GNU bug report logs - #75558
[PATCH] gnu: python-cyvcf2: Update to 0.31.1

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Package: guix-patches;

Reported by: Alexis Simon <alexis.simon <at> runbox.com>

Date: Tue, 14 Jan 2025 16:14:02 UTC

Severity: normal

Tags: patch

Done: jgart <jgart <at> dismail.de>

Bug is archived. No further changes may be made.

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Report forwarded to rekado <at> elephly.net, guix-patches <at> gnu.org:
bug#75558; Package guix-patches. (Tue, 14 Jan 2025 16:14:02 GMT) Full text and rfc822 format available.
Acknowledgement sent to Alexis Simon <alexis.simon <at> runbox.com>:
New bug report received and forwarded. Copy sent to rekado <at> elephly.net, guix-patches <at> gnu.org. (Tue, 14 Jan 2025 16:14:02 GMT) Full text and rfc822 format available.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Alexis Simon <alexis.simon <at> runbox.com>
To: guix-patches <at> gnu.org
Cc: Alexis Simon <alexis.simon <at> runbox.com>
Subject: [PATCH] gnu: python-cyvcf2: Update to 0.31.1
Date: Tue, 14 Jan 2025 17:13:01 +0100

* gnu/packages/bioinformatics.scm (python-cyvcf2): Update to 0.31.1 and fix build failure.

Change-Id: Icc5057cf9f5e6ba141e6e29e8f4db657cd04c1d2
---
 gnu/packages/bioinformatics.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 34a39a48f1..35f1a76fb1 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2357,7 +2357,7 @@ (define-public python-cmseq
 (define-public python-cyvcf2
   (package
     (name "python-cyvcf2")
-    (version "0.30.28")
+    (version "0.31.1")
     (source
      (origin
        (method git-fetch)
@@ -2366,7 +2366,7 @@ (define-public python-cyvcf2
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "16yhfax509zyip8kkq2b0lflx5bdq5why7d785ayrqyzzq2rxqkk"))
+        (base32 "02x7ic2q4x3sfwx9n2sxg0a79iifjal0a68fqp9ljsfvdx4b7nq5"))
        (modules '((guix build utils)))
        (snippet
         ;; Delete bundled library
@@ -2395,7 +2395,7 @@ (define-public python-cyvcf2
               (setenv "CYTHONIZE" "1")
               (setenv "CYVCF2_HTSLIB_MODE" "EXTERNAL"))))))
     (inputs (list curl htslib libdeflate openssl zlib))
-    (native-inputs (list python-cython python-pytest))
+    (native-inputs (list python-cython python-pytest python-setuptools python-wheel))
     (propagated-inputs
      (list python-click
            python-coloredlogs

base-commit: d663d4b6cae2289bcdd8bdcd02d58ed30769f1e2
-- 
2.45.2
Reply sent to jgart <jgart <at> dismail.de>:
You have taken responsibility. (Wed, 15 Jan 2025 03:15:02 GMT) Full text and rfc822 format available.
Notification sent to Alexis Simon <alexis.simon <at> runbox.com>:
bug acknowledged by developer. (Wed, 15 Jan 2025 03:15:02 GMT) Full text and rfc822 format available.

Message #10 received at 75558-done <at> debbugs.gnu.org (full text, mbox):

From: jgart <jgart <at> dismail.de>
To: 75558-done <at> debbugs.gnu.org
Cc: Alexis Simon <alexis.simon <at> runbox.com>
Subject: Re: [PATCH] gnu: python-cyvcf2: Update to 0.31.1
Date: Tue, 14 Jan 2025 21:13:53 -0600

Thanks! Applied.
-- 
all the best,
jgart
bug archived. Request was from Debbugs Internal Request <help-debbugs <at> gnu.org> to internal_control <at> debbugs.gnu.org. (Wed, 12 Feb 2025 12:24:10 GMT) Full text and rfc822 format available.
This bug report was last modified 183 days ago.

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