-w6wtx with ESMTPSA id Ip7NHz4SzmfXYwEAYM+2vw (envelope-from ); Sun, 09 Mar 2025 22:12:14 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-113S00767860188-df6a-41e9-b193-0d9ba346d518, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 12/24] gnu: Remove python-sphinx-autodoc-typehints-5. Date: Sun, 9 Mar 2025 23:11:20 +0100 Message-ID: <20250309221153.334-12-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250309221153.334-1-ngraves@ngraves.fr> References: <20250309221153.334-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 1314769618996290274 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudejieduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrdduudefnecuvehluhhsthgvrhfuihiivgepvdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehiedumgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=oYiA+hiHCHZcsIT4arSkBUWw/Dz93rI3iiQnu+ebbaA=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741558335; v=1; b=nAcvDFbRsKZfeGY9SQtuxERcTL0Nd3/MlJy75lCeH6O7Dy9gjwctlvt+eaMy/K4qEsAm1S+e RalC7jHBwMh9a014RDfgY/zuhd4W5fyBkJYQohEOxW/l08MhVaKlzm+RVM71bNB/y3pHIa6UaZq 4KmF7LtJVn4qSPlU5+9A8uveSDiHFLaIW7xnsqeOyXFTarhdMny6fzjtZgVPPEcR7Ao5+awJ42c rVLNdDHG2KBzA7T7pbQj7QYMusGSYyXWmsssZ81nFfvAnbM8BRqpYh8p2gTBYnuKi7g6kcjiOFY 5lIRoJ4tkKLiI+imwaE2BRbYTwKCv+Nys9QN7II5ggzgg== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/sphinx.scm (python-sphinx-autodoc-typehints-5): Delete variable. --- gnu/packages/sphinx.scm | 7 ------- 1 file changed, 7 deletions(-) diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm index 6847592a99..5f06cb04f5 100644 --- a/gnu/packages/sphinx.scm +++ b/gnu/packages/sphinx.scm @@ -1234,13 +1234,6 @@ (define-public python-sphinx-autodoc-typehints documenting acceptable argument types and return value types of functions.") (license license:expat))) -(define-public python-sphinx-autodoc-typehints-5 - (package/inherit python-sphinx-autodoc-typehints - (propagated-inputs - (modify-inputs - (package-propagated-inputs python-sphinx-autodoc-typehints) - (replace "python-sphinx" python-sphinx-5))))) - (define-public python-sphinx-pytest (package (name "python-sphinx-pytest") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:35 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:35 +0000 Received: from localhost ([127.0.0.1]:34801 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOss-0000XH-VY for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:35 -0400 Received: from 12.mo581.mail-out.ovh.net ([178.33.107.167]:33663) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsc-0000Us-DF for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:19 -0400 Received: from director11.ghost.mail-out.ovh.net (unknown [10.108.17.189]) by mo581.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQS54QSz1J2m for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:16 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-99p9q (unknown [10.111.182.250]) by director11.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 83B3D1FE3B; Sun, 9 Mar 2025 22:12:16 +0000 (UTC) Received: from ngraves.fr ([37.59.142.102]) by ghost-submission-5b5ff79f4f-99p9q with ESMTPSA id 8bevEUASzmc5jAAAsKBlDQ (envelope-from ); Sun, 09 Mar 2025 22:12:16 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-102R00488134b6b-83c4-4c70-8f7b-3b4db592e5cd, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 13/24] gnu: python-sphinx-panels: Update input to python-sphinx-5. Date: Sun, 9 Mar 2025 23:11:21 +0100 Message-ID: <20250309221153.334-13-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250309221153.334-1-ngraves@ngraves.fr> References: <20250309221153.334-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 1315051095114703586 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudejiedvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutddvnecuvehluhhsthgvrhfuihiivgepudenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehkedumgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=TPlfwm24WFV5hvRFKmvt9HJIRZliQP4ahrDPBwk4xbc=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741558336; v=1; b=1qrJQD4i6n9msQ1NpLtYyMWcOhWxbhX302O+5DxPQLifCSpBlDubIEMr8MZ/zHdB1YrS6pvN GGHr45tMmOqbPsb6dXjhW+jwdWEbsYUo2ePRwA8N+T2uLs5wDubhx/Rdx+xYYIPuimzTtl2L0KO adFY24iSQnah1QcJQI8IBgHODtfdYWV46+SwY3RwAz7oeh6kcFfUOo2+IOgFhwbfJ4whDUNA+aL 9xnVaBltbFXIdqGxVkkePyf+quMfRiSMeacu5d8wWEY4l3reWOW4kfy20iRDNWWjn2qFFIvR1UR X0kARWBxOeGaIEGnw2rC7eLAHbIXKSPhCyMjqPFPNp4Uw== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/sphinx.scm (python-sphinx-panels): [arguments]{phases}: Add 'loosen-requirements phase. [propagated-inputs]: Replace python-sphinx-4 by python-sphinx-5. --- gnu/packages/sphinx.scm | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm index 5f06cb04f5..024bfe986a 100644 --- a/gnu/packages/sphinx.scm +++ b/gnu/packages/sphinx.scm @@ -608,7 +608,15 @@ (define-public python-sphinx-panels (sha256 (base32 "1ivqz6yv96a2jp59kylg1gbkrmzq6zwilppz3ij0zrkjn25zb97k")))) (build-system pyproject-build-system) - (propagated-inputs (list python-docutils-0.15 python-sphinx-4)) + (arguments + (list #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'loosen-requirements + (lambda _ + (substitute* "setup.py" + (("sphinx>=2,<5") + "sphinx>=2,<6"))))))) + (propagated-inputs (list python-docutils-0.15 python-sphinx-5)) (native-inputs (list python-pytest python-pytest-regressions -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:36 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:36 +0000 Received: from localhost ([127.0.0.1]:34803 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOst-0000XY-NX for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:36 -0400 Received: from 20.mo582.mail-out.ovh.net ([178.32.124.17]:33179) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOse-0000VP-2Z for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:20 -0400 Received: from director8.ghost.mail-out.ovh.net (unknown [10.108.25.23]) by mo582.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQW0399z1Vbm for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:19 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-48h5b (unknown [10.110.164.113]) by director8.ghost.mail-out.ovh.net (Postfix) with ESMTPS id BCBAA1FD1D; Sun, 9 Mar 2025 22:12:18 +0000 (UTC) Received: from ngraves.fr ([37.59.142.114]) by ghost-submission-5b5ff79f4f-48h5b with ESMTPSA id lPnaJkISzmeQcREAzjJ9yg (envelope-from ); Sun, 09 Mar 2025 22:12:18 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-114S0084bc35057-6248-4315-9183-2579c44d20cd, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 14/24] gnu: python-numpy-documentation: Update python-sphinx native-input. Date: Sun, 9 Mar 2025 23:11:22 +0100 Message-ID: <20250309221153.334-14-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250309221153.334-1-ngraves@ngraves.fr> References: <20250309221153.334-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 1315614043050402530 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudejieduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnheptddtgefhteeikeehffeuueefffelvefgueffteffjeefhedvjeeihedtjedvteevnecuffhomhgrihhnpehnuhhmphihrdhorhhgnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrdduudegnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehkedvmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=4YTWpvZ5s1O1wGFO7oUiGM3oi9yeZmF1Xvy96WdGT9g=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741558339; v=1; b=owjvEEizO0TI3+2O8kL4BWJBjn/vgODXwK7dJYiZeDSuCssQ4ce3Ka0wcKW3vImrnNSDWZup bH9EIQZ0znkVRi9h/ps7h4SH/WdFI4BXt6haVhusPDxWk8b0qrA3CuTP77FPUImixOxAmDteLyF ogiMqfuD58FgQaKX8Q/ahNHUmHJXrTyVE4zzOkejy9GBJhpZ22JaPn7aWfWk/Wx7R2MemRMkKia bL9fUUKJiBfj5470zrb+R2p3GhjgAEJIxWJfM0hw3V1otEOTgHWQOJ7wYGf+gE0eVSAiF8to4zC +qiarv+DcoABTdf3gWmwtlN0L2GqaYtRF4TJLR/l2jGeA== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-xyz.scm (python-numpy-documentation): [arguments]{phases}: Add phase 'avoid-external-deps. Adapt phase 'install by removing sphinx.ext.autodoc extension. [native-inputs]: Replace python-sphinx-4 by python-sphinx. Add python-sphinx-design. --- gnu/packages/python-xyz.scm | 14 +++++++++++++- 1 file changed, 13 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index bacfac6c42..6054a88562 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -9684,6 +9684,16 @@ (define-public python-numpy-documentation #:tests? #f ;we're only generating the documentation #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'avoid-external-deps + (lambda _ + ;; XXX: Avoid theme-switcher to avoid sphinx error + ;; TemplateNotFound('theme-switcher.html') + ;; XXX: Avoid version-switcher because it depends on the value + ;; of external https://numpy.org/doc/_static/versions.json + (substitute* "doc/source/conf.py" + (("\ +\"navbar_end\": \\[\"theme-switcher\", \"version-switcher\", ") + "\"navbar_end\": [")))) (add-before 'build 'add-gnu-freefont-to-texmf (lambda _ ;; XXX: The Sphinx-generated tex output specifies the GNU @@ -9729,6 +9739,7 @@ (define-public python-numpy-documentation (("\"contents\"") "'index'") ;; Disable Sphinx extensions that produce broken Texinfo. ((".*'numpydoc'.*") "") + ((".*'sphinx.ext.autodoc'.*") "") ((".*'sphinx.ext.autosummary'.*") "")) (invoke "make" "info" sphinxopts) ;; Install the HTML documentation. @@ -9752,7 +9763,8 @@ (define-public python-numpy-documentation python-pandas python-pydata-sphinx-theme python-scipy ;used by matplotlib - python-sphinx-4 + python-sphinx + python-sphinx-design python-sphinx-panels texinfo (texlive-updmap.cfg -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:36 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:36 +0000 Received: from localhost ([127.0.0.1]:34807 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOsu-0000Xb-6w for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:36 -0400 Received: from 3.mo550.mail-out.ovh.net ([46.105.60.232]:53029) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsh-0000Ve-Jt for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:24 -0400 Received: from director1.ghost.mail-out.ovh.net (unknown [10.108.9.32]) by mo550.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQY2M3xz1YQ4 for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:21 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-6kkj8 (unknown [10.108.42.231]) by director1.ghost.mail-out.ovh.net (Postfix) with ESMTPS id CBFAF1FD37; Sun, 9 Mar 2025 22:12:20 +0000 (UTC) Received: from ngraves.fr ([37.59.142.106]) by ghost-submission-5b5ff79f4f-6kkj8 with ESMTPSA id TjJkHkQSzmcAZQEAVABgmQ (envelope-from ); Sun, 09 Mar 2025 22:12:20 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-106R006caa2be9d-aec7-4a3c-b4f6-2d9c6154ffc4, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 15/24] gnu: Remove python-sphinx-4. Date: Sun, 9 Mar 2025 23:11:23 +0100 Message-ID: <20250309221153.334-15-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250309221153.334-1-ngraves@ngraves.fr> References: <20250309221153.334-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 1316458470166422242 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudejieduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutdeinecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehhedtmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=421svIgi/A0LVJ1D0zlUgSU99X8usSCikfHpZRbD5KQ=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741558341; v=1; b=5s0I6/Ge3LDcUl+hKNKoWNpC5eHBb/Hjup8bB8rWGFhNCscVJHOi2+98wMG4NIs964PcssrH m3lwlVfpTSKw+WRGDNx4GB/918XQGCVSEIpDdJWfRARF1EZhBGF6YGTkuxg4BtcG3lXwd1UCznr QFRSHC2xL4zxPqc/nK5s1dUE4R0Xdvr6f1Tb3DYxSGiTfOYzhFpvXd7Y9w6Xyx/7G5ERl8diWVM nCpzLZaO/2/s3uI7OeCwdclqSMH58m/R/ipmrULkwHZ26ariIbTDD7wq/1dbUZTDGy3Uqe9/jD2 eFIWkfYswxenPdu+iONA05JmiLrHTUkVc00W7nCAMPkGQ== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/sphinx.scm (python-sphinx-4): Delete variable. --- gnu/packages/sphinx.scm | 19 ------------------- 1 file changed, 19 deletions(-) diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm index 024bfe986a..58952049a1 100644 --- a/gnu/packages/sphinx.scm +++ b/gnu/packages/sphinx.scm @@ -267,25 +267,6 @@ (define-public python-sphinx-5 (texlive-updmap.cfg (list texlive-cm-super texlive-tex-gyre)))))) -;; Some packages do not support Sphinx 5 yet. Remove when unused. -(define-public python-sphinx-4 - (package - (inherit python-sphinx-5) - (version "4.5.0") - (source (origin - (method url-fetch) - (uri (pypi-uri "Sphinx" version)) - (sha256 - (base32 - "1rp28jryxwy24y8vpacclqihbizyi6b1s6id86pibvm46ybcmy3v")))) - (propagated-inputs - (modify-inputs (package-propagated-inputs python-sphinx) - (replace "python-docutils" python-docutils-0.15))) - (native-inputs - (modify-inputs (package-native-inputs python-sphinx) - (delete python-flit-core) - (append python-setuptools python-wheel))))) - (define-public python-sphinxcontrib-apidoc (package (name "python-sphinxcontrib-apidoc") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:37 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:37 +0000 Received: from localhost ([127.0.0.1]:34809 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOsu-0000Xo-Mn for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:37 -0400 Received: from 18.mo561.mail-out.ovh.net ([87.98.172.162]:44463) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsi-0000Vg-Gz for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:25 -0400 Received: from director3.ghost.mail-out.ovh.net (unknown [10.109.140.55]) by mo561.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQZ74DMz1Rcy for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:22 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-7z4j4 (unknown [10.110.113.115]) by director3.ghost.mail-out.ovh.net (Postfix) with ESMTPS id B349E1FE91; Sun, 9 Mar 2025 22:12:22 +0000 (UTC) Received: from ngraves.fr ([37.59.142.111]) by ghost-submission-5b5ff79f4f-7z4j4 with ESMTPSA id OdJgHEYSzmfwmQAARZE3+w (envelope-from ); Sun, 09 Mar 2025 22:12:22 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-111S005f42885b1-c812-404e-a656-108681841698, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 16/24] gnu: Remove python-anyjson. Date: Sun, 9 Mar 2025 23:11:24 +0100 Message-ID: <20250309221153.334-16-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250309221153.334-1-ngraves@ngraves.fr> References: <20250309221153.334-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 1316739942276719330 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudejieduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepteffleejueejhffgtdeuhfekleehkeefuedvffetjefhudeitddvhfdvvefgheejnecuffhomhgrihhnpegsihhtsghutghkvghtrdhorhhgnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrdduuddunecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehiedumgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=xJidJNXup358/Nd78QiVaFZvKu/Md4pn5MT9vx3LZN4=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741558343; v=1; b=zhGDlsdsfztokgJSxR2PphDO/Wih6dj4i8kUxUIBBMEx+b/4A5h9KUWU2v+wfCA5JUI9+CVz 6Ob5+5lZ+uPjpWAgJtdmdHtM5QkAwKOZytNcgZskV9vrl6LTJfGnRJ10/2cHZwnMEz+duDcmiiU 1h1N0NDQw4sHgw243XU2ryJ8juHBnRS0TEM+4feLbuiM2c9+GL25f5+YwFQ3ZixejK++nJwWmAE SGXmlcBeegBfasIjXQODvgZa0FlIB2xziqzefUaBqkCW74Rq4f7yhwhgPxg41IV7LlmSFObamEb 7C7DniaMAkWxHwvZ0uqQPx4p/wY2OemgpXAW4UhZMowYg== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) This package is a leaf package in Guix, is stale for 13 years, and its upstream repository is not even up anymore. * gnu/packages/python-xyz.scm (python-anyjson): Delete variable. --- gnu/packages/python-xyz.scm | 28 ---------------------------- 1 file changed, 28 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 6054a88562..558131fee6 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -21048,34 +21048,6 @@ (define-public python-pyquery fast xml and html manipulation.") (license license:bsd-3))) -(define-public python-anyjson - (package - (name "python-anyjson") - (version "0.3.3") - (source - (origin - (method url-fetch) - (uri (pypi-uri "anyjson" version)) - (sha256 - (base32 - "1fjph4alvcscsl5d4b6qpv1yh31jy05jxi1l0xff7lws7j32v09p")))) - (build-system python-build-system) - (arguments - `(;; We could possibly get tests working, but on Python 3 it's not so easy. - ;; Very strangely, 2to3 is run *during setup.py install* (or bdist, or - ;; whatever) so this transformation needs to be done before the tests - ;; can be run. Maybe we could add a build step to transform beforehand - ;; but it could be annoying/difficult. - #:tests? #f)) - (native-inputs (list python-setuptools-57)) ;for use_2to3 support - (home-page "https://bitbucket.org/runeh/anyjson/") - (synopsis - "Wraps best available JSON implementation in a common interface") - (description - "Anyjson loads whichever is the fastest JSON module installed -and provides a uniform API regardless of which JSON implementation is used.") - (license license:bsd-3))) - (define-public python-amqp (package (name "python-amqp") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:37 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:37 +0000 Received: from localhost ([127.0.0.1]:34811 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOsv-0000Xw-Ab for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:37 -0400 Received: from 20.mo582.mail-out.ovh.net ([178.32.124.17]:34723) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsj-0000Vn-Am for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:25 -0400 Received: from director5.ghost.mail-out.ovh.net (unknown [10.108.9.32]) by mo582.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQc2lVCz1Qxf for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:24 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-8kt6j (unknown [10.110.164.244]) by director5.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 272011FE41; Sun, 9 Mar 2025 22:12:24 +0000 (UTC) Received: from ngraves.fr ([37.59.142.101]) by ghost-submission-5b5ff79f4f-8kt6j with ESMTPSA id z4UfAkgSzmc7VAAAA5HuIg (envelope-from ); Sun, 09 Mar 2025 22:12:24 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-101G004b67be34e-bf99-4213-89cb-2ed81b40eacc, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 17/24] gnu: Remove python-parameterizedtestcase. Date: Sun, 9 Mar 2025 23:11:25 +0100 Message-ID: <20250309221153.334-17-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250309221153.334-1-ngraves@ngraves.fr> References: <20250309221153.334-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 1317302892544844514 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudejieduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepvdehleeiffehtedvlefhffffjeefgfduhfetkeevheeiteduiedugfekuedtheejnecuffhomhgrihhnpehgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddruddtudenucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheekvdgmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=xKr5LDdrjVR84mbXJj4kOmDjgidzQRVxkNEkMHNT5dU=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741558344; v=1; b=jJYzd5k06EDCH+XVSy+zu4uC67CUvSduvOmzzDS3LFqRHQ1aLhmkyIo/Q2Phxux/CvHH3t8f N2eify7xSy1Rdwwvg5eh0EHLUDIWJHA4Pgd0S/HtIPUfwFyANHAnEZb/fmjTNfDvgvXx/CYMjjo 3mL+oMZsokA1ljJfnItrwEX/MSPKQqSQq19uufhaz5HrLxpPtTKsaPfHbNpl66npSuObvc5gCaM BMFnQKs3L+HN2B2pFgVm+wwrT3pPjvu+vD23XyZUCFkpFkKp+vj0KVYVkvEn6KbvD2g4ZqLswmA OkOcantYmsnsgoU3X5ydlHjZNk8BO1NXXVF95mlD0txig== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) This package is a leaf package in Guix, has been abandonned for 11 years (aside from a License change). * gnu/packages/python-check.scm (python-parameterizedtestcase): Delete variable. --- gnu/packages/python-check.scm | 19 ------------------- 1 file changed, 19 deletions(-) diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm index 1138e287f1..d8fa37b9f6 100644 --- a/gnu/packages/python-check.scm +++ b/gnu/packages/python-check.scm @@ -2925,25 +2925,6 @@ (define-public python-pandas-vet in an opinionated way.") (license license:expat))) -(define-public python-parameterizedtestcase - (package - (name "python-parameterizedtestcase") - (version "0.1.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "parameterizedtestcase" version)) - (sha256 - (base32 "0zhjmsd16xacg4vd7zb75kw8q9khn52wvad634v1bvz7swaivk2c")))) - (build-system python-build-system) - (native-inputs (list python-setuptools-57)) ;for use_2to3 - (home-page - "https://github.com/msabramo/python_unittest_parameterized_test_case") - (synopsis "Parameterized tests for Python's unittest module") - (description "This package provides parameterized tests for Python's -@code{unittest} module taking inspiration from pytest.") - (license license:expat))) - (define-public python-pytest-rerunfailures (package (name "python-pytest-rerunfailures") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:38 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:38 +0000 Received: from localhost ([127.0.0.1]:34813 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOsv-0000Y3-Mm for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:38 -0400 Received: from 8.mo561.mail-out.ovh.net ([87.98.172.249]:50633) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsl-0000W0-A9 for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:28 -0400 Received: from director8.ghost.mail-out.ovh.net (unknown [10.109.139.54]) by mo561.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQd66Xjz1VRs for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:25 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-dkhnb (unknown [10.110.178.91]) by director8.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 8F0381FE8D; Sun, 9 Mar 2025 22:12:25 +0000 (UTC) Received: from ngraves.fr ([37.59.142.106]) by ghost-submission-5b5ff79f4f-dkhnb with ESMTPSA id TWQuGEkSzmfMTiUAFCovjA (envelope-from ); Sun, 09 Mar 2025 22:12:25 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-106R006bff8ee1f-38aa-4c7e-be5c-33825eeea62a, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 18/24] gnu: python-pyvcf: Rename package to python-pyvcf3. 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(python-pyvcf3): New variable, formerly known as "python-pyvcf". --- gnu/packages/bioinformatics.scm | 65 +++++++++++---------------------- 1 file changed, 21 insertions(+), 44 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6f4c5053b6..c593c37d35 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -23715,50 +23715,27 @@ (define-public tombo ;; Some parts may be BSD-3-licensed. (license license:mpl2.0))) -(define-public python-pyvcf - (let ((commit "476169cd457ba0caa6b998b301a4d91e975251d9") - (revision "0")) - (package - (name "python-pyvcf") - (version (git-version "0.6.8" revision commit)) - ;; Use git, because the PyPI tarballs lack test data. - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/jamescasbon/PyVCF.git") - ;; Latest release is not tagged. - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "0qf9lwj7r2hjjp4bd4vc7nayrhblfm4qcqs4dbd43a6p4bj2jv5p")))) - (build-system python-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'patch-sample-script - (lambda _ - ;; Add Python 3 compatibility to this sample script. - (substitute* "scripts/vcf_sample_filter.py" - (("print (.*)\n" _ arg) - (string-append "print(" arg ")\n"))))) - (add-after 'install 'remove-installed-tests - ;; Do not install test files. - (lambda* (#:key inputs outputs #:allow-other-keys) - (delete-file-recursively (string-append - (site-packages inputs outputs) - "/vcf/test"))))))) - (native-inputs - ;; Older setuptools is needed for use_2to3. - (list python-cython python-setuptools-57)) - (propagated-inputs - (list python-pysam python-rpy2)) - (home-page "https://github.com/jamescasbon/PyVCF") - (synopsis "Variant Call Format parser for Python") - (description "This package provides a @acronym{VCF,Variant Call Format} +;; This is a fork of the original unmaintained python-pyvcf. +(define-public python-pyvcf3 + (package + (name "python-pyvcf3") + (version "1.0.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PyVCF3" version)) + (sha256 + (base32 "0783pb2p5qx3vgwksc9b9vxbpdq7ax6znff9wa3h80cpicfdf5jb")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-setuptools)) + (native-inputs (list python-setuptools python-wheel)) + (home-page "https://github.com/dridk/PyVCF3") + (synopsis "Variant Call Format parser for Python") + (description "This package provides a @acronym{VCF,Variant Call Format} parser for Python.") - (license license:expat)))) + (license license:expat))) + +(define-deprecated/public-alias python-pyvcf python-pyvcf3) (define-public nanosv (package @@ -23772,7 +23749,7 @@ (define-public nanosv "1wl2daj0bwrl8fx5xi8j8hfs3mp3vg3qycy66538n032v1qkc6xg")))) (build-system python-build-system) (inputs - (list python-configparser python-pysam python-pyvcf)) + (list python-configparser python-pysam python-pyvcf3)) (home-page "https://github.com/mroosmalen/nanosv") (synopsis "Structural variation detection tool for Oxford Nanopore data") (description "NanoSV is a software package that can be used to identify -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:38 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:38 +0000 Received: from localhost ([127.0.0.1]:34815 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOsw-0000YE-8e for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:38 -0400 Received: from 4.mo576.mail-out.ovh.net ([46.105.42.102]:56939) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsm-0000W3-RV for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:30 -0400 Received: from director10.ghost.mail-out.ovh.net (unknown [10.109.176.103]) by mo576.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQg0yVkz1sYh for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:26 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-82vbn (unknown [10.110.113.134]) by director10.ghost.mail-out.ovh.net (Postfix) with ESMTPS id C168A1FE4D; Sun, 9 Mar 2025 22:12:26 +0000 (UTC) Received: from ngraves.fr ([37.59.142.100]) by ghost-submission-5b5ff79f4f-82vbn with ESMTPSA id 7OczJ0oSzmcYch4AJvcgiQ (envelope-from ); Sun, 09 Mar 2025 22:12:26 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-100R003ef57a46b-0eef-419a-badb-2a8f7c2c93ea, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 19/24] gnu: gdal: Update to 3.10.2. 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[source]: Bundle zlib back, as it's now using a custom fork. [arguments]: Add 'patch-runpath phase and {modules} in order to patch the runpaths of the swig generated python bindings. Improve style. [inputs]: Add gcc:lib, hdf5, librasterlite2, libspatialite. [native-inputs]: Add bison. --- gnu/packages/geo.scm | 66 ++++++++++++++++++++++++++++++-------------- 1 file changed, 45 insertions(+), 21 deletions(-) diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm index 251ef5ced9..7e9b1da2e3 100644 --- a/gnu/packages/geo.scm +++ b/gnu/packages/geo.scm @@ -1408,46 +1408,69 @@ (define-public pdal (define-public gdal (package (name "gdal") - (version "3.6.1") + (version "3.10.2") (source (origin (method url-fetch) (uri (string-append - "http://download.osgeo.org/gdal/" version "/gdal-" - version ".tar.gz")) + "http://download.osgeo.org/gdal/" version "/gdal-" + version ".tar.gz")) (sha256 (base32 - "1qckwnygszxkkq40bf87s3m1sab6jj9jyakdvskh0qf7dq8zjarf")) + "1nmh92vbcrp9qnld98vkxsvaw0mrska06kxxbn7n6kgbh6mhlwfa")) (modules '((guix build utils))) (snippet - `(begin - ;; TODO: frmts contains a lot more bundled code. - (for-each delete-file-recursively - ;; bundled code - '("frmts/png/libpng" - "frmts/gif/giflib" - "frmts/jpeg/libjpeg" - "frmts/jpeg/libjpeg12" - "frmts/gtiff/libtiff" - "frmts/gtiff/libgeotiff" - "frmts/zlib" - "ogr/ogrsf_frmts/geojson/libjson")))))) + `(begin + ;; TODO: frmts contains a lot more bundled code. + (for-each delete-file-recursively + ;; bundled code + '("frmts/png/libpng" + "frmts/gif/giflib" + "frmts/jpeg/libjpeg" + "frmts/jpeg/libjpeg12" + "frmts/gtiff/libtiff" + "frmts/gtiff/libgeotiff" + "ogr/ogrsf_frmts/geojson/libjson")))))) (build-system cmake-build-system) (arguments - `(#:tests? #f - #:configure-flags - (list "-DGDAL_USE_INTERNAL_LIBS=WHEN_NO_EXTERNAL" - "-DGDAL_USE_JPEG12_INTERNAL=OFF"))) + (list + #:tests? #f + #:configure-flags '(list "-DGDAL_USE_INTERNAL_LIBS=WHEN_NO_EXTERNAL" + "-DGDAL_USE_JPEG12_INTERNAL=OFF") + #:modules '((guix build cmake-build-system) + (guix build gremlin) + (guix build utils) + (srfi srfi-26)) + #:phases + #~(modify-phases %standard-phases + (add-before 'strip 'patch-runpath + (lambda* (#:key inputs #:allow-other-keys) + (for-each + (cut set-file-runpath <> + (list (string-append #$output "/lib") + (dirname (search-input-file + inputs "/lib/libgcc_s.so")) + (dirname (search-input-file + inputs "/lib/libc.so.6")))) + (find-files + #$output + (lambda (file stat) + (and (string-suffix? ".so" file) + (string-contains file "site-packages")))))))))) (inputs (list curl expat freexl + `(,gcc "lib") geos giflib + hdf5 json-c libgeotiff libjpeg-turbo libjxl libpng + librasterlite2 + libspatialite libtiff libwebp lz4 @@ -1463,7 +1486,8 @@ (define-public gdal zlib zstd)) (native-inputs - (list pkg-config + (list bison + pkg-config python)) (propagated-inputs (list python-numpy)) -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:39 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:39 +0000 Received: from localhost ([127.0.0.1]:34817 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOsw-0000YM-RN for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:39 -0400 Received: from 3.mo575.mail-out.ovh.net ([46.105.58.60]:45279) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOso-0000WJ-Au for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:30 -0400 Received: from director5.ghost.mail-out.ovh.net (unknown [10.108.9.32]) by mo575.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQj2L2Pz1flF for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:29 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-7dstn (unknown [10.110.168.56]) by director5.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 1F82B1FE41; Sun, 9 Mar 2025 22:12:29 +0000 (UTC) Received: from ngraves.fr ([37.59.142.106]) by ghost-submission-5b5ff79f4f-7dstn with ESMTPSA id cAPLAU0SzmfL8ScA6hIoZg (envelope-from ); Sun, 09 Mar 2025 22:12:29 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-106R0060f815e65-a4aa-4bf8-9b38-04143922bfb1, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 21/24] gnu: sphinx-5: Ignore failing test. Date: Sun, 9 Mar 2025 23:11:29 +0100 Message-ID: <20250309221153.334-21-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250309221153.334-1-ngraves@ngraves.fr> References: <20250309221153.334-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 1318710268225970914 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudejiedvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutdeinecuvehluhhsthgvrhfuihiivgepfeenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehjeehmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=sv5w40SqKTnzcxjyPE8HZFnBiaCFirLwhZCL9EDH1I4=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741558349; v=1; b=FZt6P5x7P4UvBFze6+2KRxbPom606LUIzZ2LIAqSDtR+ynejOgxHPGwQiKoVz/spdJ1uPpmv rnvtqVcfbEYnIGseMAjGiKhcTg4p7o1b3Tuw/6yFEvRXUYrdv607oCuC2obFEQavt1EEhYTxqqG YsMK5pDtVfD9zNwW1Ah7J2z2eS/3I5/GQWz0InoEDFxvXxOmWJ8cNJH6hr06VRT63mmhUoCgCoS 1N9QWIx1XStVUztVEycrPJIS3ZCJuJ+nLaeLdhfwveblKwzZoFC11XS38ZpaswhgS4mFI0UBZ80 vzZXSP+mebQ8xrxX/kApSZIKQXS5H86JnbEYNg3bTx88g== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/sphinx.scm (sphinx-5)[arguments]{test-flags}: Ignore test test_autodoc_default_options (also ignored in sphinx@6). --- gnu/packages/sphinx.scm | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm index 239a2cc780..4b3e598e38 100644 --- a/gnu/packages/sphinx.scm +++ b/gnu/packages/sphinx.scm @@ -197,7 +197,10 @@ (define-public python-sphinx-5 " and not test_viewcode" ;; These fail with pygments 2.10+. They are harmless. " and not test_additional_targets_should_not_be_translated" - " and not test_additional_targets_should_be_translated")) + " and not test_additional_targets_should_be_translated" + ;; As in Sphinx@6: + ;; AssertionError: assert...list of weak references to the object... + " and not test_autodoc_default_options")) #:phases '(modify-phases %standard-phases (add-before 'check 'pre-check -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:39 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:39 +0000 Received: from localhost ([127.0.0.1]:34819 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOsx-0000YP-4W for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:39 -0400 Received: from 19.mo584.mail-out.ovh.net ([87.98.179.66]:48667) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsn-0000W5-U4 for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:31 -0400 Received: from director2.ghost.mail-out.ovh.net (unknown [10.108.9.32]) by mo584.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQh2QLjz1T9s for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:28 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-f6dwx (unknown [10.110.164.150]) by director2.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 1B3C91FE1E; Sun, 9 Mar 2025 22:12:28 +0000 (UTC) Received: from ngraves.fr ([37.59.142.114]) by ghost-submission-5b5ff79f4f-f6dwx with ESMTPSA id di+kOksSzmcYnAAArO8MFQ (envelope-from ); Sun, 09 Mar 2025 22:12:28 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-114S008746343d1-6057-40f0-a7c8-55d1a3409ec4, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 20/24] gnu: python-docutils-0.15: Update to 0.16. 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[native-inputs]: Replace python-setuptools-57 by python-setuptools. * gnu/packages/python-web.scm (awscli)[inputs]: Update accordingly. * gnu/packages/sphinx.scm (python-sphinx-panels)[propagated-inputs]: Update accordingly. --- gnu/packages/python-web.scm | 2 +- gnu/packages/python-xyz.scm | 10 +++++----- gnu/packages/sphinx.scm | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 77a4e5c8f1..42f98df644 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -5165,7 +5165,7 @@ (define-public awscli (list groff-minimal python-botocore python-colorama - python-docutils-0.15 + python-docutils-0.16 python-pyyaml python-rsa python-s3transfer)) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 558131fee6..72906d7b37 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -7835,21 +7835,21 @@ (define-public python-docutils ;; licensed under the PFSL, BSD 2-clause, and GPLv3+ licenses. (license (list license:public-domain license:psfl license:bsd-2 license:gpl3+)))) -;; awscli refuses to be built with docutils < 0.16. -(define-public python-docutils-0.15 +;; awscli refuses to be built with docutils < 0.17. +(define-public python-docutils-0.16 (package (inherit python-docutils) - (version "0.15") + (version "0.16") (source (origin (method url-fetch) (uri (pypi-uri "docutils" version)) (sha256 (base32 - "0ja8q6mdj6xv62jjw3phv8j5nfqi5x8hnfy4pqfcjcgz4b34k8sl")))) + "1z3qliszqca9m719q3qhdkh0ghh90g500avzdgi7pl77x5h3mpn2")))) ;; tests contain Python 2 syntax. (arguments '(#:tests? #false)) (native-inputs - (list python-setuptools-57)))) + (list python-setuptools)))) (define-public python-docx (package diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm index 58952049a1..239a2cc780 100644 --- a/gnu/packages/sphinx.scm +++ b/gnu/packages/sphinx.scm @@ -597,7 +597,7 @@ (define-public python-sphinx-panels (substitute* "setup.py" (("sphinx>=2,<5") "sphinx>=2,<6"))))))) - (propagated-inputs (list python-docutils-0.15 python-sphinx-5)) + (propagated-inputs (list python-docutils-0.16 python-sphinx-5)) (native-inputs (list python-pytest python-pytest-regressions -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:12:40 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:12:40 +0000 Received: from localhost ([127.0.0.1]:34821 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOsx-0000Yc-L0 for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:39 -0400 Received: from 20.mo581.mail-out.ovh.net ([46.105.49.208]:39945) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOsq-0000Wa-JR for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:33 -0400 Received: from director4.ghost.mail-out.ovh.net (unknown [10.109.148.79]) by mo581.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQk7368z1Jrx for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:30 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-w6wtx (unknown [10.111.182.240]) by director4.ghost.mail-out.ovh.net (Postfix) with ESMTPS id AACC01FD7F; Sun, 9 Mar 2025 22:12:30 +0000 (UTC) Received: from ngraves.fr ([37.59.142.112]) by ghost-submission-5b5ff79f4f-w6wtx with ESMTPSA id U/qyFE4SzmcVZAEAYM+2vw (envelope-from ); Sun, 09 Mar 2025 22:12:30 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-112S006e37466bc-bfcf-423c-83b6-faf1893af56d, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 22/24] gnu: python-importlib-resources: Update python-setuptools input. Date: Sun, 9 Mar 2025 23:11:30 +0100 Message-ID: <20250309221153.334-22-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250309221153.334-1-ngraves@ngraves.fr> References: <20250309221153.334-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 1318991742760575714 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudejiedvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrdduuddvnecuvehluhhsthgvrhfuihiivgepfeenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehkedumgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=bpH30mX/bGbiVOwS+1XlTilw8hQCZR3VjUtgoaInDB8=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741558351; v=1; b=3Rj9PBcd8Y7Y+vjSXV4j1heaFb0PoEx61LkEse1CHu12fXpahHYM92k5Tv5/01cFMx52g+A+ f9KwEWcnI0uIJlZSVXMLlZDkOugs4a823Cq9GEdL3Zt9tHahkVZGHCX+yw0vvXsBZs5qozhW7+0 bQ4/4HShwzEYY/ne1YiOEc3BV1v1zYITj/HnihzwKUQLhcI+SuCvx/+sVyEw1Krz2gdbwugWLR4 jl0UnOiKAnhf5gUF31IzuBYMd43TSuf/8YkiBA8m5vyLI4toICRByFskaLxYn1R4VBpJjTZKfmE /x44Yr1GaxlWdde1LPw1eDvaAZw63KWXhMO6a9b42+8zg== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-xyz.scm (python-importlib-resource) [native-inputs]: Replace python-setuptools-57 by python-setuptools. --- gnu/packages/python-xyz.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 72906d7b37..ace13dd419 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -12913,7 +12913,7 @@ (define-public python-importlib-resources python-pytest-enabler python-pytest-flake8 python-pytest-mypy - python-setuptools-57 + python-setuptools python-setuptools-scm)) (propagated-inputs (list python-zipp)) -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:13:14 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:13:14 +0000 Received: from localhost ([127.0.0.1]:34845 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOtV-0000cP-Ar for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:13:13 -0400 Received: from 4.mo582.mail-out.ovh.net ([87.98.184.159]:49123) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOss-0000Wk-BP for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:35 -0400 Received: from director1.ghost.mail-out.ovh.net (unknown [10.109.140.55]) by mo582.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQm5qqlz1Vb5 for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:32 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-k9x8f (unknown [10.111.174.63]) by director1.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 96B741FE7E; Sun, 9 Mar 2025 22:12:32 +0000 (UTC) Received: from ngraves.fr ([37.59.142.111]) by ghost-submission-5b5ff79f4f-k9x8f with ESMTPSA id SimgFFASzmfwkgEAbu+FNQ (envelope-from ); Sun, 09 Mar 2025 22:12:32 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-111S005a237ecb2-630e-4910-b7df-0fc83a110fe6, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 23/24] gnu: python-louvain: Use pyproject-build-system. Date: Sun, 9 Mar 2025 23:11:31 +0100 Message-ID: <20250309221153.334-23-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250309221153.334-1-ngraves@ngraves.fr> References: <20250309221153.334-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 1319554692877181666 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudejiedvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepvdehleeiffehtedvlefhffffjeefgfduhfetkeevheeiteduiedugfekuedtheejnecuffhomhgrihhnpehgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddrudduudenucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheekvdgmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=zEPrCrNkDdTVXbBmX+pMHuTJNI5OJ6O9jo2EwSqRdWM=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741558352; v=1; b=06MQKVAgtmqL0vck42DppV8lVHiNH04fEPYT5XmpLIZ0RJ47Top543U3E7htr25XkEvDsWad 5f/czshBzrCYMahqLiBL1fpYAn0l6Uwroo7dRtEgmQt1F1a09fGIpzXkRgaDeHFYQ4cSU8+LzBk kf2d5qFvxSH+/8U3DTUcQXMRHdDwujkV2PzhU43rNTWeuHabJrEUAfNQ7Z65mCBCfA67bdX2/or olMyz1W605EnpWn1peZ3/9xB32iaVV+NP29Z2W6YNY2PTta5fKbfbAfgtkzbM0ql4BZ2qHHuC9r giBIdgzEEIe0oAXXeYmtDJCZRWpuhTUSqFHFfuNwcltag== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/graph.scm (python-louvain) [build-system]: Switch from python-build-system to pyproject-build-system. [native-inputs]: Replace python-setuptools-57 by python-setuptools. Add python-wheel. --- gnu/packages/graph.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm index f29a71c0d7..22fbf07229 100644 --- a/gnu/packages/graph.scm +++ b/gnu/packages/graph.scm @@ -388,9 +388,9 @@ (define-public python-louvain (patches (search-patches "python-louvain-fix-test.patch")) (sha256 (base32 "0sx53l555rwq0z7if8agirjgw4ddp8r9b949wwz8vlig03sjvfmp")))) - (build-system python-build-system) + (build-system pyproject-build-system) (native-inputs - (list python-setuptools-57)) ;for use_2to3 support + (list python-setuptools python-wheel)) (propagated-inputs (list python-networkx python-numpy)) (home-page "https://github.com/taynaud/python-louvain") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 18:13:16 2025 Received: (at 76835) by debbugs.gnu.org; 9 Mar 2025 22:13:16 +0000 Received: from localhost ([127.0.0.1]:34847 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trOtY-0000cY-2c for submit@debbugs.gnu.org; Sun, 09 Mar 2025 18:13:16 -0400 Received: from 4.mo584.mail-out.ovh.net ([178.32.98.131]:36009) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trOst-0000XB-O8 for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 18:12:36 -0400 Received: from director6.ghost.mail-out.ovh.net (unknown [10.109.176.103]) by mo584.mail-out.ovh.net (Postfix) with ESMTP id 4Z9vQp1sZtz1T0Y for <76835@debbugs.gnu.org>; Sun, 9 Mar 2025 22:12:34 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-7z4j4 (unknown [10.110.164.243]) by director6.ghost.mail-out.ovh.net (Postfix) with ESMTPS id F3D511FDC0; Sun, 9 Mar 2025 22:12:33 +0000 (UTC) Received: from ngraves.fr ([37.59.142.107]) by ghost-submission-5b5ff79f4f-7z4j4 with ESMTPSA id HTbFM1ESzmcRmgAARZE3+w (envelope-from ); Sun, 09 Mar 2025 22:12:33 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-107S001226023ad-b8af-4de7-a72c-1e3af23fdc24, 196D73215860B9B374AEA1D4B43499A65472C7F7) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v2 24/24] gnu: Remove python-setuptools-57. Date: Sun, 9 Mar 2025 23:11:32 +0100 Message-ID: <20250309221153.334-24-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250309221153.334-1-ngraves@ngraves.fr> References: <20250309221153.334-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 1320117642325123810 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudejiedvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutdejnecuvehluhhsthgvrhfuihiivgepvdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehkeegmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=cWVKB9/o7lmh9g8snfIntaOasfm/EjLD/pIkblsXusU=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741558354; v=1; b=4aqx4oeFGqLpBx+OxMToVWA3sZbxIp9QqNEA3K2RvP/lyGDoIGbKcMvbPCgTDY7mk2Vocxfu 04dXYa3FCtHauVpS3zsjpvxrSqr3RQ101Gl2Z3311tdxbXYUjT5IHkMVVnWQsrEjEI9ihNOTj+d wZG1OtKNB6gzpLkPsYWTKiac/qiZfN2NluB6weBT/KyA4ERIK71My3+Djy2zSVW/V1/EH62tmsU qXVclMbCyIMjImghCVH2hNVxGCWZcUbuTQg+nAYgYe60RSxbn1Y+zP/lwHMvup4qUwX+i1MKcDC roTY2nccO40dIiFpE4PRHeUrn7KxU2QVQ5WbLj1anfOAg== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-build.scm (python-setuptools-57): Delete variable. --- gnu/packages/python-build.scm | 12 ------------ 1 file changed, 12 deletions(-) diff --git a/gnu/packages/python-build.scm b/gnu/packages/python-build.scm index 6bea44fee6..85115afe25 100644 --- a/gnu/packages/python-build.scm +++ b/gnu/packages/python-build.scm @@ -344,18 +344,6 @@ (define-public python-setuptools license:asl2.0 ;packaging is dual ASL2/BSD-2 license:bsd-2)))) -;; This is the last version with use_2to3 support. -(define-public python-setuptools-57 - (package - (inherit python-setuptools) - (version "57.5.0") - (source (origin - (inherit (package-source python-setuptools)) - (uri (pypi-uri "setuptools" version)) - (sha256 - (base32 - "091sp8lrin7qllrhhx7y0iiv5gdb1d3l8a1ip5knk77ma1njdlyr")))))) - (define-public python-wheel (package (name "python-wheel") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:02 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:03 +0000 Received: from localhost ([127.0.0.1]:35294 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShR-00016C-41 for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:02 -0400 Received: from 6.mo581.mail-out.ovh.net ([188.165.39.218]:43217) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShN-00015o-Er for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:16:59 -0400 Received: from director2.ghost.mail-out.ovh.net (unknown [10.109.140.34]) by mo581.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0rl0ds5z1Db8 for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:16:54 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-w6wtx (unknown [10.111.182.62]) by director2.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 8FD501FE8B; Mon, 10 Mar 2025 02:16:54 +0000 (UTC) Received: from ngraves.fr ([37.59.142.99]) by ghost-submission-5b5ff79f4f-w6wtx with ESMTPSA id L7HMDJZLzmeXCQIAYM+2vw (envelope-from ); Mon, 10 Mar 2025 02:16:54 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-99G003756542c9-e177-48fe-aa34-9dca14f870e2, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 01/40] gnu: gunicorn: Migrate 'check phase to pyproject-build-system. Date: Mon, 10 Mar 2025 03:16:06 +0100 Message-ID: <20250310021652.17530-1-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5446540802342511330 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekudduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffoggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepkeffgeetfffgffejgeejvdffgfdtvdeuueetgfefuedvjeegvdegjeejveeuueevnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrdelleenucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheekudgmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=rBtZRVTmBQn0k7mxS0KhdX3ixU09stJCekhyqAXQReA=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573015; v=1; b=KWcWFUlkFc7YUJOddQuGYok0NHNK6KTsB3UAALJbger84rWfX7etha4q20PztkOMzpxt6rNZ ELULnjM8StODWAl/HbM6JqxUMeHhuUv5Jd3O8003OmSuZtMRHUKkbJ0SKovzm73/bHQw+AZj6Sx J9cBXjTjOr8Ka5uJn0R1C6lcwcGhMzZTRWFrzh0w+CHgJNoItdVnLEreL2fF1Z7K1QNzcakqg5l h1+a9DR915VzkcV1H5nvtUr8hrdsvdAwGeluiflJbH0dNDdedysn/fkyCsMJi1f2rOShx/w8mX7 5mEtV063EvIBbOScTH4qu97gnnLSvsTDz9GgR+sQiB9nA== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-web.scm (gunicorn)[arguments] {phases}: Remove 'check phase and migrate its flags to... {test-flags}: ...here. --- gnu/packages/python-web.scm | 16 +++++----------- 1 file changed, 5 insertions(+), 11 deletions(-) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 7495616f2e..4765ab2358 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -7304,23 +7304,17 @@ (define-public gunicorn (outputs '("out" "doc")) (build-system pyproject-build-system) (arguments - `(#:phases + `(#:test-flags + ;; Disable the geventlet tests because eventlet uses dnspython, which + ;; does not work in the build container due to lack of /etc/resolv.conf + '("--ignore=tests/workers/test_geventlet.py") + #:phases (modify-phases %standard-phases (add-after 'build 'build-doc (lambda _ (invoke "make" "-C" "docs" "PAPER=a4" "html" "info") (delete-file "docs/build/texinfo/Makefile") (delete-file "docs/build/texinfo/Gunicorn.texi"))) - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (if tests? - (begin - (invoke "pytest" "-vv" - ;; Disable the geventlet tests because eventlet uses - ;; dnspython, which does not work in the build - ;; container due to lack of /etc/resolv.conf, etc. - "--ignore=tests/workers/test_geventlet.py")) - (format #t "test suite not run~%")))) (add-after 'install 'install-doc (lambda* (#:key outputs #:allow-other-keys) (let* ((doc (string-append (assoc-ref outputs "doc") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:07 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:08 +0000 Received: from localhost ([127.0.0.1]:35329 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShW-00018U-MY for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:07 -0400 Received: from 16.mo550.mail-out.ovh.net ([178.33.104.224]:47891) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShP-00015u-BY for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:00 -0400 Received: from director11.ghost.mail-out.ovh.net (unknown [10.108.17.95]) by mo550.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0rn19Rnz1VV4 for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:16:56 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-mhgdv (unknown [10.110.178.109]) by director11.ghost.mail-out.ovh.net (Postfix) with ESMTPS id A6F411FEE7; Mon, 10 Mar 2025 02:16:56 +0000 (UTC) Received: from ngraves.fr ([37.59.142.108]) by ghost-submission-5b5ff79f4f-mhgdv with ESMTPSA id sVxYFphLzmc5OgAALkQnrw (envelope-from ); Mon, 10 Mar 2025 02:16:56 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-108S0022868175a-a2c9-4a6d-9f5d-55c21a9a870d, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 03/40] gnu: python-carbon: Update to 1.1.10. 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Date: Mon, 10 Mar 2025 03:16:10 +0100 Message-ID: <20250310021652.17530-5-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5447666699281359586 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekuddvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrdelkeenucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheekudgmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=xQRgEjSW2xWvYaoyAzEURgSSVTlhHit+rDSzlN7Cl+8=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573018; v=1; b=ZU2fjimeF0XD5fkxeiFOH5rTzgB2K5d53YNE029AydyyDYQq4wFuPI2kARUUTFHKL2+8MQvb Q1miTiqpFO1bXMIynbrcyz+1mqvsejCAofZRRqMnKbeMF/EnGbTRfhDh0Gc153LiBeUE4A4qN9b WdpPTV+J4GoEBGNhOVyfw3ahizgoI85OM0KZH1aATjtd/grY6grRs21KLAnT3hqkx7DC95G8ZCc GmuimCq5ZDdyT8K210t7WbCTlqWbVqSR8WbukTQhAHqzcmXbi1YbTukIA08MwdziByZPKuB8vKl o8CGC2fRpr1nMe8/iLcI+sTRifdm2fzhzGHONM5ZWgpiA== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-web.scm (python-h2)[arguments]{test-flags}: Fix quoting. --- gnu/packages/python-web.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 4765ab2358..2438fba134 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -2483,9 +2483,9 @@ (define-public python-h2 (string-join (list "not test_remotesettingschanged_repr" ;; This test exceededs the Hypothesis deadline. - ,@(if (target-riscv64?) - `("test_changing_max_frame_size") - '()) + #$@(if (target-riscv64?) + #~("test_changing_max_frame_size") + #~()) "test_streamreset_repr" "test_settingsacknowledged_repr" "test_connectionterminated_repr[None-None]" -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:09 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:09 +0000 Received: from localhost ([127.0.0.1]:35348 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShY-00019e-Me for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:09 -0400 Received: from 3.mo583.mail-out.ovh.net ([46.105.40.108]:38383) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShN-00015r-Hh for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:02 -0400 Received: from director7.ghost.mail-out.ovh.net (unknown [10.109.148.34]) by mo583.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0rl4hfVz1Rh2 for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:16:55 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-jjqvw (unknown [10.110.178.32]) by director7.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 651EB1FE8C; Mon, 10 Mar 2025 02:16:55 +0000 (UTC) Received: from ngraves.fr ([37.59.142.102]) by ghost-submission-5b5ff79f4f-jjqvw with ESMTPSA id vCvaCpdLzmfq5wYA2eqSKA (envelope-from ); Mon, 10 Mar 2025 02:16:55 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-102R0042a54d3e9-21a4-4e3f-a304-15a0a760a449, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 02/40] gnu: python-unyt: Avoid deprecation failure in tests. 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(native-inputs (list python-pint -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:10 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:10 +0000 Received: from localhost ([127.0.0.1]:35353 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShZ-00019y-88 for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:10 -0400 Received: from 6.mo582.mail-out.ovh.net ([87.98.177.69]:54687) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShQ-00015v-4a for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:03 -0400 Received: from director2.ghost.mail-out.ovh.net (unknown [10.108.17.95]) by mo582.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0rp1VXpz1QSd for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:16:57 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-4kx2k (unknown [10.110.168.179]) by director2.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 931F91FE8B; Mon, 10 Mar 2025 02:16:57 +0000 (UTC) Received: from ngraves.fr ([37.59.142.109]) by ghost-submission-5b5ff79f4f-4kx2k with ESMTPSA id TvTzGplLzmdwDQoASdxPKQ (envelope-from ); Mon, 10 Mar 2025 02:16:57 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-109S0031b77f94d-80a0-40ac-b578-394f35c21285, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 04/40] gnu: Add python-rrdtool. 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Date: Mon, 10 Mar 2025 03:16:11 +0100 Message-ID: <20250310021652.17530-6-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5447948176469517026 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekuddvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnheptdegffefuddutdeuiedujeeiveefjefhjeeugeevudduleffjeeiueehtdelveejnecuffhomhgrihhnpehgrhgrphhhihhtvggrphhprdhorhhgpdhgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddruddtleenucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheekfegmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=g4QVj1INg+8sLxsWuWBB5nJMddPm5VfBS6Z40M2svLk=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573019; v=1; b=vz7Y3bSGMFQGEM7dwRvOgU4xJfxw/ZTBIZo7bFceuSC7HmxEOs+bdIDSoej09oYmi4W/RmuU 2EgOVyJ7bMpe1MHmb+YmiaaXWoSAbD5c1TVv2nyrN0XpugIorxN+Dm4otpHWBRH31Acz5Hf/lSl E5c2f3SzQ4fCvWcEqkp3BxuJSZZ0tLW0X3ES6z9yCmVb3+C3Y8ACDfUkreG9ij8VkfiDdamG0Li wZrprzZ+wyxQaqsoiIXoGx+5OOe5t5BIMSBsxIMyEIdjkRMaqm5xv396MtjmWpjqUK7yzWpKN0c Bh02gz8uBIl/UbPvwMcVfsF5xbn/02fYH4n58VgbSwBOQ== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/monitoring.scm (graphite-web): Update to 1.1.10-2.49c28e2. --- gnu/packages/monitoring.scm | 99 +++++++++++++++++++++++-------------- 1 file changed, 62 insertions(+), 37 deletions(-) diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm index b75500fc08..1009c32783 100644 --- a/gnu/packages/monitoring.scm +++ b/gnu/packages/monitoring.scm @@ -69,6 +69,7 @@ (define-module (gnu packages monitoring) #:use-module (gnu packages prometheus) #:use-module (gnu packages python) #:use-module (gnu packages python-build) + #:use-module (gnu packages python-science) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (gnu packages rrdtool) @@ -461,45 +462,69 @@ (define-public python-carbon (license license:asl2.0))) (define-public graphite-web - (package - (name "graphite-web") - (version "1.1.10") - (source - (origin - (method url-fetch) - (uri (pypi-uri "graphite-web" version)) - (sha256 - (base32 - "0nnk3kwn0b6bq9xnmv9bac6hpcbdgpgwf283c1ck5nm80panh61z")))) - (build-system python-build-system) - (arguments - `(#:tests? #f ;XXX: not in PyPI release & requires database - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'relax-requirements - (lambda _ - (substitute* "setup.py" - ;; Allow newer versions of django-tagging. - (("django-tagging==") "django-tagging>=") - ;; And Django. - (("Django>=1\\.8,<3\\.1") "Django>=1.8,<4")))) - ;; Don't install to /opt - (add-after 'unpack 'do-not-install-to-/opt - (lambda _ (setenv "GRAPHITE_NO_PREFIX" "1") #t))))) - (propagated-inputs - (list python-cairocffi - python-django-3.2 - python-django-tagging - python-pyparsing - python-pytz - python-six - python-urllib3)) - (home-page "https://graphiteapp.org/") - (synopsis "Scalable realtime graphing system") - (description "Graphite is a scalable real-time graphing system that does + (let ((commit "49c28e2015d605ad9ec93524f7076dd924a4731a") + (revision "2")) + (package + (name "graphite-web") + (version (git-version "1.1.10" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/graphite-project/graphite-web") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0bcc6jh7gyp8f54dzy4zza1z46gk3530r952pi86irf834z106sg")))) + (build-system pyproject-build-system) + (arguments + `(#:tests? #f ;XXX: Requires database, unable to run now + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "setup.py" + ;; Allow newer versions of django-tagging. + (("django-tagging==") "django-tagging>=") + ;; And Django. + (("Django>=3\\.2,<4") "Django>=4,<5")))) + ;; Don't install to /opt + (add-after 'unpack 'do-not-install-to-/opt + (lambda _ (setenv "GRAPHITE_NO_PREFIX" "1"))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (mkdir-p "storage/log/webapp") + (with-directory-excursion "webapp" + (invoke "./manage.py" "test" "--pythonpath=." "tests" + "-k" (string-join + (list + "not test_dashboard_save_temporary_xss_key" + "test_dashboard_save_temporary_xss_name") + " and not "))))))))) + (native-inputs + (list python-carbon + python-mock + python-pytest + python-rrdtool + python-setuptools + python-tzdata + python-wheel + python-whisper)) + (propagated-inputs + (list python-cairocffi + python-django-4.2 + python-django-tagging + python-pyparsing + python-pytz + python-six + python-urllib3)) + (home-page "https://graphiteapp.org/") + (synopsis "Scalable realtime graphing system") + (description "Graphite is a scalable real-time graphing system that does two things: store numeric time-series data, and render graphs of this data on demand.") - (license license:asl2.0))) + (license license:asl2.0)))) (define-public python-prometheus-client (package -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:11 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:12 +0000 Received: from localhost ([127.0.0.1]:35361 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShb-0001Ab-0t for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:11 -0400 Received: from 19.mo561.mail-out.ovh.net ([178.32.98.231]:54149) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShT-00016M-0g for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:04 -0400 Received: from director7.ghost.mail-out.ovh.net (unknown [10.109.148.12]) by mo561.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0rs3RxWz1Qqy for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:01 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-jwqsr (unknown [10.110.164.244]) by director7.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 515671FE5C; Mon, 10 Mar 2025 02:17:01 +0000 (UTC) Received: from ngraves.fr ([37.59.142.102]) by ghost-submission-5b5ff79f4f-jwqsr with ESMTPSA id +IlmDJ1LzmewhBgABKiAZw (envelope-from ); Mon, 10 Mar 2025 02:17:01 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-102R00439f1306e-76e8-4768-a120-e613529a0ff0, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 08/40] gnu: python-cfn-lint: Update to 1.28.0. 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"--ignore=tests/test_mypy.py" -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:14 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:14 +0000 Received: from localhost ([127.0.0.1]:35373 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShd-0001BL-7J for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:14 -0400 Received: from 2.mo561.mail-out.ovh.net ([46.105.75.36]:35209) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShU-00016k-Fg for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:05 -0400 Received: from director3.ghost.mail-out.ovh.net (unknown [10.108.2.54]) by mo561.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0rt61bDz1Qmj for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:02 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-w6wtx (unknown [10.111.174.164]) by director3.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 69CDF1FDC5; Mon, 10 Mar 2025 02:17:02 +0000 (UTC) Received: from ngraves.fr ([37.59.142.103]) by ghost-submission-5b5ff79f4f-w6wtx with ESMTPSA id iefdOZ1Lzme3CQIAYM+2vw (envelope-from ); Mon, 10 Mar 2025 02:17:02 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-103G00592d02654-47e0-4e90-a80a-d9038cfcfa7e, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 09/40] gnu: patchwork: Update to 3.2.1. Date: Mon, 10 Mar 2025 03:16:14 +0100 Message-ID: <20250310021652.17530-9-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5448792602358768354 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekudduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutdefnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehiedumgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=RCnreOu/z7ZbXdD2GVsyiDvN4V7fZy4wOqFMI8XnqDM=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573023; v=1; b=SgpYZyqnUnXXyS1bKirtCyl2xym3XjVA+wWW+I/Xa6YoW6AED5JfnwDvKWDjwyPfXe/zpwd/ 9E4g/yo9YeqV38NgVqmDj8S3czAx6KYoIxLfCT2GCK002hHAz4oRFOGbHypXOOhY4f6zabSjHrD NXuicx2vsuruvaXAOafhj7BqsiPjLpbZcb9USL4k1oZBPYsqrb+KSGE3UK3y3VFAhbF60jBBE1B UXH6O3Iqnff7NA0XyjkdoFVbCEFAHfVdf84GrjLR7PJNtNGDKtjGclOAy2P+9GKNcP2hzgjDNN/ mrNAqYpkXrIOV/Gt6FjpphKqDXnWx5dt4iXCAwmmrF2Dg== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/patchutils.scm (patchwork): Update to 3.2.1. --- gnu/packages/patchutils.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/patchutils.scm b/gnu/packages/patchutils.scm index 3cd3507b07..b2b84046b4 100644 --- a/gnu/packages/patchutils.scm +++ b/gnu/packages/patchutils.scm @@ -370,7 +370,7 @@ (define-public meld (define-public patchwork (package (name "patchwork") - (version "3.1.1") + (version "3.2.1") (source (origin (method git-fetch) (uri (git-reference @@ -379,7 +379,7 @@ (define-public patchwork (file-name (git-file-name name version)) (sha256 (base32 - "0is9d4gf93jcbyshyj2k3kjyrjnvimrm6bai6dbcx630md222j5w")))) + "04ikawdyhjwspxvhazbp5f5vym672y0jcw8rd2m75h9ipcpnyxim")))) (build-system python-build-system) (arguments `(;; TODO: Tests require a running database @@ -503,7 +503,7 @@ (define pythonpath (inputs (list python-wrapper)) (propagated-inputs - (list python-django-3.2 + (list python-django ;; TODO: Make this configurable python-psycopg2 python-mysqlclient -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:15 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:15 +0000 Received: from localhost ([127.0.0.1]:35378 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShe-0001Bn-Jd for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:15 -0400 Received: from 10.mo550.mail-out.ovh.net ([178.32.96.102]:58085) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShV-00017H-MT for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:06 -0400 Received: from director6.ghost.mail-out.ovh.net (unknown [10.109.176.202]) by mo550.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0rw138Vz1VNl for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:04 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-tq2gt (unknown [10.111.182.122]) by director6.ghost.mail-out.ovh.net (Postfix) with ESMTPS id C47971FE92; Mon, 10 Mar 2025 02:17:03 +0000 (UTC) Received: from ngraves.fr ([37.59.142.104]) by ghost-submission-5b5ff79f4f-tq2gt with ESMTPSA id AxJrF59LzmfUxAIA2vQb6Q (envelope-from ); Mon, 10 Mar 2025 02:17:03 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-104R0058184d03e-5b6b-41ea-acf8-c874830b6d94, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 10/40] gnu: Remove python-django-3.2. Date: Mon, 10 Mar 2025 03:16:15 +0100 Message-ID: <20250310021652.17530-10-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5449355550602617570 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekudduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutdegnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehhedtmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=To/s2b8m1fi88PjP78tZwz34yOBk4LlIrTxg0tdSnYk=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573024; v=1; b=rZrJhz5FWb17auqhSNnrJB6vpnWybJgvHlDQxUz4EDsuE0O41+hZOcr5KMKqLV/1Eflo4u8e mp5pdjrYT2NyHaQCrPEaWc+pUCTD4U4gkZUGrdKtJkYe358gcHUPp2j2xK6ShlOWP5KH9Ef8DnW fu20J+kXtpi6CGgRbwA3lYbuzAvb/lI2tl8MDuIL/VgoEcvUezzB5td2SxAnBlqxLOznVZYkyPG eDVOnXOVNvEif/10djADZQ+V/Sc5HagyqVD9Ua+G25cTJiS6CHGCkoqoGWZ1V+sRPhscZ7djzOL xZMQEIrc4py0mkB4XhU0zGMRTM3KU9JRmm3OxemjoNcpQ== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/django.scm (python-django-3.2): Delete variable. --- gnu/packages/django.scm | 20 ++------------------ 1 file changed, 2 insertions(+), 18 deletions(-) diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm index cb9df0d2df..20522231ac 100644 --- a/gnu/packages/django.scm +++ b/gnu/packages/django.scm @@ -148,26 +148,10 @@ (define-public python-django-4.2 ;; This CVE seems fixed since 4.2.1. (lint-hidden-cve . ("CVE-2023-31047")))))) -(define-public python-django-3.2 - (package - (inherit python-django-4.2) - (version "3.2.21") - (source (origin - (method url-fetch) - (uri (pypi-uri "Django" version)) - (sha256 - (base32 - "0g3zm2glh76g31q06g6fwkwvkrphjj3mnap5sgk1hx3v9r44rpm5")))) - (native-search-paths '()) ;no need for TZDIR - (propagated-inputs - (modify-inputs (package-propagated-inputs python-django-4.2) - ;; Django 4.0 deprecated pytz in favor of Pythons built-in zoneinfo. - (append python-pytz))))) - ;; archivebox requires django>=3.1.3,<3.2 (define-public python-django-3.1.14 (package - (inherit python-django-3.2) + (inherit python-django-4.2) (version "3.1.14") (source (origin (method url-fetch) @@ -176,7 +160,7 @@ (define-public python-django-3.1.14 (base32 "0ix3v2wlnplv78zxjrlw8z3hiap2d5mxvk0ny2fc65526shsb93j")))) (propagated-inputs - (modify-inputs (package-propagated-inputs python-django-3.2) + (modify-inputs (package-propagated-inputs python-django-4.2) ;; Django 4.0 deprecated pytz in favor of Pythons built-in zoneinfo. (append python-pytz))))) -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:16 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:16 +0000 Received: from localhost ([127.0.0.1]:35383 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShf-0001C1-FN for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:15 -0400 Received: from 10.mo550.mail-out.ovh.net ([178.32.96.102]:42359) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShV-00017j-QZ for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:06 -0400 Received: from director6.ghost.mail-out.ovh.net (unknown [10.109.176.202]) by mo550.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0rw5pbTz1VV4 for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:04 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-drpd9 (unknown [10.110.178.91]) by director6.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 912771FDAB; Mon, 10 Mar 2025 02:17:04 +0000 (UTC) Received: from ngraves.fr ([37.59.142.102]) by ghost-submission-5b5ff79f4f-drpd9 with ESMTPSA id mu32HKBLzmepCCcAJPFiVw (envelope-from ); Mon, 10 Mar 2025 02:17:04 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-102R004f0e14994-545c-46a7-848a-ae8560242bae, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 11/40] gnu: python-uqbar: Update to 7.0.0. Date: Mon, 10 Mar 2025 03:16:16 +0100 Message-ID: <20250310021652.17530-11-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5449355553347330786 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekudduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepvdehleeiffehtedvlefhffffjeefgfduhfetkeevheeiteduiedugfekuedtheejnecuffhomhgrihhnpehgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddruddtvdenucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheehtdgmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=Kjw640JkcXK5JzUAAKUs+kILtZYK/1DaQX4iwtqpxWc=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573024; v=1; b=KBx9muquHm6W4DXQFzfqaz2mT1p7dGMV9WbJVueapj/jcOKkPvjwV5Ktij4AsyiASUUtpNIj VeqODFCNmrZSjx0szGehQpVL5MvH5jmnH7yRg26NZ8U7zAJcjnztnN8E8jgg8wJjEL6j48qwZht JeYhfNt66DbzEmEUEhLqa7l1DX0nV8+xwPIC2qMDxcpjed1OEXRHFfvtgk3/UfDeQL/2Keqi6+S wxIAJ/fmhaex39fTA05iHTloqynS2e6jGEYne/dzqBEhLDc2ITkk1mj2HA9Jk+HTleuCzXQxgPs 873JnswXheNOjLE/EYUj6fuyPFnrOWKSAa2CGbmXiITXA== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/graphviz.scm (python-uqbar): Update to 7.0.0. [propagated-inputs]: Replace python-sphinx-5 by python-sphinx, recursively. --- gnu/packages/graphviz.scm | 11 +++-------- 1 file changed, 3 insertions(+), 8 deletions(-) diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm index defd53df73..c23369acc4 100644 --- a/gnu/packages/graphviz.scm +++ b/gnu/packages/graphviz.scm @@ -208,7 +208,7 @@ (define-public python-pygraphviz (define-public python-uqbar (package (name "python-uqbar") - (version "0.6.9") + (version "7.0.0") (source (origin (method git-fetch) @@ -217,7 +217,7 @@ (define-public python-uqbar (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "037qj3rymm6xzdpklddfhmfp2p1bq9fi3jrvxj6gmharphd5z869")))) + (base32 "0qa32d2z7bg3h26r18dv55g9lghw59wln7rkcciavyyjh553q430")))) (build-system pyproject-build-system) (arguments ; XXX: Disable failing tests. (list #:test-flags '(list "tests" "-k" "not test_find_executable \ @@ -232,12 +232,7 @@ (define-public python-uqbar python-setuptools python-wheel)) (propagated-inputs - (list python-black python-sphinx-5 python-unidecode - (package/inherit python-sphinx-rtd-theme - (propagated-inputs - (modify-inputs - (package-propagated-inputs python-sphinx-rtd-theme) - (replace "python-sphinx" python-sphinx-5)))))) + (list python-black python-sphinx python-unidecode python-sphinx-rtd-theme)) (home-page "https://github.com/josiah-wolf-oberholtzer/uqbar") (synopsis "Tools for building documentation with Sphinx, Graphviz and LaTeX") (description -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:16 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:17 +0000 Received: from localhost ([127.0.0.1]:35385 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShg-0001CG-2Z for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:16 -0400 Received: from 16.mo581.mail-out.ovh.net ([46.105.72.216]:35863) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShX-00018D-5P for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:08 -0400 Received: from director9.ghost.mail-out.ovh.net (unknown [10.108.17.43]) by mo581.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0rx4GL2z1FJ0 for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:05 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-k56d9 (unknown [10.110.113.89]) by director9.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 565E11FD10; Mon, 10 Mar 2025 02:17:05 +0000 (UTC) Received: from ngraves.fr ([37.59.142.98]) by ghost-submission-5b5ff79f4f-k56d9 with ESMTPSA id TXUcCaFLzmdMyh8A34BVnQ (envelope-from ); Mon, 10 Mar 2025 02:17:05 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-98R002766660fd-5c88-4cbb-bc54-ec5208dc3770, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 12/40] gnu: Remove python-sphinx-autodoc-typehints-5. Date: Mon, 10 Mar 2025 03:16:17 +0100 Message-ID: <20250310021652.17530-12-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5449637025808376546 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekuddvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrdelkeenucevlhhushhtvghrufhiiigvpedunecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheekudgmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=oYiA+hiHCHZcsIT4arSkBUWw/Dz93rI3iiQnu+ebbaA=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573025; v=1; b=1vfviOgyidhJlm16p1QW/MSpIZI8lQf4YqqgJtwg4ZTjQj/7Sr92d39LRAqwpDZAARbb0ogq bIZPDusdE3ISGltjqT65C+rfWSsmx5oU+y9Ih/eQEGK4YLFvNu5Z3QcKT4CymNTB2NVBmH9zrXo H2dYcVkQe+frDm7qUYAxm1XXfu19sSkjqPe+obieQ8sbJEXQITIh5KxwUACxekBRJVZaSXso/kW I1mYtCivC+ObqgmpFE1Bz7bFIskXM6maZzDVl280lj2v7Qe+LgUoIRj/3rfLSse1wT7K2pCVdrb T7akc16BKOTHv2bazXDC4TkvOzIYpfNpHHwTP6OsDuk9Q== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/sphinx.scm (python-sphinx-autodoc-typehints-5): Delete variable. --- gnu/packages/sphinx.scm | 7 ------- 1 file changed, 7 deletions(-) diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm index 6847592a99..5f06cb04f5 100644 --- a/gnu/packages/sphinx.scm +++ b/gnu/packages/sphinx.scm @@ -1234,13 +1234,6 @@ (define-public python-sphinx-autodoc-typehints documenting acceptable argument types and return value types of functions.") (license license:expat))) -(define-public python-sphinx-autodoc-typehints-5 - (package/inherit python-sphinx-autodoc-typehints - (propagated-inputs - (modify-inputs - (package-propagated-inputs python-sphinx-autodoc-typehints) - (replace "python-sphinx" python-sphinx-5))))) - (define-public python-sphinx-pytest (package (name "python-sphinx-pytest") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:27 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:27 +0000 Received: from localhost ([127.0.0.1]:35420 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShr-0001F3-0g for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:27 -0400 Received: from 4.mo561.mail-out.ovh.net ([178.33.46.10]:36675) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShY-00018s-DD for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:09 -0400 Received: from director7.ghost.mail-out.ovh.net (unknown [10.109.139.54]) by mo561.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0ry6933z1Qqy for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:06 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-68m45 (unknown [10.108.54.81]) by director7.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 8C92F1FE5C; Mon, 10 Mar 2025 02:17:06 +0000 (UTC) Received: from ngraves.fr ([37.59.142.112]) by ghost-submission-5b5ff79f4f-68m45 with ESMTPSA id EkecDKJLzmeNEwAAdZqLTQ (envelope-from ); Mon, 10 Mar 2025 02:17:06 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-112S00619a11f83-10ab-4f32-be7a-6caec9c4555b, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 13/40] gnu: python-sphinx-panels: Update input to python-sphinx-5. Date: Mon, 10 Mar 2025 03:16:18 +0100 Message-ID: <20250310021652.17530-13-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5449918499278742242 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekudduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrdduuddvnecuvehluhhsthgvrhfuihiivgepfeenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehiedumgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=TPlfwm24WFV5hvRFKmvt9HJIRZliQP4ahrDPBwk4xbc=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573027; v=1; b=1XVjw8/+dzLTPP6v5BcpfXNBUymn0hGCZ6qS2G9pSxHS6roGj6Ay3ZRiXNSx7TpJVgUCoKdl zR2GfYrblVYWKF0W7jX9zJP0ycJKsVL28fLIaTA+nWP1j1wQcVxuJnrWXLXZx9MwX1cTsupY0br QSMOGyrYGRpgOFDbiIt2Dru2RaZBMRM2c+HmAVJWEZ7C37UPbK/Vdy/lWZ95ofnn3RS+MDImQGu PT6hBrhDeFeQa+QONEC8QKaG6eE7tmvPoJsFlL5hhNLC5hLWmvj4JepKDSEnT4p5y9EarlG0Uu2 CS3mKaYhxfSdhJWYaszvfjV4KqHHMCzQ8l1ITL/aen63A== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/sphinx.scm (python-sphinx-panels): [arguments]{phases}: Add 'loosen-requirements phase. [propagated-inputs]: Replace python-sphinx-4 by python-sphinx-5. --- gnu/packages/sphinx.scm | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm index 5f06cb04f5..024bfe986a 100644 --- a/gnu/packages/sphinx.scm +++ b/gnu/packages/sphinx.scm @@ -608,7 +608,15 @@ (define-public python-sphinx-panels (sha256 (base32 "1ivqz6yv96a2jp59kylg1gbkrmzq6zwilppz3ij0zrkjn25zb97k")))) (build-system pyproject-build-system) - (propagated-inputs (list python-docutils-0.15 python-sphinx-4)) + (arguments + (list #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'loosen-requirements + (lambda _ + (substitute* "setup.py" + (("sphinx>=2,<5") + "sphinx>=2,<6"))))))) + (propagated-inputs (list python-docutils-0.15 python-sphinx-5)) (native-inputs (list python-pytest python-pytest-regressions -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:28 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:28 +0000 Received: from localhost ([127.0.0.1]:35424 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShr-0001FB-FD for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:28 -0400 Received: from 3.mo560.mail-out.ovh.net ([46.105.58.226]:37187) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trSha-00019d-60 for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:11 -0400 Received: from director3.ghost.mail-out.ovh.net (unknown [10.108.2.54]) by mo560.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0s004LDz1f5w for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:07 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-qgvtf (unknown [10.110.101.220]) by director3.ghost.mail-out.ovh.net (Postfix) with ESMTPS id B58FC1FD39; Mon, 10 Mar 2025 02:17:07 +0000 (UTC) Received: from ngraves.fr ([37.59.142.100]) by ghost-submission-5b5ff79f4f-qgvtf with ESMTPSA id R401IKNLzmfgaxAAW/PBNw (envelope-from ); Mon, 10 Mar 2025 02:17:07 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-100R003a14c8eea-b447-4f34-8fe0-a2ac042f9aeb, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 14/40] gnu: python-numpy-documentation: Update python-sphinx native-input. Date: Mon, 10 Mar 2025 03:16:19 +0100 Message-ID: <20250310021652.17530-14-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5450199978203865826 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekudduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnheptddtgefhteeikeehffeuueefffelvefgueffteffjeefhedvjeeihedtjedvteevnecuffhomhgrihhnpehnuhhmphihrdhorhhgnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutddtnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehiedtmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=4YTWpvZ5s1O1wGFO7oUiGM3oi9yeZmF1Xvy96WdGT9g=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573028; v=1; b=gTCuO7/P+1KtA8oCXyfTmAd4t6lYm3T+t5u0N1FVqW7m/ZU5tymzvTqL/fk8t4LtBzEA/QUS YfFdLVAlUdv8bQ4w5sbEvE+YIpDhTmJYvwYv0YN8O4LX49FbturDf6H7S54vK3SOajvl0o84ry1 +xESmJcgSJovVY3UWyvqsTLEVSLLE4sLdNP9WRPRHzPUsTAQqP81bREqsE0O8XSHweYV9l8uUJz or/lhRYu9PQlxDR6LQdo9P1/YcV27YnAUeRXpgCvI+637pWlLYFh2eY48IL40H6FGAMS1u414/B qnPTR3sJtlgOkz0Ukuv8ElDHBC99+pvce1PXBoi9/1ubw== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-xyz.scm (python-numpy-documentation): [arguments]{phases}: Add phase 'avoid-external-deps. Adapt phase 'install by removing sphinx.ext.autodoc extension. [native-inputs]: Replace python-sphinx-4 by python-sphinx. Add python-sphinx-design. --- gnu/packages/python-xyz.scm | 14 +++++++++++++- 1 file changed, 13 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index bacfac6c42..6054a88562 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -9684,6 +9684,16 @@ (define-public python-numpy-documentation #:tests? #f ;we're only generating the documentation #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'avoid-external-deps + (lambda _ + ;; XXX: Avoid theme-switcher to avoid sphinx error + ;; TemplateNotFound('theme-switcher.html') + ;; XXX: Avoid version-switcher because it depends on the value + ;; of external https://numpy.org/doc/_static/versions.json + (substitute* "doc/source/conf.py" + (("\ +\"navbar_end\": \\[\"theme-switcher\", \"version-switcher\", ") + "\"navbar_end\": [")))) (add-before 'build 'add-gnu-freefont-to-texmf (lambda _ ;; XXX: The Sphinx-generated tex output specifies the GNU @@ -9729,6 +9739,7 @@ (define-public python-numpy-documentation (("\"contents\"") "'index'") ;; Disable Sphinx extensions that produce broken Texinfo. ((".*'numpydoc'.*") "") + ((".*'sphinx.ext.autodoc'.*") "") ((".*'sphinx.ext.autosummary'.*") "")) (invoke "make" "info" sphinxopts) ;; Install the HTML documentation. @@ -9752,7 +9763,8 @@ (define-public python-numpy-documentation python-pandas python-pydata-sphinx-theme python-scipy ;used by matplotlib - python-sphinx-4 + python-sphinx + python-sphinx-design python-sphinx-panels texinfo (texlive-updmap.cfg -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:28 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:28 +0000 Received: from localhost ([127.0.0.1]:35426 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShs-0001FR-6l for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:28 -0400 Received: from 10.mo575.mail-out.ovh.net ([46.105.79.203]:50807) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShb-0001AA-4H for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:12 -0400 Received: from director6.ghost.mail-out.ovh.net (unknown [10.109.139.54]) by mo575.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0s12yqcz1l80 for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:09 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-57mj8 (unknown [10.110.96.35]) by director6.ghost.mail-out.ovh.net (Postfix) with ESMTPS id C98871FDAB; Mon, 10 Mar 2025 02:17:08 +0000 (UTC) Received: from ngraves.fr ([37.59.142.97]) by ghost-submission-5b5ff79f4f-57mj8 with ESMTPSA id kluVJ6RLzmekEhIAXeKtsg (envelope-from ); Mon, 10 Mar 2025 02:17:08 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-97G0020a32e194-2676-47d6-a6f7-d9dd81ed4d04, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 15/40] gnu: Remove python-sphinx-4. 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Remove when unused. -(define-public python-sphinx-4 - (package - (inherit python-sphinx-5) - (version "4.5.0") - (source (origin - (method url-fetch) - (uri (pypi-uri "Sphinx" version)) - (sha256 - (base32 - "1rp28jryxwy24y8vpacclqihbizyi6b1s6id86pibvm46ybcmy3v")))) - (propagated-inputs - (modify-inputs (package-propagated-inputs python-sphinx) - (replace "python-docutils" python-docutils-0.15))) - (native-inputs - (modify-inputs (package-native-inputs python-sphinx) - (delete python-flit-core) - (append python-setuptools python-wheel))))) - (define-public python-sphinxcontrib-apidoc (package (name "python-sphinxcontrib-apidoc") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:29 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:29 +0000 Received: from localhost ([127.0.0.1]:35428 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShs-0001FX-Jo for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:29 -0400 Received: from 11.mo550.mail-out.ovh.net ([188.165.48.29]:38537) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShb-0001AI-CQ for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:13 -0400 Received: from director3.ghost.mail-out.ovh.net (unknown [10.108.9.32]) by mo550.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0s15fpKz1VZs for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:09 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-dwd76 (unknown [10.110.188.65]) by director3.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 9B7731FD39; Mon, 10 Mar 2025 02:17:09 +0000 (UTC) Received: from ngraves.fr ([37.59.142.100]) by ghost-submission-5b5ff79f4f-dwd76 with ESMTPSA id L+d1HqVLzmcfFQQAvw5ALg (envelope-from ); Mon, 10 Mar 2025 02:17:09 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-100R0036f66fbd8-3dda-48a8-8918-36d04d63bde1, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 16/40] gnu: Remove python-anyjson. Date: Mon, 10 Mar 2025 03:16:21 +0100 Message-ID: <20250310021652.17530-16-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5450762924514140898 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekudduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepteffleejueejhffgtdeuhfekleehkeefuedvffetjefhudeitddvhfdvvefgheejnecuffhomhgrihhnpegsihhtsghutghkvghtrdhorhhgnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutddtnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehhedtmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=xJidJNXup358/Nd78QiVaFZvKu/Md4pn5MT9vx3LZN4=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573029; v=1; b=RueKGHoxdEtTedfANcvV2cLdn+TXrr8tw25c+z9y5dQubUv1WP6Ta9kClq8iczAtaOp4L1/f wnMvRzU4pSHB8YqbI+otK0qQtH2j1voL7iDAPTASjFCVH6KoVC9hWUphFAnfWUPSw+rl3uDwfXq +ICUHXBLZ1nw2SM79XIPGH8wOZh+Y7ChZcRHx/vbqIxTjeycXOGm5mD9eyH7+qX9EwuSBdrAE/T BKyxUI+fOKPGhbxBWND1pPqqwYyP6h0fcyqD9TOntXV1LYDRkVjzY6vx/biykWjoSK5fUZkfDcC PKIH4WT2ey14/9JQDUiC0v41DcHDbhgqBjNbhjQXpYzjA== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) This package is a leaf package in Guix, is stale for 13 years, and its upstream repository is not even up anymore. * gnu/packages/python-xyz.scm (python-anyjson): Delete variable. --- gnu/packages/python-xyz.scm | 28 ---------------------------- 1 file changed, 28 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 6054a88562..558131fee6 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -21048,34 +21048,6 @@ (define-public python-pyquery fast xml and html manipulation.") (license license:bsd-3))) -(define-public python-anyjson - (package - (name "python-anyjson") - (version "0.3.3") - (source - (origin - (method url-fetch) - (uri (pypi-uri "anyjson" version)) - (sha256 - (base32 - "1fjph4alvcscsl5d4b6qpv1yh31jy05jxi1l0xff7lws7j32v09p")))) - (build-system python-build-system) - (arguments - `(;; We could possibly get tests working, but on Python 3 it's not so easy. - ;; Very strangely, 2to3 is run *during setup.py install* (or bdist, or - ;; whatever) so this transformation needs to be done before the tests - ;; can be run. Maybe we could add a build step to transform beforehand - ;; but it could be annoying/difficult. - #:tests? #f)) - (native-inputs (list python-setuptools-57)) ;for use_2to3 support - (home-page "https://bitbucket.org/runeh/anyjson/") - (synopsis - "Wraps best available JSON implementation in a common interface") - (description - "Anyjson loads whichever is the fastest JSON module installed -and provides a uniform API regardless of which JSON implementation is used.") - (license license:bsd-3))) - (define-public python-amqp (package (name "python-amqp") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:29 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:29 +0000 Received: from localhost ([127.0.0.1]:35432 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trSht-0001Ff-5X for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:29 -0400 Received: from 14.mo561.mail-out.ovh.net ([188.165.43.98]:56209) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShc-0001AX-92 for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:13 -0400 Received: from director1.ghost.mail-out.ovh.net (unknown [10.108.9.32]) by mo561.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0s24cGpz1Qn6 for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:10 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-9vblb (unknown [10.110.178.240]) by director1.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 64CC81FD37; Mon, 10 Mar 2025 02:17:10 +0000 (UTC) Received: from ngraves.fr ([37.59.142.114]) by ghost-submission-5b5ff79f4f-9vblb with ESMTPSA id FBrWEKZLzmeoIh8Akrx+OQ (envelope-from ); Mon, 10 Mar 2025 02:17:10 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-114S0083a3353c3-c082-49f0-8503-29eeb42a060a, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 17/40] gnu: Remove python-parameterizedtestcase. Date: Mon, 10 Mar 2025 03:16:22 +0100 Message-ID: <20250310021652.17530-17-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5451044402316567266 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekudduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepvdehleeiffehtedvlefhffffjeefgfduhfetkeevheeiteduiedugfekuedtheejnecuffhomhgrihhnpehgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddruddugeenucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheeiudgmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=xKr5LDdrjVR84mbXJj4kOmDjgidzQRVxkNEkMHNT5dU=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573030; v=1; b=Ay/otg5QzEgBGw3JJ8AdsKhopynjyRVDUWdY35g52HYaLLTRtKCcIezLgqVD46bmQQ+a0XdI fEAY1FLsgs2mP61zsJTQ2kEH1uUOhovHh+ym3/6QoPaEAUqd5wfsC93VFJJJmkdagbbhmP8Dn6N /oM0fKfmctE+AUxWBXGgiDpoTRcebSrdS+DQ7riwVNv0faT3Z8qWqf9eDMkK0UF5SVXfmnuvRK0 r1Muas4xar1ETsuExHk8FFeLztn1utU2ifvBmneKHNljMkQ3OUhIQubX9zb3npVIXTzoDEyhph4 oznaCkrhjCcQ6fCUdwDxPXFElKvbqE8WDaO31f+wFmbYw== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) This package is a leaf package in Guix, has been abandonned for 11 years (aside from a License change). * gnu/packages/python-check.scm (python-parameterizedtestcase): Delete variable. --- gnu/packages/python-check.scm | 19 ------------------- 1 file changed, 19 deletions(-) diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm index 1138e287f1..d8fa37b9f6 100644 --- a/gnu/packages/python-check.scm +++ b/gnu/packages/python-check.scm @@ -2925,25 +2925,6 @@ (define-public python-pandas-vet in an opinionated way.") (license license:expat))) -(define-public python-parameterizedtestcase - (package - (name "python-parameterizedtestcase") - (version "0.1.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "parameterizedtestcase" version)) - (sha256 - (base32 "0zhjmsd16xacg4vd7zb75kw8q9khn52wvad634v1bvz7swaivk2c")))) - (build-system python-build-system) - (native-inputs (list python-setuptools-57)) ;for use_2to3 - (home-page - "https://github.com/msabramo/python_unittest_parameterized_test_case") - (synopsis "Parameterized tests for Python's unittest module") - (description "This package provides parameterized tests for Python's -@code{unittest} module taking inspiration from pytest.") - (license license:expat))) - (define-public python-pytest-rerunfailures (package (name "python-pytest-rerunfailures") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:30 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:30 +0000 Received: from localhost ([127.0.0.1]:35436 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trSht-0001Fr-Ha for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:30 -0400 Received: from 9.mo582.mail-out.ovh.net ([87.98.171.146]:53845) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShd-0001As-6S for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:15 -0400 Received: from director3.ghost.mail-out.ovh.net (unknown [10.109.140.34]) by mo582.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0s3328xz1QQr for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:11 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-nw7f9 (unknown [10.110.168.242]) by director3.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 44C9E1FD39; Mon, 10 Mar 2025 02:17:11 +0000 (UTC) Received: from ngraves.fr ([37.59.142.103]) by ghost-submission-5b5ff79f4f-nw7f9 with ESMTPSA id beqkAKdLzmcGOgAA5U0qNg (envelope-from ); Mon, 10 Mar 2025 02:17:11 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-103G00567763bcf-f49b-4f97-a86b-3625aa151b1a, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 18/40] gnu: python-pyvcf: Rename package to python-pyvcf3. Date: Mon, 10 Mar 2025 03:16:23 +0100 Message-ID: <20250310021652.17530-18-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5451325875655008994 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekudduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepvdehleeiffehtedvlefhffffjeefgfduhfetkeevheeiteduiedugfekuedtheejnecuffhomhgrihhnpehgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddruddtfeenucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheekvdgmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=AHVFa4brTEc3914VeZuvjBjmm2UhfcSL+k6jSo7ejV8=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573031; v=1; b=n6ukuFeI/+HL0ogAvNJHcnyC34NzaZ5szYqyV+tAat1+P75GXOW3q84oGugH8gUdtSadX7v5 2+LDUhG7JP/egRO0UoSEPwOymaejD0GpMQq2ZlietSFceBpaaUT4p2H8zuVi56GqNYJqL0EbIUg o2CUahnBI6u0yv89w05wdpjOfFmhXMqyPlhsLpmbYFTOpD6jcYXNmT0JBpUYuPzBiLcs1wOFBTP y+c12OuSZE3tqUBOxCGSMZqf6wFMTzPB4VVFMDdPtzrOzot96oYVlyVoXVOnctRcWL2Nessddn3 hVc8Eg4eKUMOEFZAV7JcFYX4T00OppeLp8dXXvV5TPBAw== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/bioinformatics.scm (python-pyvcf): Define in terms of 'deprecated-package'. (python-pyvcf3): New variable, formerly known as "python-pyvcf". --- gnu/packages/bioinformatics.scm | 65 +++++++++++---------------------- 1 file changed, 21 insertions(+), 44 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6f4c5053b6..c593c37d35 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -23715,50 +23715,27 @@ (define-public tombo ;; Some parts may be BSD-3-licensed. (license license:mpl2.0))) -(define-public python-pyvcf - (let ((commit "476169cd457ba0caa6b998b301a4d91e975251d9") - (revision "0")) - (package - (name "python-pyvcf") - (version (git-version "0.6.8" revision commit)) - ;; Use git, because the PyPI tarballs lack test data. - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/jamescasbon/PyVCF.git") - ;; Latest release is not tagged. - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "0qf9lwj7r2hjjp4bd4vc7nayrhblfm4qcqs4dbd43a6p4bj2jv5p")))) - (build-system python-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'patch-sample-script - (lambda _ - ;; Add Python 3 compatibility to this sample script. - (substitute* "scripts/vcf_sample_filter.py" - (("print (.*)\n" _ arg) - (string-append "print(" arg ")\n"))))) - (add-after 'install 'remove-installed-tests - ;; Do not install test files. - (lambda* (#:key inputs outputs #:allow-other-keys) - (delete-file-recursively (string-append - (site-packages inputs outputs) - "/vcf/test"))))))) - (native-inputs - ;; Older setuptools is needed for use_2to3. - (list python-cython python-setuptools-57)) - (propagated-inputs - (list python-pysam python-rpy2)) - (home-page "https://github.com/jamescasbon/PyVCF") - (synopsis "Variant Call Format parser for Python") - (description "This package provides a @acronym{VCF,Variant Call Format} +;; This is a fork of the original unmaintained python-pyvcf. +(define-public python-pyvcf3 + (package + (name "python-pyvcf3") + (version "1.0.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PyVCF3" version)) + (sha256 + (base32 "0783pb2p5qx3vgwksc9b9vxbpdq7ax6znff9wa3h80cpicfdf5jb")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-setuptools)) + (native-inputs (list python-setuptools python-wheel)) + (home-page "https://github.com/dridk/PyVCF3") + (synopsis "Variant Call Format parser for Python") + (description "This package provides a @acronym{VCF,Variant Call Format} parser for Python.") - (license license:expat)))) + (license license:expat))) + +(define-deprecated/public-alias python-pyvcf python-pyvcf3) (define-public nanosv (package @@ -23772,7 +23749,7 @@ (define-public nanosv "1wl2daj0bwrl8fx5xi8j8hfs3mp3vg3qycy66538n032v1qkc6xg")))) (build-system python-build-system) (inputs - (list python-configparser python-pysam python-pyvcf)) + (list python-configparser python-pysam python-pyvcf3)) (home-page "https://github.com/mroosmalen/nanosv") (synopsis "Structural variation detection tool for Oxford Nanopore data") (description "NanoSV is a software package that can be used to identify -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:31 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:31 +0000 Received: from localhost ([127.0.0.1]:35438 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShu-0001G6-Aj for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:31 -0400 Received: from 8.mo581.mail-out.ovh.net ([46.105.77.114]:37701) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShe-0001BJ-KR for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:16 -0400 Received: from director4.ghost.mail-out.ovh.net (unknown [10.108.2.89]) by mo581.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0s45fb5z1Gnr for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:12 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-mpvdq (unknown [10.111.182.244]) by director4.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 690BE1FE88; Mon, 10 Mar 2025 02:17:12 +0000 (UTC) Received: from ngraves.fr ([37.59.142.103]) by ghost-submission-5b5ff79f4f-mpvdq with ESMTPSA id w0/ZL6dLzmevygIA83R+5Q (envelope-from ); Mon, 10 Mar 2025 02:17:12 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-103G005708beb42-59e6-400c-942a-fde7888a110c, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 19/40] gnu: gdal: Update to 3.10.2. Date: Mon, 10 Mar 2025 03:16:24 +0100 Message-ID: <20250310021652.17530-19-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5451607350880166626 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekuddvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepieduhffggeetffekfeeuffdujeevjedvudejkeeilefhjeetjeeuudefudejgfdunecuffhomhgrihhnpehoshhgvghordhorhhgnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutdefnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehkedumgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=eIMFZzElGirzmKlEM8xkikxo7kA+RE+sBoreC7Q7JiY=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573032; v=1; b=nRjzlpor2ZLPhi6Vbc5zDY/4m/1ojLn7icikkQWtlVT3ggOMFFAldw5zYVsd+LAvWjUBm38Z aKOzXplqvKBp2+UNlMYNMY0NVc6h1x067RYWLvtVYw4Ki4gpzAaEI+U4PT5KlZ1QMokRT2qPUZn 7fufL8tD+1ugFPhkKOiGduB+cp/euswRum3TKSrMxGaBZ8G+c+WWZIZck+Il/rXdbGQMyFE/9oS ZYWMyrpSHWJed0bH1h7L8E7AEZ+zcDpjQdPVv7GfbyNLVsL3mLBeNPkF42ic4EuwBkYGTGYE1CX F93Ds/l28pSJ/LpzOKK+k5rdKHwawU/jCxph7KIVqrEJA== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/geo.scm (gdal): Update to 3.10.2. [source]: Bundle zlib back, as it's now using a custom fork. [arguments]: Add 'patch-runpath phase and {modules} in order to patch the runpaths of the swig generated python bindings. Improve style. [inputs]: Add gcc:lib, hdf5, librasterlite2, libspatialite. [native-inputs]: Add bison. --- gnu/packages/geo.scm | 66 ++++++++++++++++++++++++++++++-------------- 1 file changed, 45 insertions(+), 21 deletions(-) diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm index 251ef5ced9..7e9b1da2e3 100644 --- a/gnu/packages/geo.scm +++ b/gnu/packages/geo.scm @@ -1408,46 +1408,69 @@ (define-public pdal (define-public gdal (package (name "gdal") - (version "3.6.1") + (version "3.10.2") (source (origin (method url-fetch) (uri (string-append - "http://download.osgeo.org/gdal/" version "/gdal-" - version ".tar.gz")) + "http://download.osgeo.org/gdal/" version "/gdal-" + version ".tar.gz")) (sha256 (base32 - "1qckwnygszxkkq40bf87s3m1sab6jj9jyakdvskh0qf7dq8zjarf")) + "1nmh92vbcrp9qnld98vkxsvaw0mrska06kxxbn7n6kgbh6mhlwfa")) (modules '((guix build utils))) (snippet - `(begin - ;; TODO: frmts contains a lot more bundled code. - (for-each delete-file-recursively - ;; bundled code - '("frmts/png/libpng" - "frmts/gif/giflib" - "frmts/jpeg/libjpeg" - "frmts/jpeg/libjpeg12" - "frmts/gtiff/libtiff" - "frmts/gtiff/libgeotiff" - "frmts/zlib" - "ogr/ogrsf_frmts/geojson/libjson")))))) + `(begin + ;; TODO: frmts contains a lot more bundled code. + (for-each delete-file-recursively + ;; bundled code + '("frmts/png/libpng" + "frmts/gif/giflib" + "frmts/jpeg/libjpeg" + "frmts/jpeg/libjpeg12" + "frmts/gtiff/libtiff" + "frmts/gtiff/libgeotiff" + "ogr/ogrsf_frmts/geojson/libjson")))))) (build-system cmake-build-system) (arguments - `(#:tests? #f - #:configure-flags - (list "-DGDAL_USE_INTERNAL_LIBS=WHEN_NO_EXTERNAL" - "-DGDAL_USE_JPEG12_INTERNAL=OFF"))) + (list + #:tests? #f + #:configure-flags '(list "-DGDAL_USE_INTERNAL_LIBS=WHEN_NO_EXTERNAL" + "-DGDAL_USE_JPEG12_INTERNAL=OFF") + #:modules '((guix build cmake-build-system) + (guix build gremlin) + (guix build utils) + (srfi srfi-26)) + #:phases + #~(modify-phases %standard-phases + (add-before 'strip 'patch-runpath + (lambda* (#:key inputs #:allow-other-keys) + (for-each + (cut set-file-runpath <> + (list (string-append #$output "/lib") + (dirname (search-input-file + inputs "/lib/libgcc_s.so")) + (dirname (search-input-file + inputs "/lib/libc.so.6")))) + (find-files + #$output + (lambda (file stat) + (and (string-suffix? ".so" file) + (string-contains file "site-packages")))))))))) (inputs (list curl expat freexl + `(,gcc "lib") geos giflib + hdf5 json-c libgeotiff libjpeg-turbo libjxl libpng + librasterlite2 + libspatialite libtiff libwebp lz4 @@ -1463,7 +1486,8 @@ (define-public gdal zlib zstd)) (native-inputs - (list pkg-config + (list bison + pkg-config python)) (propagated-inputs (list python-numpy)) -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:32 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:32 +0000 Received: from localhost ([127.0.0.1]:35442 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShv-0001GK-Er for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:31 -0400 Received: from 10.mo575.mail-out.ovh.net ([46.105.79.203]:45379) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShg-0001C8-8V for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:17 -0400 Received: from director5.ghost.mail-out.ovh.net (unknown [10.108.9.32]) by mo575.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0s71xHwz1l80 for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:15 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-vjd7j (unknown [10.108.42.203]) by director5.ghost.mail-out.ovh.net (Postfix) with ESMTPS id BB46E1FD6B; Mon, 10 Mar 2025 02:17:14 +0000 (UTC) Received: from ngraves.fr ([37.59.142.99]) by ghost-submission-5b5ff79f4f-vjd7j with ESMTPSA id jo/5EKpLzmdJxQIAiaEQXg (envelope-from ); Mon, 10 Mar 2025 02:17:14 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-99G00332253f0e-efe7-474c-9a1b-a668518d8539, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 21/40] gnu: sphinx-5: Ignore failing test. 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They are harmless. " and not test_additional_targets_should_not_be_translated" - " and not test_additional_targets_should_be_translated")) + " and not test_additional_targets_should_be_translated" + ;; As in Sphinx@6: + ;; AssertionError: assert...list of weak references to the object... + " and not test_autodoc_default_options")) #:phases '(modify-phases %standard-phases (add-before 'check 'pre-check -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:32 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:32 +0000 Received: from localhost ([127.0.0.1]:35446 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShv-0001GS-Vi for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:32 -0400 Received: from 3.mo576.mail-out.ovh.net ([188.165.52.203]:55663) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShg-0001Bz-Me for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:18 -0400 Received: from director1.ghost.mail-out.ovh.net (unknown [10.108.2.89]) by mo576.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0s56jhxz1r9d for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:13 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-rhrd5 (unknown [10.108.54.148]) by director1.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 81A221FD37; Mon, 10 Mar 2025 02:17:13 +0000 (UTC) Received: from ngraves.fr ([37.59.142.96]) by ghost-submission-5b5ff79f4f-rhrd5 with ESMTPSA id k4eBEKlLzmfAIQMA9vCeAg (envelope-from ); Mon, 10 Mar 2025 02:17:13 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-96R001f3d67c7a-fef1-491b-877c-36370f1ca292, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 20/40] gnu: python-docutils-0.15: Update to 0.16. 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[native-inputs]: Replace python-setuptools-57 by python-setuptools. * gnu/packages/python-web.scm (awscli)[inputs]: Update accordingly. * gnu/packages/sphinx.scm (python-sphinx-panels)[propagated-inputs]: Update accordingly. --- gnu/packages/python-web.scm | 2 +- gnu/packages/python-xyz.scm | 10 +++++----- gnu/packages/sphinx.scm | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 77a4e5c8f1..42f98df644 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -5165,7 +5165,7 @@ (define-public awscli (list groff-minimal python-botocore python-colorama - python-docutils-0.15 + python-docutils-0.16 python-pyyaml python-rsa python-s3transfer)) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 558131fee6..72906d7b37 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -7835,21 +7835,21 @@ (define-public python-docutils ;; licensed under the PFSL, BSD 2-clause, and GPLv3+ licenses. (license (list license:public-domain license:psfl license:bsd-2 license:gpl3+)))) -;; awscli refuses to be built with docutils < 0.16. -(define-public python-docutils-0.15 +;; awscli refuses to be built with docutils < 0.17. +(define-public python-docutils-0.16 (package (inherit python-docutils) - (version "0.15") + (version "0.16") (source (origin (method url-fetch) (uri (pypi-uri "docutils" version)) (sha256 (base32 - "0ja8q6mdj6xv62jjw3phv8j5nfqi5x8hnfy4pqfcjcgz4b34k8sl")))) + "1z3qliszqca9m719q3qhdkh0ghh90g500avzdgi7pl77x5h3mpn2")))) ;; tests contain Python 2 syntax. (arguments '(#:tests? #false)) (native-inputs - (list python-setuptools-57)))) + (list python-setuptools)))) (define-public python-docx (package diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm index 58952049a1..239a2cc780 100644 --- a/gnu/packages/sphinx.scm +++ b/gnu/packages/sphinx.scm @@ -597,7 +597,7 @@ (define-public python-sphinx-panels (substitute* "setup.py" (("sphinx>=2,<5") "sphinx>=2,<6"))))))) - (propagated-inputs (list python-docutils-0.15 python-sphinx-5)) + (propagated-inputs (list python-docutils-0.16 python-sphinx-5)) (native-inputs (list python-pytest python-pytest-regressions -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:33 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:33 +0000 Received: from localhost ([127.0.0.1]:35448 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShw-0001Gl-Ot for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:33 -0400 Received: from 7.mo583.mail-out.ovh.net ([178.32.124.100]:51317) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShh-0001CQ-O7 for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:18 -0400 Received: from director2.ghost.mail-out.ovh.net (unknown [10.109.148.29]) by mo583.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0s81Z11z1S2B for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:16 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-82vbn (unknown [10.110.118.167]) by director2.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 015201FD65; Mon, 10 Mar 2025 02:17:15 +0000 (UTC) Received: from ngraves.fr ([37.59.142.106]) by ghost-submission-5b5ff79f4f-82vbn with ESMTPSA id U8i/MatLzmevFR8AJvcgiQ (envelope-from ); Mon, 10 Mar 2025 02:17:15 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-106R0062dfeac25-abca-472c-b162-4b11ea375ebb, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 22/40] gnu: python-importlib-resources: Update python-setuptools input. Date: Mon, 10 Mar 2025 03:16:27 +0100 Message-ID: <20250310021652.17530-22-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5452733249234395874 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekuddvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutdeinecuvehluhhsthgvrhfuihiivgepvdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehkeefmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=bpH30mX/bGbiVOwS+1XlTilw8hQCZR3VjUtgoaInDB8=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573036; v=1; b=LLIoPo1J4E2q2i2frjzi3t6RdLEtV55xwk/RXSWnVbTmdWdZT2njHE2e4ZOcmmhWXhkSwIuc ixgPfP4NRD6o9gtusxz0i7Im4o9FwxxzZ3RzEwbMbZHIWES5fe6Go3nvbQex8ndrun5d2gqlCi1 AJA8/Y5S3qNmfpqEd2qd0ov7jnbFu/2gyUP9P4ogkSv65PebKUpEzwNzZ95ZPxxU/RCwUQsbkkt 3dxO7BgFTljm3MWczQoCOk2VEiS4eBVDeSb2xgaRWRV3XnxxTlE/Ei6r8nCB7NyIYTdTFCexIoU I2UANDBB3FQmAy4dkvE0EXml5Tk6KA6jRODrhfZ2iWzuA== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-xyz.scm (python-importlib-resource) [native-inputs]: Replace python-setuptools-57 by python-setuptools. --- gnu/packages/python-xyz.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 72906d7b37..ace13dd419 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -12913,7 +12913,7 @@ (define-public python-importlib-resources python-pytest-enabler python-pytest-flake8 python-pytest-mypy - python-setuptools-57 + python-setuptools python-setuptools-scm)) (propagated-inputs (list python-zipp)) -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:33 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:33 +0000 Received: from localhost ([127.0.0.1]:35450 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShx-0001Gt-6k for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:33 -0400 Received: from 5.mo560.mail-out.ovh.net ([87.98.181.248]:34733) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShi-0001Ch-Ia for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:19 -0400 Received: from director7.ghost.mail-out.ovh.net (unknown [10.109.139.72]) by mo560.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0s8728Gz1f5w for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:16 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-rx4px (unknown [10.110.113.175]) by director7.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 9B43A1FE5C; Mon, 10 Mar 2025 02:17:16 +0000 (UTC) Received: from ngraves.fr ([37.59.142.106]) by ghost-submission-5b5ff79f4f-rx4px with ESMTPSA id yfQmH6xLzmd4kgAAlWKOdA (envelope-from ); Mon, 10 Mar 2025 02:17:16 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-106R006d75ac66d-4b53-40e9-8bab-0d4947aa3dca, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 23/40] gnu: python-louvain: Use pyproject-build-system. Date: Mon, 10 Mar 2025 03:16:28 +0100 Message-ID: <20250310021652.17530-23-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5452733249735746274 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekudduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepvdehleeiffehtedvlefhffffjeefgfduhfetkeevheeiteduiedugfekuedtheejnecuffhomhgrihhnpehgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddruddtieenucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheeitdgmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=zEPrCrNkDdTVXbBmX+pMHuTJNI5OJ6O9jo2EwSqRdWM=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573037; v=1; b=zQVuBfpM+REYeVbdF635l+VluswzWcNd0AxFenc2pTOgjNfKxnZBgx721syEQnnY10fY80sc 6jr/I9bK688xR5FEkhpzdrnMPjUjXyHfepbR6bnm+sLOTbl6Hj06ej95ksXDCbFSZ7KIzuxnOEC EAcOVk7G+xAxA2Oei298UjO2oKP6gyd7X05XkeVMf0miUUavBl16ZGNVUmKztUoABi5EWlFJmk1 +f1KdLfQ4ek/fO/6rW5T5lXBpMNILxO7Jm2w5sYd6X9ayTf1QCV4PL9uYcKEyZxr0LbaT7HM35Y BHdktwzxcuKc6t6giUCidYXiSiD0h+T8Ng0HWc7ccYOtQ== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/graph.scm (python-louvain) [build-system]: Switch from python-build-system to pyproject-build-system. [native-inputs]: Replace python-setuptools-57 by python-setuptools. Add python-wheel. --- gnu/packages/graph.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm index f29a71c0d7..22fbf07229 100644 --- a/gnu/packages/graph.scm +++ b/gnu/packages/graph.scm @@ -388,9 +388,9 @@ (define-public python-louvain (patches (search-patches "python-louvain-fix-test.patch")) (sha256 (base32 "0sx53l555rwq0z7if8agirjgw4ddp8r9b949wwz8vlig03sjvfmp")))) - (build-system python-build-system) + (build-system pyproject-build-system) (native-inputs - (list python-setuptools-57)) ;for use_2to3 support + (list python-setuptools python-wheel)) (propagated-inputs (list python-networkx python-numpy)) (home-page "https://github.com/taynaud/python-louvain") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:34 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:34 +0000 Received: from localhost ([127.0.0.1]:35454 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShx-0001H2-Ja for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:33 -0400 Received: from 4.mo583.mail-out.ovh.net ([178.33.111.247]:47841) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShj-0001D3-Fn for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:20 -0400 Received: from director3.ghost.mail-out.ovh.net (unknown [10.108.25.16]) by mo583.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0s96lQFz1S5V for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:17 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-tjd7f (unknown [10.110.113.35]) by director3.ghost.mail-out.ovh.net (Postfix) with ESMTPS id A60F81FD39; Mon, 10 Mar 2025 02:17:17 +0000 (UTC) Received: from ngraves.fr ([37.59.142.107]) by ghost-submission-5b5ff79f4f-tjd7f with ESMTPSA id alSEHa1Lzmdi8A4ANLIjuQ (envelope-from ); Mon, 10 Mar 2025 02:17:17 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-107S001206d3073-d96d-4d5c-a1b0-da4a257256d9, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 24/40] gnu: Remove python-setuptools-57. Date: Mon, 10 Mar 2025 03:16:29 +0100 Message-ID: <20250310021652.17530-24-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5453014725397766882 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekuddvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepleffjeetueethfefkeffffefvddukeejkefgleduiedthfekvefhiedvhfffgeegnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutdejnecuvehluhhsthgvrhfuihiivgepfeenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehkeefmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=cWVKB9/o7lmh9g8snfIntaOasfm/EjLD/pIkblsXusU=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573038; v=1; b=HeUATidFgPH/ZnsYSTlDXsg5e5I5qOihc/tmCkUrE0ai1XL5JslrRzBOnPvlTj8VQrojLdKT trJ98GDDdAukyrOACgxf8KbxFToa3oXo6eL7L6aQ0oZO2Qyi4voSU/lMf5cH4pr5Z8yDDUR4Hov OuDhugDOhr36ahI7V9eg5Xi2PdPyRB90OawHW2e3U/ik1aSBPzwnirZolG1C6xTJqAkTOJujwzx Fvzm2iN8oLd7wiGNsOWFwB4vzVRTXyhS3Z1Yhojr7jd5+0czhGPVtnRcUUSYQaqkSaC7e/rUvbF xMFaFKuV/9mRAsdfeJsdeiXyJnJptell8JiA0IfhBIvnw== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-build.scm (python-setuptools-57): Delete variable. --- gnu/packages/python-build.scm | 12 ------------ 1 file changed, 12 deletions(-) diff --git a/gnu/packages/python-build.scm b/gnu/packages/python-build.scm index 6bea44fee6..85115afe25 100644 --- a/gnu/packages/python-build.scm +++ b/gnu/packages/python-build.scm @@ -344,18 +344,6 @@ (define-public python-setuptools license:asl2.0 ;packaging is dual ASL2/BSD-2 license:bsd-2)))) -;; This is the last version with use_2to3 support. -(define-public python-setuptools-57 - (package - (inherit python-setuptools) - (version "57.5.0") - (source (origin - (inherit (package-source python-setuptools)) - (uri (pypi-uri "setuptools" version)) - (sha256 - (base32 - "091sp8lrin7qllrhhx7y0iiv5gdb1d3l8a1ip5knk77ma1njdlyr")))))) - (define-public python-wheel (package (name "python-wheel") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:34 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:34 +0000 Received: from localhost ([127.0.0.1]:35456 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShy-0001HC-1a for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:34 -0400 Received: from 17.mo581.mail-out.ovh.net ([188.165.35.227]:52275) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShk-0001DH-B4 for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:21 -0400 Received: from director2.ghost.mail-out.ovh.net (unknown [10.109.139.72]) by mo581.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0sB6G3lz1J58 for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:18 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-x2q2r (unknown [10.110.178.103]) by director2.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 979ED1FD87; Mon, 10 Mar 2025 02:17:18 +0000 (UTC) Received: from ngraves.fr ([37.59.142.108]) by ghost-submission-5b5ff79f4f-x2q2r with ESMTPSA id BnTmGa5LzmdcoigACxjVtQ (envelope-from ); Mon, 10 Mar 2025 02:17:18 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-108S002ffb77e1f-b26e-40f5-ab0e-bc8769ca248d, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 25/40] gnu: python-dpath: Update to 2.2.0. Date: Mon, 10 Mar 2025 03:16:30 +0100 Message-ID: <20250310021652.17530-25-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5453296200016585442 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekuddvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepvdehleeiffehtedvlefhffffjeefgfduhfetkeevheeiteduiedugfekuedtheejnecuffhomhgrihhnpehgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddruddtkeenucevlhhushhtvghrufhiiigvpedunecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheekudgmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=2S8Lqdml4jOEbxykDrI/rbRmCRHNu7d3Hp4VkV6N/gQ=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573038; v=1; b=VTNhB5pJvfU9WH1Gho418nqwSohXs0l1hy3426r7P/d/vp0tlDKgk95+56ZYhxfVVk0TBa4Z ejrKT5ALLHvgkFaNuwP8eYcPFCoLMRp9vHl1hi1jXSaRWG1rSkjjENECLbcmXuEzS9aMa3JiVR2 zdeJS+MILLOuj9FNSzRDJs1P+2eHA+/AuiSzvVPNv2rYNLZ+Rd7cxSiTv/Duyvr9vgEx+2Cl4ts PYYes8rO9dbB2TgEJediRgEkXOk+GPJb/ChuvdsUCmU3sgP/8+aikLz+FqjLk5WuZZFryoL5fdx 1+8ole7hrF1nxKeF+JvX8V7f3/pP/RWmeszfTvLF+hdGw== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-xyz.scm (python-dpath): Update to 2.2.0. [source]: Switch to git-fetch. [build-system]: Switch from python-build-system to pyproject-build-system. [native-inputs]: Remove python-mock. Replace python-nose by python-nose2. Add python-setuptools and python-wheel. --- gnu/packages/python-xyz.scm | 27 ++++++++++++--------------- 1 file changed, 12 insertions(+), 15 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index ace13dd419..58b2436f7a 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -34488,25 +34488,22 @@ (define-public python-dparse (define-public python-dpath (package (name "python-dpath") - (version "2.0.1") + (version "2.2.0") (source (origin - (method url-fetch) - (uri (pypi-uri "dpath" version)) + (method git-fetch) + (uri (git-reference + (url "https://github.com/akesterson/dpath-python") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 - (base32 - "1ymi9ssk7i0mx3mviplf4csfvzibdd6wyj4qzj6s487n9xgnp85y")))) - (build-system python-build-system) + (base32 "1rxgkn2dzakwdw5idkx0092yrmf46zcqx3xp87xksvxpzbsvz4nf")))) + (build-system pyproject-build-system) (native-inputs - (list python-hypothesis python-mock python-nose)) - (arguments - '(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key inputs outputs #:allow-other-keys) - (add-installed-pythonpath inputs outputs) - ;; This invocation is taken from tox.ini. - (invoke "nosetests" "-d" "-v" "tests/")))))) + (list python-hypothesis + python-nose2 + python-setuptools + python-wheel)) (home-page "https://github.com/akesterson/dpath-python") (synopsis "File-system-like pathing and searching for dictionaries") (description -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:35 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:35 +0000 Received: from localhost ([127.0.0.1]:35460 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShy-0001HJ-Ec for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:35 -0400 Received: from 16.mo582.mail-out.ovh.net ([87.98.139.208]:54845) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShl-0001De-CK for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:22 -0400 Received: from director5.ghost.mail-out.ovh.net (unknown [10.109.176.202]) by mo582.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0sC682Vz1QT8 for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:19 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-nw7f9 (unknown [10.110.96.102]) by director5.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 832801FD84; Mon, 10 Mar 2025 02:17:19 +0000 (UTC) Received: from ngraves.fr ([37.59.142.107]) by ghost-submission-5b5ff79f4f-nw7f9 with ESMTPSA id t+RNGK9Lzmc4OgAA5U0qNg (envelope-from ); Mon, 10 Mar 2025 02:17:19 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-107S001e7399ef2-a666-493c-8bb4-c3b9bbb94ce5, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 26/40] gnu: python-yte: Update to 1.7.0. 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#:allow-other-keys) + (when tests? + (invoke "python" "tests.py"))))))) + (native-inputs (list python-numpy python-poetry-core python-pytest)) + (propagated-inputs (list python-dpath python-plac python-pyyaml)) (home-page "https://github.com/koesterlab/yte") (synopsis "YAML template engine with Python expressions") (description -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:36 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:36 +0000 Received: from localhost ([127.0.0.1]:35464 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trShz-0001HY-JI for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:36 -0400 Received: from 5.mo561.mail-out.ovh.net ([87.98.178.36]:53451) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShm-0001E3-NW for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:23 -0400 Received: from director10.ghost.mail-out.ovh.net (unknown [10.108.2.89]) by mo561.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0sF0zgJz1Qpf for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:21 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-d5q6x (unknown [10.108.54.36]) by director10.ghost.mail-out.ovh.net (Postfix) with ESMTPS id C28211FD97; Mon, 10 Mar 2025 02:17:20 +0000 (UTC) Received: from ngraves.fr ([37.59.142.111]) by ghost-submission-5b5ff79f4f-d5q6x with ESMTPSA id Wqi/ILBLzmfxtSgA55liXg (envelope-from ); Mon, 10 Mar 2025 02:17:20 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-111S0055a377f32-4a75-4dd0-8ae8-ab9a1189ee70, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 27/40] gnu: Add python-argparse-dataclass. 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(license license:expat))) +(define-public python-argparse-dataclass + (package + (name "python-argparse-dataclass") + (version "2.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "argparse_dataclass" version)) + (sha256 + (base32 "0zr9r4n00x2wi5kyzw3bxvrdp5k113jw7f9p4f414bsaj4f69aq9")))) + (build-system pyproject-build-system) + (native-inputs (list python-setuptools python-wheel)) + (home-page "https://github.com/mivade/argparse_dataclass") + (synopsis "Declarative CLIs with argparse and dataclasses") + (description + "This package provides declarative CLIs with argparse and dataclasses.") + (license license:expat))) + (define-public python-argparse-manpage (package (name "python-argparse-manpage") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:36 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:36 +0000 Received: from localhost ([127.0.0.1]:35466 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trSi0-0001Hl-8w for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:36 -0400 Received: from 10.mo576.mail-out.ovh.net ([46.105.73.241]:42067) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShn-0001E9-6H for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:24 -0400 Received: from director6.ghost.mail-out.ovh.net (unknown [10.108.9.148]) by mo576.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0sF4wkXz1rYy for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:21 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-57mj8 (unknown [10.110.118.228]) by director6.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 83E441FDEC; Mon, 10 Mar 2025 02:17:21 +0000 (UTC) Received: from ngraves.fr ([37.59.142.103]) by ghost-submission-5b5ff79f4f-57mj8 with ESMTPSA id B0J2GLFLzmfUEhIAXeKtsg (envelope-from ); Mon, 10 Mar 2025 02:17:21 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-103G0052d574620-0206-4488-8499-caf5d3660704, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 28/40] gnu: Add python-snakemake-interface-common. Date: Mon, 10 Mar 2025 03:16:33 +0100 Message-ID: <20250310021652.17530-28-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5454140623927042786 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekuddvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepvdehleeiffehtedvlefhffffjeefgfduhfetkeevheeiteduiedugfekuedtheejnecuffhomhgrihhnpehgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddruddtfeenucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheejiegmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=YIqZxUafn5AEP6J5vMoh/T8Lm8f3ksFKrObqZekYY2c=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573041; v=1; b=ZcGxTWNI0wb5hslp6Ls0OCWsem0XpEzfbSuKthLB2BTZFidh4fEbP6IMOnsRKHK89muE0/Hm U7IAOy5ZR9LadGBnt+bly+GB2gsqzfUYM5q9aH9JGbAbOhy1yJ0zkek7eeXsN7GG9xUE2tiL8WO TbMd6FXWCcP5D6qLD93wRz1EdVU/QAOaF5B9lTsHh8eVr8ASQIzuwMEH3xs+d3RcnOphfE+F1vm Bbhh+WxZSlRp5d8yTp01rwIyutsRk8CSZJQq2uSKQhKpgDMdpanlJEWBbQ15mYFcH+VlOKkmwvv akmmG1r+qTsB7EVuLCthM1I56HPm1NWzfUyGwCl9gtT1g== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-science.scm (python-snakemake-interface-common): New variable. --- gnu/packages/python-science.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index ca259356cf..d0a354a8c6 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -933,6 +933,35 @@ (define-public python-scikit-survival cross-validation.") (license license:gpl3+)))) +(define-public python-snakemake-interface-common + (package + (name "python-snakemake-interface-common") + (version "1.17.4") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/snakemake/snakemake-interface-common") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "19fyqs048zdvrmq5sdayzch850kwsyv2x6xn57cjjzcm4zpjrh9w")))) + (build-system pyproject-build-system) + (arguments + (list #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python3" "tests/tests.py"))))))) + (native-inputs (list python-poetry-core python-pytest)) + (propagated-inputs (list python-argparse-dataclass python-configargparse)) + (home-page "https://github.com/snakemake/snakemake-interface-common") + (synopsis "Common functions and classes for Snakemake and its plugins") + (description "This package provides common functions and classes +for Snakemake and its plugins.") + (license license:expat))) + (define-public python-tdda (package (name "python-tdda") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:37 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:37 +0000 Received: from localhost ([127.0.0.1]:35468 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trSi0-0001Hs-Oz for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:37 -0400 Received: from 12.mo550.mail-out.ovh.net ([87.98.162.229]:49993) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trSho-0001EJ-4E for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:25 -0400 Received: from director3.ghost.mail-out.ovh.net (unknown [10.109.148.178]) by mo550.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0sG3wxhz1VV4 for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:22 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-fwqqf (unknown [10.108.54.36]) by director3.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 547221FD39; Mon, 10 Mar 2025 02:17:22 +0000 (UTC) Received: from ngraves.fr ([37.59.142.105]) by ghost-submission-5b5ff79f4f-fwqqf with ESMTPSA id CVeeBrJLzmeRNwIAvUEd9Q (envelope-from ); Mon, 10 Mar 2025 02:17:22 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-105G006d69ebc50-080a-44b2-9161-0944409b4d48, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 29/40] gnu: Add python-snakemake-interface-executor-plugins. Date: Mon, 10 Mar 2025 03:16:34 +0100 Message-ID: <20250310021652.17530-29-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5454422100570727138 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekudduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepvdehleeiffehtedvlefhffffjeefgfduhfetkeevheeiteduiedugfekuedtheejnecuffhomhgrihhnpehgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddruddtheenucevlhhushhtvghrufhiiigvpedvnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheehtdgmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=7k3PwCsZPzLdZiRhWGClBV393/ykhW2hTr0oX571Sr0=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573042; v=1; b=IsbfbdKYU5CFz+sUbwzFxb1u0sjA7J3ojQOdg7BK1KeTGhEjJ/BNR74ipFYK2zu/JIJCpRPj vxl/7Xg4CXtsE2Ux1eDkGkBnkNi+ziWRVw1vjfmPaAqewL/3+D7F8d4OKvHIgRrk0J6xl5v1Akw ud7BkXkZVKwkDyt/oL8pMkzM8pEqbncQJedvVfONpmd1f/Bvm/xjv3MU8LtKa6BK8vF8uDTQwke FSETPTCZXagivS9APTdzJETnF61itAcX1l9xDLPlyp2e9LZgb4pXlZv3OpYI1y+e6tfEshUMN6k pAaaRt+0oG9nqzfoZksQ1D6QdB7c+KcsIU8Fe4L2ZAukA== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-science.scm (python-snakemake-interface-executor-plugins): New variable. --- gnu/packages/python-science.scm | 34 +++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index d0a354a8c6..54b04abf71 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -962,6 +962,40 @@ (define-public python-snakemake-interface-common for Snakemake and its plugins.") (license license:expat))) +(define-public python-snakemake-interface-executor-plugins + (package + (name "python-snakemake-interface-executor-plugins") + (version "9.3.3") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "\ +https://github.com/snakemake/snakemake-interface-executor-plugins") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1kjjcgkk1rbavb687x5ayw35ayhsnhpg9262k317x911wqpsj2fm")))) + (build-system pyproject-build-system) + (arguments + (list #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python3" "tests/tests.py"))))))) + (propagated-inputs (list python-argparse-dataclass + python-snakemake-interface-common + python-throttler)) + (native-inputs (list python-poetry-core python-pytest)) + (home-page "\ +https://github.com/snakemake/python-snakemake-interface-executor-plugins") + (synopsis "Interface for Snakemake executor plugins") + (description + "This package provides a stable interface for interactions between Snakemake and +its executor plugins.") + (license license:expat))) + (define-public python-tdda (package (name "python-tdda") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:37 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:37 +0000 Received: from localhost ([127.0.0.1]:35470 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trSi1-0001I4-7h for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:37 -0400 Received: from 5.mo575.mail-out.ovh.net ([46.105.62.179]:60781) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trSho-0001EY-SO for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:25 -0400 Received: from director7.ghost.mail-out.ovh.net (unknown [10.108.2.89]) by mo575.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0sH2Qnnz1l80 for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:23 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-6gphg (unknown [10.110.164.75]) by director7.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 184411FE5E; Mon, 10 Mar 2025 02:17:23 +0000 (UTC) Received: from ngraves.fr ([37.59.142.108]) by ghost-submission-5b5ff79f4f-6gphg with ESMTPSA id 3cr3N7JLzmd40B8AC31h2A (envelope-from ); Mon, 10 Mar 2025 02:17:23 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-108S0029e5ecabc-0a1d-424b-9cd5-0c777c4fe6de, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 30/40] gnu: Add python-snakemake-interface-report-plugins. Date: Mon, 10 Mar 2025 03:16:35 +0100 Message-ID: <20250310021652.17530-30-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5454703574571344610 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekuddvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepvdehleeiffehtedvlefhffffjeefgfduhfetkeevheeiteduiedugfekuedtheejnecuffhomhgrihhnpehgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddruddtkeenucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheejhegmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=FzDLpN2/Hj4FP2qOrR5tavEhWS+cIXsFGdpGyhnYYL4=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573043; v=1; b=MIwDaAoPcMyffHifV11uFrD/du+fH4IhMA+Xo92hpSIlCYlF0E7Q7m+eYunGR19kbsBNgH1/ Yb2YG+4Zq7QD92St/NiHswLh2XWXxLjgW8jQsT6L4m54149gWNFK/vLjMuTVSjPo8zv6FPKxSo+ pOCi+bqRQUHym/OyGR1BdzmubZsl0CQ85AmQYKbsWnX/YnObY37lO+57o5Kf7ueFFFceWuMyjVq EPhq9Y0/2EWsu0OvbFllgKZxNWbGb83NE9NXPSXAfm9qSD+ie2hUfiqVMlmmx2nbBST9GkxU47t 3/+dOVH5stzqH+n7S4Z3UK4lWjDPewHG5hoNgl1COg3fw== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-science.scm (python-snakemake-interface-report-plugins): New variable. --- gnu/packages/python-science.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 54b04abf71..41ce2a3689 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -996,6 +996,38 @@ (define-public python-snakemake-interface-executor-plugins its executor plugins.") (license license:expat))) +(define-public python-snakemake-interface-report-plugins + (package + (name "python-snakemake-interface-report-plugins") + (version "1.1.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "\ +https://github.com/snakemake/snakemake-interface-report-plugins") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0i6z9vk6nv2m3jsym0glrb7h9isdlfza2yq14vbqcslybdi9ykfa")))) + (build-system pyproject-build-system) + (arguments + (list #:tests? #f ;XXX: Circular dependency on snakemake + #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python3" "tests/tests.py"))))))) + (propagated-inputs (list python-snakemake-interface-common python-pytest)) + (native-inputs (list python-poetry-core)) + (home-page "\ +https://github.com/snakemake/python-snakemake-interface-report-plugins") + (synopsis "Interface for Snakemake report plugins") + (description "This package provides a stable interface for interactions +between Snakemake and its report plugins.") + (license license:expat))) + (define-public python-tdda (package (name "python-tdda") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:38 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:38 +0000 Received: from localhost ([127.0.0.1]:35472 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trSi1-0001I7-KU for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:38 -0400 Received: from 5.mo575.mail-out.ovh.net ([46.105.62.179]:54151) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShp-0001Ei-T1 for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:26 -0400 Received: from director9.ghost.mail-out.ovh.net (unknown [10.109.176.202]) by mo575.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0sJ6VXlz1lBk for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:24 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-cbs7c (unknown [10.110.178.72]) by director9.ghost.mail-out.ovh.net (Postfix) with ESMTPS id ABA201FD48; Mon, 10 Mar 2025 02:17:24 +0000 (UTC) Received: from ngraves.fr ([37.59.142.102]) by ghost-submission-5b5ff79f4f-cbs7c with ESMTPSA id twK2H7RLzmdTcBEAYFUH/w (envelope-from ); Mon, 10 Mar 2025 02:17:24 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-102R004666cdeb4-28b2-4bd6-85dc-744210567563, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 32/40] gnu: Add python-snakemake-interface-storage-plugins. Date: Mon, 10 Mar 2025 03:16:37 +0100 Message-ID: <20250310021652.17530-32-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5454985049265070818 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekuddvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepvdehleeiffehtedvlefhffffjeefgfduhfetkeevheeiteduiedugfekuedtheejnecuffhomhgrihhnpehgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddruddtvdenucevlhhushhtvghrufhiiigvpedvnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheejhegmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=cjX5xkujclqcJol65FlLiYFMJlhyWYH1/193sno0mP0=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573045; v=1; b=YXFipoBL9L7+IzxQbmA1Wi4VN8NqAro2RL/NnlaAXSJzFm8drX8SmWJBZKhwtIuPmgDER4++ odF/zw2FpjOS0X47NyklvY5Ri5kZxjp/A6VofxY8pW/jSnC0Yt6fMPwWMp5sFhO+EJp/LYYYrtF 5g//PHk7Kmaks7SBtcDhjwemOWTnpllivrrgl3D77gizCDPTLUA3YQGcV6ZbYNbvoSmHOiV22Bk OecdAG9DlqMer/gCJlRmJB/lM70Bq31p1lx8ZFnWHOIOfKekHgz+jbn981HYrIiw6ucrgpBjIzj z+tGBQ1pIdkoX2mg1AxFpWCC4Oe25h1iPvtdUr28VA0Dw== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-science.scm (python-snakemake-interface-storage-plugins): New variable. --- gnu/packages/python-science.scm | 34 +++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 3ac753f55e..ac16401254 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -1060,6 +1060,40 @@ (define-public python-snakemake-interface-software-deployment-plugins its software deployment plugins.") (license license:expat))) +(define-public python-snakemake-interface-storage-plugins + (package + (name "python-snakemake-interface-storage-plugins") + (version "3.3.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "\ +https://github.com/snakemake/snakemake-interface-storage-plugins") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "05n5xgwagb01nyzi8xfvp0nvdfl24lxidgksm7k86p68n1rijd5a")))) + (build-system pyproject-build-system) + (arguments + (list #:tests? #f ;XXX: Circular dependency on snakemake + #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python3" "tests/tests.py"))))))) + (propagated-inputs (list python-reretry python-snakemake-interface-common + python-throttler python-wrapt)) + (native-inputs (list python-poetry-core python-pytest)) + (home-page + "https://github.com/snakemake/snakemake-interface-storage-plugins") + (synopsis "Interface for Snakemake storage plugins") + (description + "This package provides a stable interface for interactions between +Snakemake and its storage plugins.") + (license license:expat))) + (define-public python-tdda (package (name "python-tdda") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:38 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:38 +0000 Received: from localhost ([127.0.0.1]:35474 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trSi2-0001IH-4Q for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:38 -0400 Received: from 8.mo560.mail-out.ovh.net ([188.165.52.147]:44909) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShp-0001Ee-KR for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:26 -0400 Received: from director9.ghost.mail-out.ovh.net (unknown [10.109.176.202]) by mo560.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0sJ0zZ3z1csH for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:24 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-57mj8 (unknown [10.110.101.69]) by director9.ghost.mail-out.ovh.net (Postfix) with ESMTPS id DF38C1FDF0; Mon, 10 Mar 2025 02:17:23 +0000 (UTC) Received: from ngraves.fr ([37.59.142.114]) by ghost-submission-5b5ff79f4f-57mj8 with ESMTPSA id yg84LrNLzmfgEhIAXeKtsg (envelope-from ); Mon, 10 Mar 2025 02:17:23 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-114S008833a9ec4-d0d5-4d13-bb59-72b2ce1f4e8e, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 31/40] gnu: Add python-snakemake-interface-software-deployment-plugins. Date: Mon, 10 Mar 2025 03:16:36 +0100 Message-ID: <20250310021652.17530-31-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5454985052146754274 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekudduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepvdehleeiffehtedvlefhffffjeefgfduhfetkeevheeiteduiedugfekuedtheejnecuffhomhgrihhnpehgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddruddugeenucevlhhushhtvghrufhiiigvpedunecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheeitdgmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=UxDmGlY08IXTSpUqILXSDztLIcjUE8p+amM6b6X63wk=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573044; v=1; b=DlfqcsMGA1bHib65E8AONO8ISJjhSQzlEz7BWN/h0B+XHzUfCi44/ul3gjREC4pLmpoBodUc Zuhkxejny2+Uqzrf5CHodz9grQILtw6SDj7MqAbsHoWi15nbJ0DN6sSxVJWX5nNSi9BbM8uz+1K 29grbLFqlWbEsGPJgDcHUk/rEB+9f5ksappPbZjO+LrTLwE2f23xVQPxX848CmF4s+tMxfIZ1td PnvgzBNLqDYnxpfNAcC/Uf9FP027Gw40qXmz+bcIWi2zyDdLUc5Lf06rIUR1G156wE8a2H8vggm ApZxQZWIp9NqCfiKtY9gMdI+PsdQQZ6nDtoi+kkkgxyRQ== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-science.scm (python-snakemake-interface-software-deployment-plugins): New variable. --- gnu/packages/python-science.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 41ce2a3689..3ac753f55e 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -1028,6 +1028,38 @@ (define-public python-snakemake-interface-report-plugins between Snakemake and its report plugins.") (license license:expat))) +(define-public python-snakemake-interface-software-deployment-plugins + (package + (name "python-snakemake-interface-software-deployment-plugins") + (version "0.6.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/snakemake/snakemake-interface-software-deployment-plugins") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0b4kkznfyfck9f92pkimhyl13ljisfn67rsilm1a5inq2ywpmxba")))) + (build-system pyproject-build-system) + (arguments + (list #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python3" "tests/tests.py"))))))) + (propagated-inputs (list python-argparse-dataclass + python-snakemake-interface-common)) + (native-inputs (list python-poetry-core)) + (home-page "\ +https://github.com/snakemake/snakemake-interface-software-deployment-plugins") + (synopsis "Interface for Snakemake software deployment plugins") + (description + "This package provides a stable interface for interactions between Snakemake and +its software deployment plugins.") + (license license:expat))) + (define-public python-tdda (package (name "python-tdda") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:17:39 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:17:39 +0000 Received: from localhost ([127.0.0.1]:35476 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trSi2-0001IN-If for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:38 -0400 Received: from 6.mo581.mail-out.ovh.net ([188.165.39.218]:44959) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShr-0001Ev-47 for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:27 -0400 Received: from director11.ghost.mail-out.ovh.net (unknown [10.108.9.128]) by mo581.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0sL0lpMz1J58 for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:26 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-w6wtx (unknown [10.108.54.144]) by director11.ghost.mail-out.ovh.net (Postfix) with ESMTPS id CC5A91FEB4; Mon, 10 Mar 2025 02:17:25 +0000 (UTC) Received: from ngraves.fr ([37.59.142.112]) by ghost-submission-5b5ff79f4f-w6wtx with ESMTPSA id PoZTGrVLzmchCgIAYM+2vw (envelope-from ); Mon, 10 Mar 2025 02:17:25 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-112S0060601896f-c770-4b3a-809f-d0b63d0d16c2, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 33/40] gnu: Add python-throttler. Date: Mon, 10 Mar 2025 03:16:38 +0100 Message-ID: <20250310021652.17530-33-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5455548000493167330 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekuddvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepvdehleeiffehtedvlefhffffjeefgfduhfetkeevheeiteduiedugfekuedtheejnecuffhomhgrihhnpehgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddrudduvdenucevlhhushhtvghrufhiiigvpeefnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheekudgmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=h71u6ndRPCQqfkLjiDwJhk1n9/mRQZCy1+GgSI47O8M=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573046; v=1; b=CSuhJfMTs0BatVYBNpUijpbGYqLHJfZkq2GafUMAIi6Wmd2FmNnvsGE5iUsoq+pn+oiY8wBA 9NmmAG+0oeNbDaINyvr6DXmTXHXrtsR5K1K+6KTnfRB5bHvxVzfWdqDJo68rrsNq8O1Baw3V6WJ fVkWTfvlCNfaBn2wlQARfkRSL0ulh6R4z57Hg8g2OtTFdqMJSSzblWaXvS8APFk88dJaQVTzoyX ruqA02mZmuMfdEL4gElslIobWyiJtFl1jZ7Ft4+kkzQm+rmSER+OGrBrTb78dol7ArisCXDmL9q ZwAWflsd7RqrnVEDBdCgzHYR1JsmEe63/NntsuCkwSMig== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-xyz.scm (python-throttler): New variable. --- gnu/packages/python-xyz.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index c6d90fe1ac..540ea1b379 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -14869,6 +14869,33 @@ (define-public python-three-merge approach.") (license license:expat))) +(define-public python-throttler + (package + (name "python-throttler") + (version "1.2.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/uburuntu/throttler") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1gn21x0zkm7rr7qijlz7nvw7z0mm1j2r0r2lslg7wln1z36gjkbw")))) + (build-system pyproject-build-system) + (native-inputs (list python-aiohttp + python-pytest + python-pytest-asyncio + python-pytest-cov + python-setuptools + python-wheel)) + (home-page "https://github.com/uburuntu/throttler") + (synopsis "Throttling with asyncio support in Python") + (description + "This package provides a zero-dependency Python package for easy +throttling with asyncio support.") + (license license:expat))) + (define-public snakemake (package (name "snakemake") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:18:01 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:18:01 +0000 Received: from localhost ([127.0.0.1]:35482 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trSiP-0001JF-3g for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:18:01 -0400 Received: from 9.mo583.mail-out.ovh.net ([178.32.96.204]:38659) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShs-0001F9-HE for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:29 -0400 Received: from director1.ghost.mail-out.ovh.net (unknown [10.108.25.152]) by mo583.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0sM0BLVz1S4d for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:27 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-kz4cr (unknown [10.110.178.134]) by director1.ghost.mail-out.ovh.net (Postfix) with ESMTPS id ADEE81FD41; Mon, 10 Mar 2025 02:17:26 +0000 (UTC) Received: from ngraves.fr ([37.59.142.111]) by ghost-submission-5b5ff79f4f-kz4cr with ESMTPSA id wj+LILZLzmd78Q4A1IxV2Q (envelope-from ); Mon, 10 Mar 2025 02:17:26 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-111S0057a505e00-729b-4553-a81d-165d5bdbd93f, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 34/40] gnu: Add python-reretry. Date: Mon, 10 Mar 2025 03:16:39 +0100 Message-ID: <20250310021652.17530-34-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5455829477020000994 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekuddvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepvdehleeiffehtedvlefhffffjeefgfduhfetkeevheeiteduiedugfekuedtheejnecuffhomhgrihhnpehgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddrudduudenucevlhhushhtvghrufhiiigvpedunecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheekfegmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=Q7NtV4TXSqRhUd15xfr4+cgf4/KHYF8Ommjej/TMkNI=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573047; v=1; b=EYkAIeXZ+JonSIrrh1bqhQLMFRQl0cRDiQ7tfJ6qivjOuuDzmBggYtd/4SV4qfiX4+6ghCHT ESCnjPTcM+dbwTWx9X4eYhYHO4WMW0ItmH2HxZVaZcWgw2JOcHqjWwbTUl3XlQ4Gop+W4YMJPKA UFAIo/o3TOn5y/nEidUg5ibfZb4c4VjkGuiFDcccj2v7f7jzXCgMMEpIM4Lca1iU/yipFZv2cEX AIUS+pSBYSj+6aA7+t6wCM0c0G6Ts/usPiz6b2He3GTiymdwWcYaspzIL4McRQTDDd/lS7+MA62 8IybGcOplLGxzo1MyQubm71SPxcZCc8VOJWJxFg8zp0PA== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-xyz.scm (python-reretry): New variable. --- gnu/packages/python-xyz.scm | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 540ea1b379..a12edc7ab0 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -7895,6 +7895,25 @@ (define-public python-repoze-lru "This package provides a tiny LRU cache implementation and decorator.") (license license:bsd-4))) +(define-public python-reretry + (package + (name "python-reretry") + (version "0.11.8") + (source + (origin + (method url-fetch) + (uri (pypi-uri "reretry" version)) + (sha256 + (base32 "1qrjsjzah8gw1bciqn8bhrj80fjjg13qg8jks7qs4bjipv71yygj")))) + (build-system pyproject-build-system) + (native-inputs (list python-setuptools python-wheel)) + (home-page "https://github.com/leshchenko1979/reretry") + (synopsis "Python decorator for retrying on exceptions") + (description + "This provides an easy to use, but functional decorator for retrying on +exceptions.") + (license license:asl2.0))) + (define-public python-restructuredtext-lint (package (name "python-restructuredtext-lint") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:18:02 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:18:02 +0000 Received: from localhost ([127.0.0.1]:35484 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trSiP-0001JN-Ll for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:18:02 -0400 Received: from 16.mo550.mail-out.ovh.net ([178.33.104.224]:47273) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trSht-0001FV-5I for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:30 -0400 Received: from director8.ghost.mail-out.ovh.net (unknown [10.108.9.128]) by mo550.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0sN16r6z1VV4 for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:28 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-rx4px (unknown [10.110.113.149]) by director8.ghost.mail-out.ovh.net (Postfix) with ESMTPS id B54CA1FD31; Mon, 10 Mar 2025 02:17:27 +0000 (UTC) Received: from ngraves.fr ([37.59.142.97]) by ghost-submission-5b5ff79f4f-rx4px with ESMTPSA id xHgNILdLzmelkgAAlWKOdA (envelope-from ); Mon, 10 Mar 2025 02:17:27 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-97G00292132837-9bea-4816-b13b-405b29c50cae, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 35/40] gnu: Add python-conda-inject. Date: Mon, 10 Mar 2025 03:16:40 +0100 Message-ID: <20250310021652.17530-35-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5456110952388354786 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekudduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepvdehleeiffehtedvlefhffffjeefgfduhfetkeevheeiteduiedugfekuedtheejnecuffhomhgrihhnpehgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddrleejnecuvehluhhsthgvrhfuihiivgepgeenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehhedtmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=lF7cKR2q2zwF6Jqojg08wa9/VYRnUm53xUZxssDc/4I=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573048; v=1; b=DvK9iSL+PopybtGYN23uuvPAYiyklrCkasFyPWtV03gfNAf9ZYxri1nLNDrk2YxS+YzGG/AE Hu/FZ3ScGEN47X9VuyldyllrwrsXMv1c2R1v/TuAsiJfnCFHkjTeAISLOaaVTBGunq0LeF354Cu mswQoXjb0cLuQ2Vs6J0zKNwLBQN5IK8Kp/HRK+VeLupR/Ab4GpKHePajnkdBcT5nGbGKNu7AdQl sDHjTWYPW4YLlwLzXUkGKDo6u6Lkbx0r26+pmTbmy+ctNykMtiErLD9KbNyQQrTwEZP+n/7a3rW UTkdhzQ+repG7Xwf0B8bwd+uMtQ6ZbOEd9LcgkSUHj7EQ== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/package-management.scm (python-conda-inject): New variable. --- gnu/packages/package-management.scm | 32 +++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm index da50de8788..13cc7aa073 100644 --- a/gnu/packages/package-management.scm +++ b/gnu/packages/package-management.scm @@ -1123,6 +1123,38 @@ (define-public python-anaconda-client environments.") (license license:bsd-3))) +(define-public python-conda-inject + (package + (name "python-conda-inject") + (version "1.3.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/koesterlab/conda-inject") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1aig9l676wc2sjb20y7rdqf0hfcfjhh92yfiy82mf7kfnv7rp3rk")))) + (build-system pyproject-build-system) + (arguments + (list #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python3" "tests/tests.py"))))))) + (propagated-inputs (list python-pyyaml)) + (native-inputs (list python-poetry-core python-pytest)) + (home-page "https://github.com/koesterlab/conda-inject") + (synopsis + "Inject a conda environment into the current python environment") + (description + "This package provides helper functions for injecting a conda +environment into the current python environment (by modifying @code{sys.path}, +without actually changing the current python environment).") + (license license:expat))) + (define-public python-conda-package-handling (package (name "python-conda-package-handling") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:18:08 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:18:08 +0000 Received: from localhost ([127.0.0.1]:35486 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trSiQ-0001Ja-As for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:18:08 -0400 Received: from 8.mo581.mail-out.ovh.net ([46.105.77.114]:37085) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShu-0001Fw-Ac for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:31 -0400 Received: from director7.ghost.mail-out.ovh.net (unknown [10.108.25.152]) by mo581.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0sP201Hz1HCZ for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:29 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-68m45 (unknown [10.111.182.110]) by director7.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 022001FDED; Mon, 10 Mar 2025 02:17:28 +0000 (UTC) Received: from ngraves.fr ([37.59.142.112]) by ghost-submission-5b5ff79f4f-68m45 with ESMTPSA id dkyjJ7hLzmflEwAAdZqLTQ (envelope-from ); Mon, 10 Mar 2025 02:17:28 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-112S0068028d7bf-c50e-4a5b-af62-e3b9a21fe067, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 36/40] gnu: Add snakemake. Date: Mon, 10 Mar 2025 03:16:41 +0100 Message-ID: <20250310021652.17530-36-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5456392423789093602 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekuddvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfgggtgfesthekredtredtjeenucfhrhhomheppfhitgholhgrshcuifhrrghvvghsuceonhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrqeenucggtffrrghtthgvrhhnpeekgeduheetffefffeuudevgfegffejkefhheegleevtefgueduuedvjeefhfegueenucffohhmrghinheprhgvrgguthhhvgguohgtshdrihhonecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrdduuddvnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehkedumgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=F1rGNpJv/wQ3RbF6DRnauEIP+qMT8DNXmRkoFJkn9rk=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573049; v=1; b=yQqiWrdG46+/X7LbgEAp/R46wuI0u6LCnxHvwzoJONpvkW2ftFMwfvETOWdOAst+tYYczBE2 oH6Tl7cMyqxLLohpsdiZVvHvt3hiIeq450vz2NBe6E+VnZY0+g2+pH2UzpnvPbTUbohbheIlyUA L21uIt/YN7LsyX2sUwAt7MHZcZnbZWaBgYeV0BE/UKy0z7VSy1ZP7l1EJd4PgIbKQS0kXONj3wL U5T55eqE/0FtniZ22axhnMLwpyCa7p60ct6RY2Y+Lblhi6BzpPXzHhTuNMwsHsidiyS7YTtLHel 0EYwiZFetzGHO/HWv2h7l4ygH1rqzWvOFlmcfpf4dXD1w== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-science.scm (snakemake): New variable. --- gnu/packages/python-science.scm | 122 ++++++++++++++++++++++++++++++++ 1 file changed, 122 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index ac16401254..7ccd991478 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -27,6 +27,7 @@ ;;; Copyright © 2024 Marco Baggio ;;; Copyright © 2024 Nicolas Graves ;;; Copyright © 2024 Rick Huijzer +;;; Copyright © 2025 Nicolas Graves ;;; ;;; This file is part of GNU Guix. ;;; @@ -67,6 +68,7 @@ (define-module (gnu packages python-science) #:use-module (gnu packages maths) #:use-module (gnu packages mpi) #:use-module (gnu packages pcre) + #:use-module (gnu packages package-management) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) @@ -82,6 +84,7 @@ (define-module (gnu packages python-science) #:use-module (gnu packages ssh) #:use-module (gnu packages statistics) #:use-module (gnu packages time) + #:use-module (gnu packages version-control) #:use-module (gnu packages xdisorg) #:use-module (gnu packages xml) #:use-module (gnu packages xorg) @@ -4410,6 +4413,125 @@ (define-public python-libneuroml neuronal models") (license license:bsd-3))) +(define-public snakemake + (package + (name "snakemake") + (version "8.29.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "snakemake" version)) + (sha256 + (base32 "1ilpmrjmnc529p4gw2x23ik1d8b5pm6k1dhq08dknvfjsf3vgyjr")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + #~(list + ;; XXX: Unclear why these tests fail. + "--ignore=tests/test_report_href/test_script.py" + "--ignore=tests/test_script_py/scripts/test_explicit_import.py" + "--ignore=tests/test_output_index.py" + ;; We don't care about testing old python@3.7 on Guix. + "--ignore=tests/test_conda_python_3_7_script/test_script.py" + ;; Those require additional snakemake plugins. + "--ignore=tests/test_api.py" + "--ignore=tests/test_executor_test_suite.py" + ;; We don't care about lints. + "--ignore=tests/test_linting.py" + ;; These tests attempt to change S3 buckets on AWS and fail + ;; because there are no AWS credentials. + "--ignore=tests/test_tibanna" + ;; It's a similar story with this test, which requires access + ;; to the Google Storage service. + "--ignore=tests/test_google_lifesciences") + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'avoid-assets-download + (lambda _ + (substitute* "setup.py" + (("^from assets import Assets") "") + (("^Assets\\.deploy\\(\\)") "")))) + ;; For cluster execution Snakemake will call Python. Since there is + ;; no suitable GUIX_PYTHONPATH set, cluster execution will fail. We + ;; fix this by calling the snakemake wrapper instead. + (add-after 'unpack 'call-wrapper-not-wrapped-snakemake + (lambda _ + (substitute* "snakemake/executors/__init__.py" + (("self\\.get_python_executable\\(\\),") + "") + (("\"-m snakemake\"") + (string-append "\"" #$output + "/bin/snakemake" "\"")) + ;; The snakemake command produced by format_job_exec contains + ;; references to /gnu/store. Prior to patching above that's + ;; just a reference to Python; after patching it's a reference + ;; to the snakemake executable. + ;; + ;; In Tibanna execution mode Snakemake arranges for a certain + ;; Docker image to be deployed to AWS. It then passes its own + ;; command line to Tibanna. This is misguided because it only + ;; ever works if the local Snakemake command was run inside + ;; the same Docker image. In the case of using Guix this is + ;; never correct, so we need to replace the store reference. + (("tibanna_args.command = command") + (string-append + "tibanna_args.command = command.replace('" + #$output "/bin/snakemake', 'python3 -m snakemake')"))))) + (add-after 'unpack 'patch-version + (lambda _ + (substitute* "setup.py" + (("version=versioneer.get_version\\(\\)") + (format #f "version=~s" #$version))) + (substitute* '("snakemake/_version.py" + "versioneer.py") + (("0\\+unknown") #$version)))) + (add-before 'check 'pre-check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (setenv "HOME" "/tmp"))))))) + (inputs + (list python-appdirs + python-conda-inject + python-configargparse + python-connection-pool + python-docutils + python-dpath + python-gitpython + python-humanfriendly + python-immutables + python-jinja2 + python-jsonschema + python-nbformat + python-packaging + python-psutil + python-pulp + python-pyyaml + python-requests + python-reretry + python-smart-open + python-snakemake-interface-common + python-snakemake-interface-executor-plugins + python-snakemake-interface-report-plugins + python-snakemake-interface-storage-plugins + python-tabulate + python-throttler + python-wrapt + python-yte)) + (native-inputs + (list python-numpy + python-pandas + python-setuptools + python-tomli + python-wheel)) + (home-page "https://snakemake.readthedocs.io") + (synopsis "Python-based execution environment for make-like workflows") + (description + "Snakemake aims to reduce the complexity of creating workflows by +providing a clean and modern domain specific specification language (DSL) in +Python style, together with a fast and comfortable execution environment.") + (license license:expat))) + ;;; ;;; Avoid adding new packages to the end of this file. To reduce the chances ;;; of a merge conflict, place them above by existing packages with similar -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:18:09 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:18:10 +0000 Received: from localhost ([127.0.0.1]:35500 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trSiW-0001LL-Ru for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:18:09 -0400 Received: from 8.mo581.mail-out.ovh.net ([46.105.77.114]:58885) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShv-0001GG-FQ for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:32 -0400 Received: from director9.ghost.mail-out.ovh.net (unknown [10.109.148.126]) by mo581.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0sQ3nDFz1J58 for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:30 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-22g62 (unknown [10.111.174.226]) by director9.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 3C8C21FD48; Mon, 10 Mar 2025 02:17:30 +0000 (UTC) Received: from ngraves.fr ([37.59.142.110]) by ghost-submission-5b5ff79f4f-22g62 with ESMTPSA id LlmmNrlLzmcIFAAASu2uQg (envelope-from ); Mon, 10 Mar 2025 02:17:30 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-110S004a6ae0a8c-5dca-49e0-b93f-d90867d39a89, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 37/40] gnu: python-ratelimiter: Update to 1.2.0-0.da78a45. Date: Mon, 10 Mar 2025 03:16:42 +0100 Message-ID: <20250310021652.17530-37-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5456673899577926370 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekuddvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepvdehleeiffehtedvlefhffffjeefgfduhfetkeevheeiteduiedugfekuedtheejnecuffhomhgrihhnpehgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggedpfeejrdehledrudegvddruddutdenucevlhhushhtvghrufhiiigvpeegnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedupdhrtghpthhtohepjeeikeefheesuggvsggsuhhgshdrghhnuhdrohhrghdpoffvtefjohhsthepmhhoheekudgmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=Ws7nCq7FB3MgMiqJ8+sLNOQDb58G8HebA0AtdRNIIso=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573050; v=1; b=oz+uwnJYfmwW6w31g8+OJ4dFnsYBhOSyHGRl1B6N3mK3SZ1E2YfbMX1csrWDZAgWTsikcfRZ QF+Ia2Ix1lZ/l/qu7WjljpzQhKn5E92gic6mtv00jrDroQZq1X4u5Uxj+CmqTPb3w2ZkEV7MTR2 kqTXXR016ORix21Os1RzUJVgRw3+XSQKwMK0Tt3YxZrlId0zMklgjfIYdrxjmtn/sXZF+WOTwbM Sjjq0CaLhOIfoJ0IUwYUzOdyFNrdp2m2x1rZP34KLGzoK7KPOnm1qrQF7Y1ZEBOTLqZANr28Kmn kLrYQEPOkxyb6qywu0f0lUXSLPXM69NOMM+hRy72WGA5A== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-xyz.scm (python-ratelimiter): Update to 1.2.0-0.da78a45. [native-inputs]: Add python-pytest, python-pytest-asyncio, python-setuptools, python-wheel. [arguments]{phases}: Add 'patch phase. --- gnu/packages/python-xyz.scm | 62 ++++++++++++++++++++++++++----------- 1 file changed, 44 insertions(+), 18 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index a12edc7ab0..81b8386049 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -27885,25 +27885,51 @@ (define-public python-tracerite (license license:unlicense))) (define-public python-ratelimiter - (package - (name "python-ratelimiter") - (version "1.2.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "ratelimiter" version)) - (sha256 - (base32 - "1dhz85mj5bqd2mij84ncs6pz32hgidr79hay4aqfmzaa4rbb497p")))) - (build-system python-build-system) - (arguments - '(#:tests? #f)) ; There are no tests in the pypi archive. - (home-page "https://github.com/RazerM/ratelimiter") - (synopsis "Simple rate limiting object") - (description - "The @code{ratelimiter} module ensures that an operation will not be + ;; Latest commit of the archived repository. + (let ((commit "da78a45867c3a204083c6ea8ee74f6b3e78ef524") + (revision "0")) + (package + (name "python-ratelimiter") + (version (git-version "1.2.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/RazerM/ratelimiter") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1dhfp170wzbn2pfgha5bacc8cmibs5vq4cdgpbibqbwpxm797xrb")))) + (build-system pyproject-build-system) + (arguments + (list #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'patch + (lambda _ + ;; Patch for pytest@7 support + ;; Taken from /pull/13 + (substitute* "tests/conftest.py" + (("pytest\\.collect\\.File") + "pytest.File")) + ;; Patch for python@3.8+ support + ;; Taken from /pull/11 + (substitute* "ratelimiter/_async.py" + (("with await self\\._alock:") + "async with self._alock:") + (("__aexit__ = asyncio\\.coroutine\\(.*\\)") "\ +async def __aexit__(self, exc_type, exc_value, traceback): + return super(AsyncRateLimiter, self).\ +__exit__(exc_type, exc_value, traceback)"))))))) + (native-inputs (list python-pytest + python-pytest-asyncio + python-setuptools + python-wheel)) + (home-page "https://github.com/RazerM/ratelimiter") + (synopsis "Simple rate limiting object") + (description + "The @code{ratelimiter} module ensures that an operation will not be executed more than a given number of times during a given period.") - (license license:asl2.0))) + (license license:asl2.0)))) (define-public python-jsonrpclib-pelix (package -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:18:11 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:18:11 +0000 Received: from localhost ([127.0.0.1]:35503 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trSiX-0001LX-Qb for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:18:11 -0400 Received: from 4.mo576.mail-out.ovh.net ([46.105.42.102]:43259) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShx-0001GP-Ac for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:35 -0400 Received: from director7.ghost.mail-out.ovh.net (unknown [10.108.25.16]) by mo576.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0sR4Jwsz1rVR for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:31 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-hnqq5 (unknown [10.110.168.82]) by director7.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 475321FDED; Mon, 10 Mar 2025 02:17:31 +0000 (UTC) Received: from ngraves.fr ([37.59.142.104]) by ghost-submission-5b5ff79f4f-hnqq5 with ESMTPSA id WFFCB7tLzmdLFQQAm7sZlQ (envelope-from ); Mon, 10 Mar 2025 02:17:31 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-104R005bd6f9d98-4a8c-4ae4-b476-c3c81023a5ab, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 38/40] gnu: snakemake-7: Move to (gnu packages python-science). Date: Mon, 10 Mar 2025 03:16:43 +0100 Message-ID: <20250310021652.17530-38-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5456955375240733410 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekuddvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfgggtgfesthekredtredtjeenucfhrhhomheppfhitgholhgrshcuifhrrghvvghsuceonhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrqeenucggtffrrghtthgvrhhnpedvffehgeekhfekgffgleehffetiefggeeitdduteekfffhkeehveejfeejledtieenucffohhmrghinhepghhithhhuhgsrdgtohhmnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutdegnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehjeeimgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=5pouJzPKEYFvTlw7e24ZGxD5fp3SsBW4qH4Zn7otNbg=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573051; v=1; b=hxGM/t20KvI9lQ3IpMNN2OZp17kYq+5BkqK1/x2awuo4gNH9QmTxMmQYt0e1TDdJAoPw89za VF2JlPIBpLnB3lMrLd6224xX3j1Osr0oKib/Qp1wsTMZGFDJDCwZXHtP81h7JQ6RPEvFWTtllJK fdrjwb+kpQlVW5gbsJ5y3CYvZ0+u2y4sjpPTyq55PGKCUtPneMr7tuAg86ZzZqs5ZX7MtpHrN4N F2zShgdPDAtYXbR4/r0kLYLZwL7df78OSdZZ9N+2EhwPu77E1NUrNKgzDUXpnE6UbHAeNQYQ/wb wfJdbxKD/WslMKdPfcRul1/s27GgiZBlWyPww/+G56gGw== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-xyz.scm (snakemake-7): Move from here… * gnu/packages/python-science.scm (snakemake-7): …to here. Inherit from snakemake@8. --- gnu/packages/python-science.scm | 70 +++++++++++++++++++++ gnu/packages/python-xyz.scm | 104 -------------------------------- 2 files changed, 70 insertions(+), 104 deletions(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 7ccd991478..5acead6523 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -4532,6 +4532,76 @@ (define-public snakemake Python style, together with a fast and comfortable execution environment.") (license license:expat))) +(define-public snakemake-7 + (package + (inherit snakemake) + (name "snakemake") + (version "7.7.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/snakemake/snakemake") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1qrqbmx4cbis0wxr6dl2rdjv9v627sbirsz6v5c31vlbqwkvs04q")))) + (build-system pyproject-build-system) + (arguments + (substitute-keyword-arguments (package-arguments snakemake) + ((#:test-flags test-flags) + #~(list + ;; We don't care about lints. + "--ignore=tests/test_linting.py" + ;; These tests attempt to change S3 buckets on AWS and fail + ;; because there are no AWS credentials. + "--ignore=tests/test_tibanna.py" + ;; It's a similar story with this test, which requires access + ;; to the Google Storage service. + "--ignore=tests/test_google_lifesciences.py")) + ((#:phases phases) + #~(modify-phases #$phases + (delete 'avoid-assets-download) + ;; No longer needed with 7.15.2+ + (add-after 'unpack 'tabulate-compatibility + (lambda _ + (substitute* "snakemake/dag.py" + (("\"job\": rule,") + "\"job\": rule.name,")))))))) + (propagated-inputs + (list python-appdirs + python-configargparse + python-connection-pool + python-datrie + python-docutils + python-filelock + python-gitpython + python-jinja2 + python-jsonschema + python-nbformat + python-networkx + python-psutil + python-pulp + python-pyyaml + python-py-tes + python-ratelimiter + python-requests + python-retry + python-smart-open + python-stopit + python-tabulate + python-toposort + python-wrapt + python-yte)) + (native-inputs + (list git-minimal + python-wrapper + python-pytest + python-pandas + python-requests-mock + python-setuptools + python-wheel)))) + ;;; ;;; Avoid adding new packages to the end of this file. To reduce the chances ;;; of a merge conflict, place them above by existing packages with similar diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 81b8386049..740e6cfd33 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -15082,110 +15082,6 @@ (define-public snakemake-6 python-setuptools python-wheel)))) -(define-public snakemake-7 - (package - (inherit snakemake-6) - (name "snakemake") - (version "7.7.0") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/snakemake/snakemake") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "1qrqbmx4cbis0wxr6dl2rdjv9v627sbirsz6v5c31vlbqwkvs04q")))) - (build-system pyproject-build-system) - (arguments - (list - #:phases - #~(modify-phases %standard-phases - ;; For cluster execution Snakemake will call Python. Since there is - ;; no suitable GUIX_PYTHONPATH set, cluster execution will fail. We - ;; fix this by calling the snakemake wrapper instead. - (add-after 'unpack 'call-wrapper-not-wrapped-snakemake - (lambda* (#:key outputs #:allow-other-keys) - (substitute* "snakemake/executors/__init__.py" - (("self\\.get_python_executable\\(\\),") - "") - (("\"-m snakemake\"") - (string-append "\"" #$output - "/bin/snakemake" "\"")) - ;; The snakemake command produced by format_job_exec contains - ;; references to /gnu/store. Prior to patching above that's - ;; just a reference to Python; after patching it's a reference - ;; to the snakemake executable. - ;; - ;; In Tibanna execution mode Snakemake arranges for a certain - ;; Docker image to be deployed to AWS. It then passes its own - ;; command line to Tibanna. This is misguided because it only - ;; ever works if the local Snakemake command was run inside - ;; the same Docker image. In the case of using Guix this is - ;; never correct, so we need to replace the store reference. - (("tibanna_args.command = command") - (string-append - "tibanna_args.command = command.replace('" - #$output "/bin/snakemake', 'python3 -m snakemake')"))))) - ;; No longer needed with 7.15.2+ - (add-after 'unpack 'tabulate-compatibility - (lambda _ - (substitute* "snakemake/dag.py" - (("\"job\": rule,") - "\"job\": rule.name,")))) - (add-after 'unpack 'patch-version - (lambda _ - (substitute* "setup.py" - (("version=versioneer.get_version\\(\\)") - (format #f "version=~s" #$version))) - (substitute* '("snakemake/_version.py" - "versioneer.py") - (("0\\+unknown") #$version)))) - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (setenv "HOME" "/tmp") - ;; This test attempts to change S3 buckets on AWS and fails - ;; because there are no AWS credentials. - (delete-file "tests/test_tibanna.py") - ;; It's a similar story with this test, which requires access - ;; to the Google Storage service. - (delete-file "tests/test_google_lifesciences.py") - (invoke "pytest"))))))) - (propagated-inputs - (list python-appdirs - python-configargparse - python-connection-pool - python-datrie - python-docutils - python-filelock - python-gitpython - python-jinja2 - python-jsonschema - python-nbformat - python-networkx - python-psutil - python-pulp - python-pyyaml - python-py-tes - python-ratelimiter - python-requests - python-retry - python-smart-open - python-stopit - python-tabulate - python-toposort - python-wrapt - python-yte)) - (native-inputs - (list git-minimal - python-wrapper - python-pytest - python-pandas - python-requests-mock - python-setuptools - python-wheel)))) - (define-public python-pyqrcode (package (name "python-pyqrcode") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:18:12 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:18:12 +0000 Received: from localhost ([127.0.0.1]:35508 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trSiZ-0001M0-5I for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:18:12 -0400 Received: from 2.mo582.mail-out.ovh.net ([46.105.76.65]:37265) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShy-0001Gq-6I for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:35 -0400 Received: from director3.ghost.mail-out.ovh.net (unknown [10.108.25.152]) by mo582.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0sS4JyNz1QS7 for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:32 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-hnqq5 (unknown [10.110.178.147]) by director3.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 5DE971FD39; Mon, 10 Mar 2025 02:17:32 +0000 (UTC) Received: from ngraves.fr ([37.59.142.111]) by ghost-submission-5b5ff79f4f-hnqq5 with ESMTPSA id wPm1AbxLzmdNFQQAm7sZlQ (envelope-from ); Mon, 10 Mar 2025 02:17:32 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-111S0055ee43137-1fa1-432b-9c91-4148235a86f8, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 39/40] gnu: snakemake-6: Move to (gnu packages python-science). Date: Mon, 10 Mar 2025 03:16:44 +0100 Message-ID: <20250310021652.17530-39-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5457236849157595874 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekuddvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfgggtgfesthekredtredtjeenucfhrhhomheppfhitgholhgrshcuifhrrghvvghsuceonhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrqeenucggtffrrghtthgvrhhnpedvffehgeekhfekgffgleehffetiefggeeitdduteekfffhkeehveejfeejledtieenucffohhmrghinhepghhithhhuhgsrdgtohhmnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrdduuddunecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehkedvmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=sPuNZz5Odw/U+QCw/SLHyOZw3PrO6Zh4OhSh0jIJDDg=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573052; v=1; b=qhnD1A6LNkbWa219KBRU1xeMgdlLe/tkXlqsVs3xM7rH0ZKfS80FfeuWjjrclAfr6KjjKc5B 8biPjEb69YjBYiyYuommjCLf4ACYB04M1+P7IKdZSBGl0RtWVKqOARfAX3TWB08AForKUxADv25 CFQ4/iFlw40cbt8czGCwR6tSo4eo1DyRLnCJYGfPeHvQaxyVkOMZu37PNm1VoDczdRpKQa3nWC8 jqO2eDEKSIjBzmTpttC9VMYWv3v/bsE4SUTkT3/Xmu+duiktzH4Y+HjUXAeuun3qogKVAUSzaC5 NQGb9P9SkT8iXddhzLyc8KYoMPyqt7tt6qpWaxtbM/BSg== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-xyz.scm (snakemake-6): Move from here… * gnu/packages/python-science.scm (snakemake-6): …to here. Inherit from snakemake-7. --- gnu/packages/python-science.scm | 19 ++++++++ gnu/packages/python-xyz.scm | 83 --------------------------------- 2 files changed, 19 insertions(+), 83 deletions(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 5acead6523..509e77b765 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -4602,6 +4602,25 @@ (define-public snakemake-7 python-setuptools python-wheel)))) +(define-public snakemake-6 + (package + (inherit snakemake-7) + (name "snakemake") + (version "6.15.5") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/snakemake/snakemake") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "09yrpi9f86r9yvcm2dfjs5zy87c4j31bxama77kfd6y8yfrrjlai")))) + (build-system pyproject-build-system) + (propagated-inputs + (modify-inputs (package-propagated-inputs snakemake-7) + (delete "python-retry" "python-yte"))))) + ;;; ;;; Avoid adding new packages to the end of this file. To reduce the chances ;;; of a merge conflict, place them above by existing packages with similar diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 740e6cfd33..fa73a189ce 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -14999,89 +14999,6 @@ (define-public snakemake Python style, together with a fast and comfortable execution environment.") (license license:expat))) -(define-public snakemake-6 - (package - (inherit snakemake) - (name "snakemake") - (version "6.15.5") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/snakemake/snakemake") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "09yrpi9f86r9yvcm2dfjs5zy87c4j31bxama77kfd6y8yfrrjlai")))) - (build-system pyproject-build-system) - (arguments - (list - #:phases - #~(modify-phases %standard-phases - ;; For cluster execution Snakemake will call Python. Since there is - ;; no suitable GUIX_PYTHONPATH set, cluster execution will fail. We - ;; fix this by calling the snakemake wrapper instead. - - ;; XXX: There is another instance of sys.executable on line 692, but - ;; it is not clear how to patch it. - (add-after 'unpack 'call-wrapper-not-wrapped-snakemake - (lambda* (#:key outputs #:allow-other-keys) - (substitute* "snakemake/executors/__init__.py" - (("\\{sys.executable\\} -m snakemake") - (string-append #$output "/bin/snakemake"))))) - (add-after 'unpack 'tabulate-compatibility - (lambda _ - (substitute* "snakemake/dag.py" - (("\"job\": rule,") - "\"job\": rule.name,")))) - (add-after 'unpack 'patch-version - (lambda _ - (substitute* "setup.py" - (("version=versioneer.get_version\\(\\)") - (format #f "version=~s" #$version))) - (substitute* '("snakemake/_version.py" - "versioneer.py") - (("0\\+unknown") #$version)))) - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (setenv "HOME" "/tmp") - ;; This test attempts to change S3 buckets on AWS and fails - ;; because there are no AWS credentials. - (delete-file "tests/test_tibanna.py") - (invoke "pytest"))))))) - (propagated-inputs - (list python-appdirs - python-configargparse - python-connection-pool - python-datrie - python-docutils - python-filelock - python-gitpython - python-jinja2 - python-jsonschema - python-nbformat - python-networkx - python-psutil - python-pulp - python-pyyaml - python-py-tes - python-ratelimiter - python-requests - python-smart-open - python-stopit - python-tabulate - python-toposort - python-wrapt)) - (native-inputs - (list git-minimal - python-wrapper - python-pytest - python-pandas - python-requests-mock - python-setuptools - python-wheel)))) - (define-public python-pyqrcode (package (name "python-pyqrcode") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 09 22:18:12 2025 Received: (at 76835) by debbugs.gnu.org; 10 Mar 2025 02:18:13 +0000 Received: from localhost ([127.0.0.1]:35511 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1trSia-0001MH-65 for submit@debbugs.gnu.org; Sun, 09 Mar 2025 22:18:12 -0400 Received: from 5.mo575.mail-out.ovh.net ([46.105.62.179]:44365) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1trShy-0001HA-OW for 76835@debbugs.gnu.org; Sun, 09 Mar 2025 22:17:41 -0400 Received: from director11.ghost.mail-out.ovh.net (unknown [10.108.9.128]) by mo575.mail-out.ovh.net (Postfix) with ESMTP id 4ZB0sT51n8z1l81 for <76835@debbugs.gnu.org>; Mon, 10 Mar 2025 02:17:33 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-92z2j (unknown [10.108.42.20]) by director11.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 64FA41FE11; Mon, 10 Mar 2025 02:17:33 +0000 (UTC) Received: from ngraves.fr ([37.59.142.110]) by ghost-submission-5b5ff79f4f-92z2j with ESMTPSA id g5NBBr1Lzmc9CAIA//9mqw (envelope-from ); Mon, 10 Mar 2025 02:17:33 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-110S0044af1497b-b5cf-4561-bb49-8a21b7582afd, 031A57722FDA369A3035EBF391DEEA525A5E801E) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves To: 76835@debbugs.gnu.org Subject: [PATCH v3 40/40] gnu: Remove snakemake. Date: Mon, 10 Mar 2025 03:16:45 +0100 Message-ID: <20250310021652.17530-40-ngraves@ngraves.fr> X-Mailer: git-send-email 2.48.1 In-Reply-To: <20250310021652.17530-1-ngraves@ngraves.fr> References: <20250310021652.17530-1-ngraves@ngraves.fr> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 5457518327197328098 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduudekuddvucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepvdfhtdevudeguddvudeliedvveetffeikeejieffudevleffieehvdfffffggeejnecuffhomhgrihhnpehgihhthhhusgdrtghomhdprhgvrgguthhhvgguohgtshdrihhonecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrdduuddtnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopeejieekfeehseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehjeehmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=TiOqsEliAdqM+h9T5uNjTkpgpWFcOsD4iyHD0SN+T0k=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741573053; v=1; b=thlHwIxt66tNignEmS7pRAisSJpzhuZ4/RUpfzGGdkh8PKGejrKnlG27QAzLZ+yoma5FhJ4h ZQNTjR44mThuE44YZcYCsV+1kmBr/XYUPtQDVnjPIAWkZV1kiMKFzp+K4YepUmoyHFNQBioIViA O7ji+ANzQkfStRbYy3XSgtYT2zgK3oR6kFrno9Ddc9YeTNcGIFSXovn75sESOofYqNpadhVfMV8 XMRlUxHGB4tgpm/p5uOm4XfzkAEUA717FMUPscFBaiKXasRz6TjX9S92Tpk6TTikCGwykOQl/DQ JfHiST6SRnTrO4Q/r0ZDSpxOp3WndosBcVWyOcFlIfeMw== X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-xyz.scm (snakemake): Delete variable. --- gnu/packages/python-xyz.scm | 84 ------------------------------------- 1 file changed, 84 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index fa73a189ce..91c662c35c 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -14915,90 +14915,6 @@ (define-public python-throttler throttling with asyncio support.") (license license:expat))) -(define-public snakemake - (package - (name "snakemake") - (version "5.32.2") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/snakemake/snakemake") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "0nxp4z81vykv07kv2b6zrwk7ns8s10zqsb7vcignp8695yq3nlcm")))) - (build-system pyproject-build-system) - (arguments - (list - #:test-flags - '(list - ;; We have no TES support. - "--ignore=tests/test_tes.py" - ;; This test attempts to change S3 buckets on AWS and fails - ;; because there are no AWS credentials. - "--ignore=tests/test_tibanna.py" - ;; It's a similar story with this test, which requires access - ;; to the Google Storage service. - "--ignore=tests/test_google_lifesciences.py") - #:phases - #~(modify-phases %standard-phases - (add-after 'unpack 'tabulate-compatibility - (lambda _ - (substitute* "snakemake/dag.py" - (("\"job\": rule,") - "\"job\": rule.name,")))) - (add-after 'unpack 'patch-version - (lambda _ - (substitute* "setup.py" - (("version=versioneer.get_version\\(\\)") - (format #f "version=~s" #$version))) - (substitute* '("snakemake/_version.py" - "versioneer.py") - (("0\\+unknown") #$version)))) - ;; For cluster execution Snakemake will call Python. Since there is - ;; no suitable PYTHONPATH set, cluster execution will fail. We fix - ;; this by calling the snakemake wrapper instead. - (add-after 'unpack 'call-wrapper-not-wrapped-snakemake - (lambda _ - (substitute* "snakemake/executors/__init__.py" - (("\\{sys.executable\\} -m snakemake") - (string-append #$output "/bin/snakemake"))))) - (add-before 'check 'pre-check - (lambda _ (setenv "HOME" "/tmp")))))) - (propagated-inputs - (list python-appdirs - python-configargparse - python-datrie - python-docutils - python-gitpython - python-jinja2 - python-jsonschema - python-nbformat - python-networkx - python-psutil - python-pulp - python-pyyaml - python-ratelimiter - python-requests - python-toposort - python-wrapt)) - (native-inputs - (list git-minimal - python-wrapper - python-pytest - python-pandas - python-requests-mock - python-setuptools - python-wheel)) - (home-page "https://snakemake.readthedocs.io") - (synopsis "Python-based execution environment for make-like workflows") - (description - "Snakemake aims to reduce the complexity of creating workflows by -providing a clean and modern domain specific specification language (DSL) in -Python style, together with a fast and comfortable execution environment.") - (license license:expat))) - (define-public python-pyqrcode (package (name "python-pyqrcode") -- 2.48.1 From debbugs-submit-bounces@debbugs.gnu.org Wed Mar 12 15:30:50 2025 Received: (at 76835) by debbugs.gnu.org; 12 Mar 2025 19:30:50 +0000 Received: from localhost ([127.0.0.1]:51770 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tsRn0-0002xp-00 for submit@debbugs.gnu.org; Wed, 12 Mar 2025 15:30:50 -0400 Received: from mail-wm1-x329.google.com ([2a00:1450:4864:20::329]:42470) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.84_2) (envelope-from ) id 1tsRmw-0002xX-Nu for 76835@debbugs.gnu.org; Wed, 12 Mar 2025 15:30:47 -0400 Received: by mail-wm1-x329.google.com with SMTP id 5b1f17b1804b1-43cfa7e7f54so1583595e9.1 for <76835@debbugs.gnu.org>; Wed, 12 Mar 2025 12:30:46 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1741807840; x=1742412640; darn=debbugs.gnu.org; h=mime-version:message-id:date:subject:cc:to:from:from:to:cc:subject :date:message-id:reply-to; bh=/jHWJDjiUCtFWyq0MpXXr5BrLUKWPKzpUKcUhEjv888=; b=JVjWJEpCiS4djvX6yRbjg9UJ1VLrpu+ibh370ar5ctQSZrMoMdANHFViE3V1eReP7h DqLcJxWGuG7IRlUtMeE/sKmrmPf8MX1OlV6YoERGyXS6wU7Jo+BUNqUg9g4tnX3vu3ir IBxYQXPwh+ulahQYnAK/m3IqTbIsaH/Gq07TP0MeXec9kOA4Hb+DHcw5lgw7msutwa9Q DEIr84FpNCxHL7yvSEVz+h/68/Bh0Zakmp0IfxC36x2mFJXgoizDUgxnyN4XrJWZzXBf BgJUKG3dMQ5zRrRYnn0gK0ITnc8NrCmNMvOvu1gkddkZAZxJ25DZPJyPxlEZH/rEryme GC9g== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1741807840; x=1742412640; h=mime-version:message-id:date:subject:cc:to:from:x-gm-message-state :from:to:cc:subject:date:message-id:reply-to; bh=/jHWJDjiUCtFWyq0MpXXr5BrLUKWPKzpUKcUhEjv888=; b=U+QQvNmO6uoVFGXJhDYzKJ3cKR9uVxRgMnPJUIPLc2vD0wpkeW51E+T51B5tshkMoI K6Cw+0sNbKhWvjnanOzM1gFrURN3NiyoztV04Q+1ok308+DqfQ/ma9hM/TrFvDdbkkWs QexiBCj2QUQvAkGToLSrf9ZJmVyb2GLSzXnz7xT/aAEI+HYA5qnYYAxNNbZuRa2CyHUL +esES9+Ll6Khefagg53tRezIMn6g+/hmnC1RVPSOhrjgYmUU5aWIDOXp1ufLbIaHu2+Q mHZF4e1W3VBx5dCVTb+Ne/QTwdTEu45KzVftmQ5fsEPSBg2AlMgV/1G7CeG/3ZgzIS5w NdQQ== X-Gm-Message-State: AOJu0Ywl7V5aGYCGaEVmktwE8By6aQIKoXVPKdn5avGP/Ia7KcTNiuwY vpKoNX/V2AXgMWgS6HFKFlje4AFilQClHUvbgRxcYq2d8gqMjqtM X-Gm-Gg: ASbGncvltqI0nuQNcQAu7ktv4eFLnJ+aIbAUMSpVwrcWx91lRpq0RNqCKJvaRSdXD/n 6VISU3HGAClROw+nsBCY6unhtVHxZK90gqfLBZ0SYGhEFl4HELwsLYuzCTRXxImqOKnrioOTi6l uKxeGmaZEC+PFUAM4k/fBZDHvTGEuclerajr7JSp0OHfobdmPp4lbn4HPJ4JHbTgOShtJzilMsM 3Nw/4khysqoqIbitV6hdbsdb+WjoEdnmO/BNnye3vS8VOHnZkm0ghjyL01WXnlx/RZiJtQCqCQH l1roRH/wn9QayHvlyWL4HYcToYQVLOT1MXshYGiSIsbo2SwjeuJ5u7e4r96bIwOa+fkDHy6EX8B /+JThaRhrOb0qjWrRoJAsDqwpGVv1z2g= X-Google-Smtp-Source: AGHT+IHUCpl6Xd2h7Ixqkkeqolzm4iKG+RTcpnhcEagrb32V4WXemeWW4VlP9un0SisHYLvhIlBwJw== X-Received: by 2002:a05:600c:3b84:b0:439:4c1e:d810 with SMTP id 5b1f17b1804b1-43d161a8683mr6480725e9.9.1741807839660; Wed, 12 Mar 2025 12:30:39 -0700 (PDT) Received: from guxtil (cpc100684-bagu15-2-0-cust967.1-3.cable.virginm.net. [86.8.111.200]) by smtp.gmail.com with ESMTPSA id 5b1f17b1804b1-43d0a74d558sm30094345e9.15.2025.03.12.12.30.38 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 12 Mar 2025 12:30:38 -0700 (PDT) From: Sharlatan Hellseher To: 76835@debbugs.gnu.org Subject: [PATCH python-team 00/15] Some further python fixes Date: Wed, 12 Mar 2025 19:30:36 +0000 Message-ID: <8734fiqc6b.fsf@gmail.com> MIME-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha512; protocol="application/pgp-signature" X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76835 Cc: Nicolas Graves X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) --=-=-= Content-Type: text/plain Hi While nothing is working right now (mumi and patchwork) I'm about to pull v3 patches like this: --8<---------------cut here---------------start------------->8--- seq 1 79 | while read -r i; do curl https://issues.guix.gnu.org/issue/76835/raw/$i -o $i & done grep -ow "PATCH.v3..." -r . | sed -e 's/PATCH//' -e 's/v3 /v3-0/' -e 's/: / /' | while read -r of nf; do cp $of $nf; done --8<---------------cut here---------------end--------------->8--- -- Oleg --=-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQJKBAEBCgA0FiEEmEeB3micIcJkGAhndtcnv/Ys0rUFAmfR4NwWHHNoYXJsYXRh bnVzQGdtYWlsLmNvbQAKCRB21ye/9izStQC8D/0VNbMZMdMscd3AIZJHmfnvWN59 L0vaF6JRaHZ2KBh2WmnCoS45bncG1qz4TDTnZAOH6L0HCYf8hOai4nyi0XVnyTc+ PSP0RBMyZ3uLNvu25sD9E8fZgV7hcnzfNs7DF5+4peUZqict1PBjSRsHF1kzhOZ9 ZLHEpCihwhb/C5DrR9W3xgGVOh1qgK1QTJxI+HIZRuhbkuFzANNbxX3Vhiip1HrH BPIxjCgp1psu/+xbpnkfhzQd4Qt8jZO4zJU2Qjc+bR4mV05xTF8c41JKawOCkgE7 YXsQzxq5oFHF2KFT1Jfiza72Mkrrg6T5nBS/3TIUxH2EHIf1KOqtZEa5FRibwBkg i6GvpOVtfyp3zeePU2uM8bkrb80mpfjc+gd8EqtFZ+3j6MdTOm0KTUO6jnCMr/aW 5h6OTJCPEHlbGrFzOMLk69jQ4XfQux+WDVGZXoAOnq/O2ZgKqsTM5PPHMfwlJDj3 21tBwGjQ/7+1kpfsqjrcXl7dKt6TPUG3n74lypVRnHV6uQi44NrJLXkodWiY3qgQ wc0s8Q7hjEpuQQ0D6F5zPVc1msZp1AwvZSX+pbmJW/nCFW8A5QYr5wQERfQ02jvQ gKAN8Nm1mZiCP+czCNqtoxF97U3x/nHHn/lrhBTSrKUBXOLQDmuXi8CaCyiZuUH6 1Dl5sljgQCgAdB4/aQ== =SewZ -----END PGP SIGNATURE----- --=-=-=-- From debbugs-submit-bounces@debbugs.gnu.org Mon Apr 14 19:43:27 2025 Received: (at 76835-done) by debbugs.gnu.org; 14 Apr 2025 23:43:27 +0000 Received: from localhost ([127.0.0.1]:49476 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1u4TSZ-0003qv-0z for submit@debbugs.gnu.org; Mon, 14 Apr 2025 19:43:27 -0400 Received: from mailtransmit04.runbox.com ([2a0c:5a00:149::25]:51248) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1u4TSV-0003qb-Lf for 76835-done@debbugs.gnu.org; Mon, 14 Apr 2025 19:43:25 -0400 Received: from mailtransmit02.runbox ([10.9.9.162] helo=aibo.runbox.com) by mailtransmit04.runbox.com with esmtps (TLS1.2) tls TLS_ECDHE_RSA_WITH_AES_128_GCM_SHA256 (Exim 4.93) (envelope-from ) id 1u4TSM-00Fufl-SI for 76835-done@debbugs.gnu.org; Tue, 15 Apr 2025 01:43:14 +0200 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=futurile.net; s=selector1; h=Content-Type:MIME-Version:Message-ID:Subject: To:From:Date; bh=UPvzsioS5Bz0IFl6nM2t2e6Ox2knuJBTidyKnW8l7FQ=; b=ozW/it+AMNiK uYFK4T1MolAeOIg/Nb0GiAeh8VkpobgUDAZQhDkUt8JyDnpM3grD4k+6h3BTZphgeldwLDaZxVyXo qZ8uhLu8JKGJij5Cy5lbeAtmFZeD0Kb8kehpk9i5JDazWhjErrseHv5QCsz6TxUzK67poJnx3SueY AoZpjN3a5sXbamS0kIKGppz5zAGzwxKgyVHEs9jEb1Q4ybYtqjNlHKN8emN7k2nodDcGDblZijoPJ EsyLbx0gaqlPkLyEOkWb6nAzndB1dqLfaG7SryTCMsl/BAVdf9JwPvLZJDpWnYMWYOIyUodRETCjb No/gLQ9WZuxNS6oH40ngvg==; Received: from [10.9.9.73] (helo=submission02.runbox) by mailtransmit02.runbox with esmtp (Exim 4.86_2) (envelope-from ) id 1u4TSM-0005kf-CK for 76835-done@debbugs.gnu.org; Tue, 15 Apr 2025 01:43:14 +0200 Received: by submission02.runbox with esmtpsa [Authenticated ID (641962)] (TLS1.2:ECDHE_SECP256R1__RSA_SHA256__AES_256_GCM:256) (Exim 4.93) id 1u4TSA-00GXw5-SK for 76835-done@debbugs.gnu.org; Tue, 15 Apr 2025 01:43:02 +0200 Date: Tue, 15 Apr 2025 00:43:01 +0100 From: Steve George To: 76835-done@debbugs.gnu.org Subject: RE: Some further python fixes Message-ID: MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Disposition: inline X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 76835-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) Hi Nicolas, Done in 985fe12efd4f60f006dfabd4f9314dc2f1cead38 Lets see how the tree is with these added, hopefully we're moving in the right direction! Thanks, Futurile / Steve From unknown Sun Jun 22 13:38:37 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Tue, 13 May 2025 11:24:09 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator