GNU bug report logs - #74546
[PATCH 0/3] Updating Open MPI and its dependencies

Previous Next

To add a comment to this bug, you must first unarchive it, by sending
a message to control AT debbugs.gnu.org, with unarchive 74546 in the body.
You can then email your comments to 74546 AT debbugs.gnu.org in the normal way.

Toggle the display of automated, internal messages from the tracker.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Ludovic Courtès <ludo <at> gnu.org>
To: guix-patches <at> gnu.org
Cc: Ludovic Courtès <ludo <at> gnu.org>
Subject: [PATCH 0/3] Updating Open MPI and its dependencies
Date: Tue, 26 Nov 2024 19:02:05 +0100

Hello!

This upgrades Open MPI and its direct dependencies.

Interestingly, while most of it was built and tested
at <https://guix.bordeaux.inria.fr/jobset/guix-hpc-cutting-edge>,
the ucx upgrade was not tested as such: the manifest there
uses the ‘with-latest’ transformation, which dismisses patches
(and the patch needed to be rebased anyway).

So when checking openmpi <at> 4 and openmpi <at> 5 with these changes,
I had to rebuild a bit.

Ludo’.

Ludovic Courtès (3):
  gnu: ucx: Update to 1.17.0.
  gnu: rdma-core: Update to 54.0.
  gnu: openmpi <at> 5: Update to 5.0.6.

 gnu/packages/fabric-management.scm            |  4 ++--
 gnu/packages/linux.scm                        |  4 ++--
 gnu/packages/mpi.scm                          |  4 ++--
 .../patches/ucx-tcp-iface-ioctl.patch         | 22 +++++++++----------
 4 files changed, 17 insertions(+), 17 deletions(-)


base-commit: f8979b4bcc8772d02640f6f665b4195380d57df9
-- 
2.46.0

Message #8 received at 74546 <at> debbugs.gnu.org (full text, mbox):

From: Ludovic Courtès <ludo <at> gnu.org>
To: 74546 <at> debbugs.gnu.org
Cc: Ludovic Courtès <ludovic.courtes <at> inria.fr>
Subject: [PATCH 1/3] gnu: ucx: Update to 1.17.0.
Date: Tue, 26 Nov 2024 19:05:00 +0100

From: Ludovic Courtès <ludovic.courtes <at> inria.fr>

* gnu/packages/fabric-management.scm (ucx): Update to 1.17.0.
* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Rebase.

Change-Id: I2089de93da88f4f81c4b233eb03abae1f41dfe7f
---
 gnu/packages/fabric-management.scm            |  4 ++--
 .../patches/ucx-tcp-iface-ioctl.patch         | 22 +++++++++----------
 2 files changed, 13 insertions(+), 13 deletions(-)

diff --git a/gnu/packages/fabric-management.scm b/gnu/packages/fabric-management.scm
index 7e539406db..6bf0387cef 100644
--- a/gnu/packages/fabric-management.scm
+++ b/gnu/packages/fabric-management.scm
@@ -185,7 +185,7 @@ (define-public ibutils
 (define-public ucx
   (package
     (name "ucx")
-    (version "1.15.0")
+    (version "1.17.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -195,7 +195,7 @@ (define-public ucx
               (patches (search-patches "ucx-tcp-iface-ioctl.patch"))
               (sha256
                (base32
-                "1mk46vyfp8hsivk88s8gv0nf458jfs59fczpf66wwa3a9yp324jp"))))
+                "09182kx60kq7iyjyz3mpcrgp1mm0lnpc0f4hd4hlw5yyabkxrpa1"))))
     (build-system gnu-build-system)
     (arguments
      (list
diff --git a/gnu/packages/patches/ucx-tcp-iface-ioctl.patch b/gnu/packages/patches/ucx-tcp-iface-ioctl.patch
index 2a0e4ce138..49038b90f6 100644
--- a/gnu/packages/patches/ucx-tcp-iface-ioctl.patch
+++ b/gnu/packages/patches/ucx-tcp-iface-ioctl.patch
@@ -6,7 +6,7 @@ names of the available TCP network interfaces.
 Initially submitted at <https://github.com/openucx/ucx/pull/4462>.
 
 diff --git a/src/uct/tcp/tcp_iface.c b/src/uct/tcp/tcp_iface.c
-index 6a6cd34fa..af32bb2e9 100644
+index f90d54fef..a2f74dc32 100644
 --- a/src/uct/tcp/tcp_iface.c
 +++ b/src/uct/tcp/tcp_iface.c
 @@ -18,6 +18,8 @@
@@ -18,9 +18,9 @@ index 6a6cd34fa..af32bb2e9 100644
  
  #define UCT_TCP_IFACE_NETDEV_DIR "/sys/class/net"
  
-@@ -875,6 +877,85 @@ static UCS_CLASS_DEFINE_NEW_FUNC(uct_tcp_iface_t, uct_iface_t, uct_md_h,
-                                  uct_worker_h, const uct_iface_params_t*,
-                                  const uct_iface_config_t*);
+@@ -873,6 +875,85 @@ static int uct_tcp_is_bridge(const char *if_name)
+     return (stat(path, &st) == 0) && S_ISDIR(st.st_mode);
+ }
  
 +/* Fetch information about available network devices through an ioctl.  */
 +static ucs_status_t uct_tcp_query_devices_ioctl(uct_md_h md,
@@ -104,11 +104,11 @@ index 6a6cd34fa..af32bb2e9 100644
  ucs_status_t uct_tcp_query_devices(uct_md_h md,
                                     uct_tl_device_resource_t **devices_p,
                                     unsigned *num_devices_p)
-@@ -893,9 +974,9 @@ ucs_status_t uct_tcp_query_devices(uct_md_h md,
+@@ -890,9 +971,9 @@ ucs_status_t uct_tcp_query_devices(uct_md_h md,
  
-     dir = opendir(UCT_TCP_IFACE_NETDEV_DIR);
-     if (dir == NULL) {
--        ucs_error("opendir(%s) failed: %m", UCT_TCP_IFACE_NETDEV_DIR);
+     n = scandir(UCT_TCP_IFACE_NETDEV_DIR, &entries, NULL, alphasort);
+     if (n == -1) {
+-        ucs_error("scandir(%s) failed: %m", UCT_TCP_IFACE_NETDEV_DIR);
 -        status = UCS_ERR_IO_ERROR;
 -        goto out;
 +        /* When /sys is unavailable, as can be the case in a container,
@@ -117,10 +117,10 @@ index 6a6cd34fa..af32bb2e9 100644
      }
  
      devices     = NULL;
-@@ -963,7 +1044,6 @@ ucs_status_t uct_tcp_query_devices(uct_md_h md,
+@@ -959,7 +1040,6 @@ out_release:
+     }
  
- out_closedir:
-     closedir(dir);
+     free(entries);
 -out:
      return status;
  }
-- 
2.46.0

Message #11 received at 74546 <at> debbugs.gnu.org (full text, mbox):

From: Ludovic Courtès <ludo <at> gnu.org>
To: 74546 <at> debbugs.gnu.org
Cc: Ludovic Courtès <ludo <at> gnu.org>
Subject: [PATCH 2/3] gnu: rdma-core: Update to 54.0.
Date: Tue, 26 Nov 2024 19:05:01 +0100

* gnu/packages/linux.scm (rdma-core): Update to 54.0.

Change-Id: I7f10ec57a1cad585abb08bdc30bd9e2aaafe7624
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 1b7b98f241..71d0b31683 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -7062,7 +7062,7 @@ (define-public ntfsfix/static
 (define-public rdma-core
   (package
     (name "rdma-core")
-    (version "48.0")
+    (version "54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/linux-rdma/rdma-core"
@@ -7070,7 +7070,7 @@ (define-public rdma-core
                                   version ".tar.gz"))
               (sha256
                (base32
-                "0h281dw2yph8pzfsr1wblqy6pb8nd9yj1pdf5c62zwc1l9b2fa3q"))))
+                "0q1gd4wrn7sb1l6qj6mqqlf8k4pk865b96cfnbgfxbgfs9q4jjm5"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f                      ;no tests
-- 
2.46.0

Message #14 received at 74546 <at> debbugs.gnu.org (full text, mbox):

From: Ludovic Courtès <ludo <at> gnu.org>
To: 74546 <at> debbugs.gnu.org
Cc: Ludovic Courtès <ludovic.courtes <at> inria.fr>
Subject: [PATCH 3/3] gnu: openmpi <at> 5: Update to 5.0.6.
Date: Tue, 26 Nov 2024 19:05:02 +0100

From: Ludovic Courtès <ludovic.courtes <at> inria.fr>

* gnu/packages/mpi.scm (openmpi-5): Update to 5.0.6.

Change-Id: I1aed5f0e76d64a215c4a13f445628ec206e31acf
---
 gnu/packages/mpi.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/mpi.scm b/gnu/packages/mpi.scm
index 20497242e5..41e57c3012 100644
--- a/gnu/packages/mpi.scm
+++ b/gnu/packages/mpi.scm
@@ -318,7 +318,7 @@ (define-public openmpi openmpi-4)
 (define-public openmpi-5
   (package
     (inherit openmpi)
-    (version "5.0.3")
+    (version "5.0.6")
     (source
      (origin
        (method url-fetch)
@@ -326,7 +326,7 @@ (define-public openmpi-5
                            (version-major+minor version)
                            "/downloads/openmpi-" version ".tar.bz2"))
        (sha256
-        (base32 "02x9xmpggw77mdpikjjx83j6i4v3gkqbncda73lk5axk0vr841cr"))))
+        (base32 "0mw1z4ppnlvxngwd58kl5q26qmvf3bgjkd4r8wjpqis3pky86hdx"))))
 
     (inputs (modify-inputs (package-inputs openmpi)
               ;; As of Open MPI 5.0.X, PMIx is used to communicate
-- 
2.46.0

Message #19 received at 74546-done <at> debbugs.gnu.org (full text, mbox):

From: Ludovic Courtès <ludo <at> gnu.org>
To: 74546-done <at> debbugs.gnu.org
Cc: Efraim Flashner <efraim <at> flashner.co.il>
Subject: Re: [bug#74546] [PATCH 0/3] Updating Open MPI and its dependencies
Date: Sun, 01 Dec 2024 18:01:00 +0100

Ludovic Courtès <ludo <at> gnu.org> skribis:

>   gnu: ucx: Update to 1.17.0.
>   gnu: rdma-core: Update to 54.0.
>   gnu: openmpi <at> 5: Update to 5.0.6.

Pushed as 15647355e5e7a67a7d4b372cf34b20e3710fe25d following a
discussion with Efraim on IRC.

Ludo’.

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.