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Reply-To: bug#76541 <76541@debbugs.gnu.org> Date: Fri, 20 Jun 2025 14:08:09 +0000 retitle 76541 bioinformatics: freebayes@1.3.7: All tests fail. reassign 76541 guix submitter 76541 Sharlatan Hellseher severity 76541 normal thanks From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 25 03:20:29 2025 Received: (at submit) by debbugs.gnu.org; 25 Feb 2025 08:20:29 +0000 Received: from localhost ([127.0.0.1]:44615 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tmqB3-0004li-9l for submit@debbugs.gnu.org; Tue, 25 Feb 2025 03:20:29 -0500 Received: from lists.gnu.org ([2001:470:142::17]:58198) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tmqB0-0004lP-JN for submit@debbugs.gnu.org; Tue, 25 Feb 2025 03:20:27 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tmqAv-0000GA-4V for bug-guix@gnu.org; Tue, 25 Feb 2025 03:20:21 -0500 Received: from mail-wr1-x436.google.com ([2a00:1450:4864:20::436]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tmqAt-0004bX-FM for bug-guix@gnu.org; Tue, 25 Feb 2025 03:20:20 -0500 Received: by mail-wr1-x436.google.com with SMTP id ffacd0b85a97d-38f3486062eso4482553f8f.0 for ; Tue, 25 Feb 2025 00:20:18 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1740471617; x=1741076417; darn=gnu.org; h=mime-version:message-id:date:subject:cc:to:from:from:to:cc:subject :date:message-id:reply-to; bh=NxbpX9gtIZARjSpr1sejiXzPmor2vGJ3ULHzYnkKnVo=; b=gvDpcl3JMyWZx7gdRWhM97KqH4UvZp1mNrR69AeBj717O3SNRRjvEUoPpmZEfsuWMj xUD3YLaW2MpwjKCioKJSaJF6GU+LXm+unL5x6p04/F/lLwc0b9+MUT8K7DnUFwASelio u5Mbbk42yGnoxnuRPcVX0IZGPDZ4veD4fij6D2N78oXU+2o1Mcr9U3JcQdIzPkMOfgGP rQv+OchCGB12s7sgIyHKUlPA7yxVwpNTDIhb+xXhxIWnuQfHGUlO8STaUvDo5fhJ6RZg 4mDN5+LIJN/4xyv8n0nH2noTdxOom74OXWKhpLZJqWuL6azeC5gZtqcdcCFcTcyX4323 pE6g== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1740471617; x=1741076417; h=mime-version:message-id:date:subject:cc:to:from:x-gm-message-state :from:to:cc:subject:date:message-id:reply-to; bh=NxbpX9gtIZARjSpr1sejiXzPmor2vGJ3ULHzYnkKnVo=; b=vC3+WxIrOk2qZNnc8oCKRqkxAZ/TygPyt9iajFghcaXd6aNmuCxD8IivTOWMlntoTQ ACAs3/foLRPDcEWxkbtKJ31tOUd2wfXFNqo9E8HNYeo604aGpQAuQehFUi+JsMgOk8kx FwnafBvCkLgOQOfw3q8FnewtknrXkKSVzGKAMkk6uFadk9YCSMpldkYPv9exXKLM6gLH 8JlTNdB7BJlEySs52QUZD+S9P1zK2ogYzwsko5r3F6yTnwrxRlDuIuO3fhhMDaMkX4OQ kTnPsnc9dbj3kID7ejYui/cVAEUEIdvV94JfuRcx15eap3/sIGg89ilO9XgnPDQfQiMe JBjA== X-Gm-Message-State: AOJu0Yw2cr4yXTNQvV1LzhJOa0bTPFKVP+r8upgJIlntORQ6idqlgioj uHcsPXBiZqFB3erdTFg8H5eEJeAU3D+nQUrywieuvvNzBGTdezqjluazeQ== X-Gm-Gg: ASbGncvLzDQ3pvMug1eDL3R9v4Vkx3/4h8eZWVvEztZMsP5Bu/q6k3dCdTkdNQFurAn FFRzzGjllj01LdMSZ/iDwT6XPGtz57jDcb6oxAXVtzHin+eZfKU4CuGKtP079X7p49Z0iwyeCAj jIdv3JhSwxI3AwZMjcXstd76BIKvO7p2qb18Vqb3sFjB2iCyJMpphmBgEoruEty00vPBX3zzyzm iCdGwmwSVSrtpgIcMiwvF1/aR33EeZLtv64ndxPz+EOWT5pd44jVpQS84PeXGjbvOzeTA3ibgNm MSHUGPUOQcYzLiwBMXAGB7AcovMW30V0wN1eAoldPSn5WN5Z33tfskd1DC4teSo47Lc10rQlY3s NMA== X-Google-Smtp-Source: AGHT+IGMMSG0JTpdW4vEYPdpaXXYCyFS36CtcF4P+y9iSKHSNSHNnBF0NVTqZ0Y8GNeh9ELo6OgnXg== X-Received: by 2002:a05:6000:2ac:b0:38f:4e50:8b1a with SMTP id ffacd0b85a97d-38f6e9791a1mr15908594f8f.25.1740471616967; Tue, 25 Feb 2025 00:20:16 -0800 (PST) Received: from guxtil (cpc100684-bagu15-2-0-cust967.1-3.cable.virginm.net. [86.8.111.200]) by smtp.gmail.com with ESMTPSA id ffacd0b85a97d-390cd86cc26sm1495240f8f.30.2025.02.25.00.20.16 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 25 Feb 2025 00:20:16 -0800 (PST) From: Sharlatan Hellseher To: bug-guix@gnu.org Subject: bioinformatics: freebayes@1.3.7: All tests fail. Date: Tue, 25 Feb 2025 08:20:00 +0000 Message-ID: <875xkya11r.fsf@gmail.com> MIME-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha512; protocol="application/pgp-signature" Received-SPF: pass client-ip=2a00:1450:4864:20::436; envelope-from=sharlatanus@gmail.com; helo=mail-wr1-x436.google.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 1.0 (+) X-Debbugs-Envelope-To: submit Cc: rekado@elephly.net, pjotr.guix@thebird.nl X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.0 (/) --=-=-= Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Hi, I'm checking for any failing packages related to Python and found this one. Trying to refresh it to the latest version did not help, it's heavily patched and might be something changed/not compatible with current Guix. =2D-8<---------------cut here---------------start------------->8--- guix time-machine --commit=3D150df457d1e269790f184510c58d031ee00a9ebb -- bu= ild freebayes <...> =E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2= =80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80= =95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95= =E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2= =80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80= =95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95= =E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2= =80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80= =95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95=E2=80=95= =E2=80=95=E2=80=95=E2=80=95 Summary of Failures: 1/5 T03 FAIL 0.19s exit status 1 2/5 T00 FAIL 0.26s exit status 1 3/5 T01 FAIL 0.48s exit status 1 4/5 T02 FAIL 0.51s exit status 1 5/5 T01b FAIL 0.71s exit status 1 Ok: 0 Expected Fail: 0 Fail: 5 Unexpected Pass: 0 Skipped: 0 Timeout: 0 Full log written to /tmp/guix-build-freebayes-1.3.7.drv-0/build/meson-logs/= testlog.txt error: in phase 'check': uncaught exception: %exception #<&invoke-error program: "meson" arguments: ("test" "--print-err= orlogs" "-t" "0") exit-status: 5 term-signal: #f stop-signal: #f> phase `check' failed after 0.9 seconds command "meson" "test" "--print-errorlogs" "-t" "0" failed with status 5 build process 18 exited with status 256 builder for `/gnu/store/0i78q2x92mx3rbgc0q16nvng15gr2lnl-freebayes-1.3.7.dr= v' failed with exit code 1 build of /gnu/store/0i78q2x92mx3rbgc0q16nvng15gr2lnl-freebayes-1.3.7.drv fa= iled View build log at '/var/log/guix/drvs/0i/78q2x92mx3rbgc0q16nvng15gr2lnl-fre= ebayes-1.3.7.drv.gz'. =2D-8<---------------cut here---------------end--------------->8--- =2D-- Oleg --=-=-= Content-Type: application/pgp-signature; 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[86.8.111.200]) by smtp.gmail.com with ESMTPSA id ffacd0b85a97d-3a4d9f09622sm4970449f8f.98.2025.05.27.02.16.56 for <76541-done@debbugs.gnu.org> (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 27 May 2025 02:16:56 -0700 (PDT) From: Sharlatan Hellseher To: 76541-done@debbugs.gnu.org Subject: bioinformatics: freebayes@1.3.7: All tests fail. 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