GNU bug report logs - #76201
[PATCH] Bump revision to fix a bug with unintended removal of NEWS line from previous PR

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH] Bump revision to fix a bug with unintended removal of NEWS
 line from previous PR
Date: Tue, 11 Feb 2025 11:54:27 +0000

Change-Id: Id40d7d18c644c112500fed68c22633b33195e899
---
 gnu/packages/bioinformatics.scm | 107 ++++++++++++++++----------------
 1 file changed, 54 insertions(+), 53 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6b2e552585..a1690392af 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -856,63 +856,64 @@ (define-public r-bedtorch
       (license license:expat))))
 
 (define-public r-bpcells
-  (package
-    (name "r-bpcells")
-    (version "0.3.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/bnprks/BPCells")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "12h1di45fg06nhsliii7v0h1z567pkpis1xm4ar1qr8ns1n8iljw"))))
-    (properties `((upstream-name . "BPCells")))
-    (build-system r-build-system)
-    (arguments
-     (list
-      #:phases
-      '(modify-phases %standard-phases
-         (add-after 'unpack 'chdir
-           (lambda _ (chdir "r"))))))
-    (propagated-inputs
-     (list r-dplyr
-           r-ggplot2
-           r-ggrepel
-           r-hexbin
-           r-lifecycle
-           r-magrittr
-           r-matrix
-           r-patchwork
-           r-rcolorbrewer
-           r-rcpp
-           r-rcppeigen
-           r-readr
-           r-rlang
-           r-scales
-           r-scattermore
-           r-stringr
-           r-tibble
-           r-tidyr
-           r-vctrs
+  (let ((commit "966820b8da473ad2d4fc85354f280d926364abb7")
+        (revision "1"))
+    (package
+      (name "r-bpcells")
+      (version (git-version "0.3.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/bnprks/BPCells")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1ig23cqsycgp96x71y6504vkd1sjjpl05vvi7ikly32rvij94nph"))))
+      (properties `((upstream-name . "BPCells")))
+      (build-system r-build-system)
+      (arguments
+       (list
+        #:phases '(modify-phases %standard-phases
+                    (add-after 'unpack 'chdir
+                      (lambda _
+                        (chdir "r"))))))
+      (propagated-inputs (list r-dplyr
+                               r-ggplot2
+                               r-ggrepel
+                               r-hexbin
+                               r-lifecycle
+                               r-magrittr
+                               r-matrix
+                               r-patchwork
+                               r-rcolorbrewer
+                               r-rcpp
+                               r-rcppeigen
+                               r-readr
+                               r-rlang
+                               r-scales
+                               r-scattermore
+                               r-stringr
+                               r-tibble
+                               r-tidyr
+                               r-vctrs
 
-           ;; Suggested packages
-           r-genomicranges
-           r-igraph
-           r-iranges
-           r-matrixstats))
-    (inputs (list hdf5 zlib))
-    (native-inputs (list pkg-config))
-    (home-page "https://github.com/bnprks/BPCells")
-    (synopsis "Single cell counts matrices to PCA")
-    (description
-     "This is a package providing efficient operations for single cell
+                               ;; Suggested packages
+                               r-genomicranges
+                               r-igraph
+                               r-iranges
+                               r-matrixstats))
+      (inputs (list hdf5 zlib))
+      (native-inputs (list pkg-config))
+      (home-page "https://github.com/bnprks/BPCells")
+      (synopsis "Single cell counts matrices to PCA")
+      (description
+       "This is a package providing efficient operations for single cell
 ATAC-seq fragments and RNA counts matrices.  It is interoperable with standard
 file formats, and introduces efficient bit-packed formats that allow large
 storage savings and increased read speeds.")
-    ;; Either license
-    (license (list license:asl2.0 license:expat))))
+      ;; Either license
+      (license (list license:asl2.0 license:expat)))))
 
 (define-public r-btools
   (let ((commit "fa21d4ca01d37ea4d98b45582453f3bf95cbc2b5")

base-commit: 23c39e0d1bff210c3bea35cc666a4421c5d1f165
-- 
2.43.0

Message #10 received at 76201-done <at> debbugs.gnu.org (full text, mbox):

From: "Navid.Afkhami <at> mdc-berlin.de" <Navid.Afkhami <at> mdc-berlin.de>
To: "76201-done <at> debbugs.gnu.org" <76201-done <at> debbugs.gnu.org>
Subject: Closing this issue
Date: Thu, 13 Feb 2025 16:38:24 +0000

[Message part 1 (text/plain, inline)]

Hi,

 

I am closing this because the commit message is wrong.

 

 

- -  

Navid Afkhami

High Performance Computing (HPC)

Max Delbrück Center for Molecular Medicine (MDC)

Robert-Rössle-Straße 10, 13125 Berlin

Phone: +49 30 9406 1316

Email:   navid.afkhami <at> mdc-berlin.de

 

[Message part 2 (text/html, inline)]

[smime.p7s (application/pkcs7-signature, attachment)]

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