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#76073
[PATCH] gnu: Add python-cnmf.
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Message #10 received at 76073-done <at> debbugs.gnu.org (full text, mbox):
[Message part 1 (text/plain, inline)]
Hi,
Thank you for the patch.
I've applied some cosmetic adjustments:
--8<---------------cut here---------------start------------->8---
@@ -2596,34 +2596,36 @@ (define-public python-cnmf
(build-system pyproject-build-system)
(arguments
(list
- #:tests? #f ;There are no tests
- #:phases '(modify-phases %standard-phases
- (add-before 'check 'pre-check
- (lambda _
- (setenv "MPLCONFIGDIR" "/tmp")))
- ;; Numba needs a writable dir to cache functions.
- (add-before 'build 'set-numba-cache-dir
- (lambda _
- (setenv "NUMBA_CACHE_DIR" "/tmp"))))))
- (propagated-inputs (list python-anndata
- python-fastcluster
- python-matplotlib
- python-numba
- python-numpy
- python-palettable
- python-pandas
- python-pyyaml
- python-scanpy
- python-scikit-learn
- python-scipy))
- (native-inputs (list python-setuptools python-wheel))
+ #:tests? #f ; no tests in git checkout and PyPI archive
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'set-envs
+ (lambda _
+ (setenv "MPLCONFIGDIR" "/tmp")
+ ;; Numba needs a writable dir to cache functions.
+ (setenv "NUMBA_CACHE_DIR" "/tmp"))))))
+ (native-inputs
+ (list python-setuptools
+ python-wheel))
+ (propagated-inputs
+ (list python-anndata
+ python-fastcluster
+ python-matplotlib
+ python-numba
+ python-numpy
+ python-palettable
+ python-pandas
+ python-pyyaml
+ python-scanpy
+ python-scikit-learn
+ python-scipy))
(home-page "https://github.com/dylkot/cNMF")
(synopsis "Consensus NMF for scRNA-Seq data")
(description
- "This tool offers a pipeline for inferring gene expression programs from scRNA-Seq.
-It takes a count matrix (N cells X G genes) as input and produces a (K x G) matrix of
-gene expression programs (GEPs) and a (N x K) matrix specifying the usage of each
-program for each cell in the data.")
+ "This tool offers a pipeline for inferring gene expression programs from
+scRNA-Seq. It takes a count matrix (N cells X G genes) as input and produces
+a (K x G) matrix of gene expression programs (GEPs) and a (N x K) matrix
+specifying the usage of each program for each cell in the data.")
(license license:expat)))
--8<---------------cut here---------------end--------------->8---
Pushed to master as 985c0fd63c1f0c1f2ab8adaac3109ccdad258a28
--
Oleg
[signature.asc (application/pgp-signature, inline)]
This bug report was last modified 159 days ago.
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