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Reply-To: bug#75602 <75602@debbugs.gnu.org> Date: Sun, 22 Jun 2025 18:34:14 +0000 retitle 75602 [PATCH] gnu: Add r-rpanglaodb. reassign 75602 guix-patches submitter 75602 Navid Afkhami severity 75602 normal tag 75602 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Thu Jan 16 06:45:15 2025 Received: (at submit) by debbugs.gnu.org; 16 Jan 2025 11:45:15 +0000 Received: from localhost ([127.0.0.1]:60266 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tYOJG-0005be-Vd for submit@debbugs.gnu.org; Thu, 16 Jan 2025 06:45:15 -0500 Received: from lists.gnu.org ([2001:470:142::17]:47104) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tYOJB-0005WE-4P for submit@debbugs.gnu.org; Thu, 16 Jan 2025 06:45:12 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tYOJ5-000723-J6 for guix-patches@gnu.org; Thu, 16 Jan 2025 06:45:03 -0500 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tYOJ2-0008M6-U4 for guix-patches@gnu.org; Thu, 16 Jan 2025 06:45:03 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1737027887; x=1738842288; bh=4VtyDwxjDwkBNen +5qxrvHZKM9j/Ts6ldpAVEghU2O4=; b=BTw6T4UFyaxRvCNdZaHJ1czh6jv5CHh 8DAykRNwPuJtVTKxaAtuBMYUjVbE2M+q4sSBfZelswKekV1jTY0JlYgS1X2xV8fo cIFVmyOaeDA52N0elmrY4IKeCC9vtKbBVCQY7TQb/aqDmwqo57FnXK4vj2cNjHII ELK9xihdV89E= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 98BD6A0144 for ; Thu, 16 Jan 2025 12:44:44 +0100 (CET) Received: from localhost (141.80.121.117) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.14; Thu, 16 Jan 2025 12:44:43 +0100 From: Navid Afkhami To: Subject: [PATCH] gnu: Add r-rpanglaodb. Date: Thu, 16 Jan 2025 11:44:35 +0000 Message-ID: <3614a26361e87331475f97f6a06507eaf8c7fe14.1737027875.git.navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.43.0 MIME-Version: 1.0 X-Debbugs-Cc: Laurent Gatto , Ricardo Wurmus , Simon Tournier Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.121.117] X-ClientProxiedBy: SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3223-9.1.2019-28926.007 X-TM-AS-Result: No-10--5.008400-5.000000 X-TMASE-MatchedRID: a3KJLn6RIiIEZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhdqK Kei3fK/BuP2uihwIy0iu5Y9WGrdMHhV9IJL+D0rbju2XlcEx9HSsPOBR7D3wyfqz73OmCSZJ+3D GARmE5RD8lhO/Rdqac3pbIhOtEPScwui2PufQomuwHXnHVkAsxb2XNUZZqZaA4ftEeSASkbICZp I9UgJMHqJYuGaIjh0/7lupSRApbpa6XEyrDLNWUZa+5iA7xXkPH4pNnFLAi64iSQ1aAXUtjrHhF heooENcAmR/NelWpL+sXWLMx8fIMX7cGd19dSFd X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--5.008400-5.000000 X-TMASE-Version: SMEX-14.0.0.3223-9.1.2019-28926.007 X-TM-SNTS-SMTP: 8816DFEB2F8523C830D0E04B6612EA00DD082869893E9D5C8ABAF743E96F2A872000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, RCVD_IN_VALIDITY_RPBL_BLOCKED=0.001, RCVD_IN_VALIDITY_SAFE_BLOCKED=0.001, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit Cc: Navid Afkhami X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/cran.scm (r-rpanglaodb): New variable. Change-Id: I526a9bc52b77c97c3c85fbe4fd235cb53254495c --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 98597e3bbe..7489954875 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -11104,6 +11104,27 @@ (define-public r-rmysql the RMariaDB package.") (license license:gpl2))) +(define-public r-rpanglaodb + (package + (name "r-rpanglaodb") + (version "0.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "rPanglaoDB" version)) + (sha256 + (base32 "1ykzih3idgp2yhbw4039hhhzv0nmrmn3wx2c4dxmgp5qzhrg42nf")))) + (properties `((upstream-name . "rPanglaoDB"))) + (build-system r-build-system) + (propagated-inputs (list r-matrix r-pbapply r-seurat r-xml r-xml2)) + (home-page "https://github.com/dosorio/rPanglaoDB/") + (synopsis + "Download and merge Single-Cell RNA-Seq data from the PanglaoDB database") + (description + "This R package downloads labeled single-cell RNA-seq data from PanglaoDB. +It merges the data into a Seurat object for streamlined analysis.") + (license license:gpl3))) + (define-public r-rpmm (package (name "r-rpmm") base-commit: 15a41ec5a7f0629f78ede29bd7867cd8dc22c992 prerequisite-patch-id: 1a98936f928270aba746a93035ce5b43e9ac73e2 -- 2.43.0 From debbugs-submit-bounces@debbugs.gnu.org Thu Jan 16 08:04:42 2025 Received: (at 75602-done) by debbugs.gnu.org; 16 Jan 2025 13:04:42 +0000 Received: from localhost ([127.0.0.1]:60413 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tYPY9-0003xb-Vj for submit@debbugs.gnu.org; Thu, 16 Jan 2025 08:04:42 -0500 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21118) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from ) id 1tYPY5-0003xN-OY for 75602-done@debbugs.gnu.org; Thu, 16 Jan 2025 08:04:39 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1737032674; cv=none; d=zohomail.com; s=zohoarc; b=LaJNz6IJPzwnwtnMvhOuX+tG9euBGJ3yqpIEDinNSziqBgwAK3n7mTdnn6b5hzly2A1DPQzHVznvha16jQ6zrRZcPTijde/wAJeC6okv6GazXRQwbo/UhnbuUCQrX6Fe5sL0oAGnsKnJwoDFfQ3+TigDV+eAyaFTPP/ECJCNNfY= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1737032674; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=QL85OJa4/G3Mslbyqar9npF/sqTfeS21Vz+ZOL9+uSxg0zPXtJDf+rzO9VEh4W/gPvBjcR2Vj1WuIeKSGOQI66RlaNJ2vdpkH+ZiXy50elj5CRxh2r+QXSECQHvhtPhZkcKwXy6mGUD5rWzgizUp1F2asfyQ5BLdZnqb1ZJOWXw= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1737032674; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=RXifHlGEwcPe+/qwMs3//nqlaPWxFIUMLgffHI9uISWxgfiiPlEGbInygPFzOJZn Eu+sG20Q79Nxw5vwvVn55JjX/TT02WU5OV+YSxLzZDLVizgUdoSD95fqdMkVu27Tg4d r/OrvlX0sgNfBP4/wmqW7DOaXWPMucm+giXE2wSM= Received: by mx.zohomail.com with SMTPS id 1737032672373706.5465126408931; Thu, 16 Jan 2025 05:04:32 -0800 (PST) From: Ricardo Wurmus To: 75602-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-rpanglaodb. User-Agent: mu4e 1.12.7; emacs 29.4 Date: Thu, 16 Jan 2025 14:04:28 +0100 Message-ID: <87plkmhpur.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 75602-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied, thanks! -- Ricardo From unknown Sun Jun 22 11:34:14 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Fri, 14 Feb 2025 12:24:06 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator