GNU bug report logs - #76541
bioinformatics: freebayes@1.3.7: All tests fail.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#76541: closed (bioinformatics: freebayes <at> 1.3.7: All tests fail.)
Date: Tue, 27 May 2025 09:18:02 +0000

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Your message dated Tue, 27 May 2025 10:16:56 +0100
with message-id <87ecwaxvjr.fsf <at> gmail.com>
and subject line bioinformatics: freebayes <at> 1.3.7: All tests fail.
has caused the debbugs.gnu.org bug report #76541,
regarding bioinformatics: freebayes <at> 1.3.7: All tests fail.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
76541: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=76541
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Contact help-debbugs <at> gnu.org with problems

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From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: bug-guix <at> gnu.org
Cc: rekado <at> elephly.net, pjotr.guix <at> thebird.nl
Subject: bioinformatics: freebayes <at> 1.3.7: All tests fail.
Date: Tue, 25 Feb 2025 08:20:00 +0000

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Hi,

I'm checking for any failing packages related to Python and found this
one.

Trying to refresh it to the latest version did not help, it's heavily
patched and might be something changed/not compatible with current Guix.

--8<---------------cut here---------------start------------->8---
guix time-machine --commit=150df457d1e269790f184510c58d031ee00a9ebb -- build freebayes
<...>
――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――


Summary of Failures:

1/5 T03  FAIL            0.19s   exit status 1
2/5 T00  FAIL            0.26s   exit status 1
3/5 T01  FAIL            0.48s   exit status 1
4/5 T02  FAIL            0.51s   exit status 1
5/5 T01b FAIL            0.71s   exit status 1

Ok:                 0
Expected Fail:      0
Fail:               5
Unexpected Pass:    0
Skipped:            0
Timeout:            0

Full log written to /tmp/guix-build-freebayes-1.3.7.drv-0/build/meson-logs/testlog.txt
error: in phase 'check': uncaught exception:
%exception #<&invoke-error program: "meson" arguments: ("test" "--print-errorlogs" "-t" "0") exit-status: 5 term-signal: #f stop-signal: #f>
phase `check' failed after 0.9 seconds
command "meson" "test" "--print-errorlogs" "-t" "0" failed with status 5
build process 18 exited with status 256
builder for `/gnu/store/0i78q2x92mx3rbgc0q16nvng15gr2lnl-freebayes-1.3.7.drv' failed with exit code 1
build of /gnu/store/0i78q2x92mx3rbgc0q16nvng15gr2lnl-freebayes-1.3.7.drv failed
View build log at '/var/log/guix/drvs/0i/78q2x92mx3rbgc0q16nvng15gr2lnl-freebayes-1.3.7.drv.gz'.
--8<---------------cut here---------------end--------------->8---

---
Oleg

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From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 76541-done <at> debbugs.gnu.org
Subject: bioinformatics: freebayes <at> 1.3.7: All tests fail.
Date: Tue, 27 May 2025 10:16:56 +0100

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Fixed in efaa20d2d86bc4f10dfc45a25fca50a0dad6e917. 

--
Oleg

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