From unknown Sun Jun 22 11:47:20 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#74528] [PATCH] Packaged r-highs for Guix proper. Resent-From: Navid Afkhami Original-Sender: "Debbugs-submit" Resent-CC: laurent.gatto@gmail.com, rekado@elephly.net, zimon.toutoune@gmail.com, guix-patches@gnu.org Resent-Date: Mon, 25 Nov 2024 14:54:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 74528 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 74528@debbugs.gnu.org Cc: Navid Afkhami , Laurent Gatto , Ricardo Wurmus , Simon Tournier X-Debbugs-Original-To: X-Debbugs-Original-Xcc: Laurent Gatto , Ricardo Wurmus , Simon Tournier Received: via spool by submit@debbugs.gnu.org id=B.173254639012548 (code B ref -1); Mon, 25 Nov 2024 14:54:01 +0000 Received: (at submit) by debbugs.gnu.org; 25 Nov 2024 14:53:10 +0000 Received: from localhost ([127.0.0.1]:38440 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tFaSb-0003GI-Ae for submit@debbugs.gnu.org; Mon, 25 Nov 2024 09:53:09 -0500 Received: from lists.gnu.org ([209.51.188.17]:53020) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tFaSZ-0003GB-Qj for submit@debbugs.gnu.org; Mon, 25 Nov 2024 09:53:08 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tFaSY-0004DK-9w for guix-patches@gnu.org; Mon, 25 Nov 2024 09:53:06 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tFaSU-000500-E0 for guix-patches@gnu.org; Mon, 25 Nov 2024 09:53:05 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1732546378; x=1734360779; bh=+9uyFM6neLSYRSf XybpyRDP6xPHghbaQOpkttIxMDic=; b=DhoGHwH/BOFDE5LHn0STlWnMnmAy3q4 v8hiP38PcFs0KqIIi4SIeie4H+ZCqUYWU1AO/Acp6X1IjXOZzysSlTOtl8kv4YZL LlMLU4QncEA0NCzplN1DKGeZR7B+oynslwQCVfU4EbzPA8lVXJVDOn6s12ZyrUKf s9kiwPube97A= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 65F1A30016F for ; Mon, 25 Nov 2024 15:52:56 +0100 (CET) Received: from localhost (141.80.121.182) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.11; Mon, 25 Nov 2024 15:52:56 +0100 From: Navid Afkhami Date: Mon, 25 Nov 2024 14:52:47 +0000 Message-ID: <8b0089cc531812c2822b9a59a10bd54669156bcf.1732546367.git.navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.43.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.121.182] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3223-9.1.2019-28820.000 X-TM-AS-Result: No-10--4.351500-5.000000 X-TMASE-MatchedRID: HLZKLD98msyHRquV5bxJl1Ky0A6DtQlX7pj93msZ52E+Jg7sQdznaD54 s+ww6de1RNCpW1xLYRQ+Q7n7SBm129PZ2M/sMqgOUlO0zoIcpU6B1fO2o4QGcOSxnfO8XDh3QYQ m6VwnH6ZrcF33wz8IbBP+JbniMMUdVXS3CAt+DxgarEv/I2gPylwJ057ljktmGMiFJNqHVO458S arp97J84ckZT5abrxufI5+ZvwQWiPMnyy+KE/luu/BqrkQGRPamLdIfmTTV4MGZcXJRnxWcIHvH e1wSDBJIl7BQK926kEUXYN5pQPs4LWYA3/sRvRvT+u1ssd/x7priwk488+qotqkGs/LBEZa8EFY CHVRuBROWg+GSIftMY4TDtwwKftL X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--4.351500-5.000000 X-TMASE-Version: SMEX-14.0.0.3223-9.1.2019-28820.000 X-TM-SNTS-SMTP: 4959538C73FC5472CE5AB30EA050599708AD85BA259D7D3971F2A78EED85B5682000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -52 X-Spam_score: -5.3 X-Spam_bar: ----- X-Spam_report: (-5.3 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, RCVD_IN_MSPIKE_H2=-0.93, RCVD_IN_VALIDITY_RPBL_BLOCKED=0.001, RCVD_IN_VALIDITY_SAFE_BLOCKED=0.001, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) Modified gnu/packages/cran.scm Added: #:use-module (gnu packages bash) #:use-module (gnu packages cmake) #:use-module (gnu packages debian) And made chnages to the definition of the package: (define-public r-highs (package (name "r-highs") (version "0.1-10") (source (origin (method url-fetch) (uri (cran-uri "highs" version)) (sha256 (base32 "1vjmzbfydlm434fa1mkwwfcdhmn6sq4ppib26nxfa9zakr7h7q2c")))) (properties `((upstream-name . "highs"))) (build-system r-build-system) (inputs (list bash-minimal)) (propagated-inputs (list r-checkmate r-pkgconfig r-rcpp)) (native-inputs (list cmake-minimal debianutils gfortran)) (home-page "https://gitlab.com/roigrp/solver/highs") (synopsis "'HiGHS' Optimization Solver") (description "R interface to @code{HiGHS}, an optimization solver. It is designed for solving mixed-integer optimization problems with quadratic or linear objectives and linear constraints.") (license license:gpl2+))) Change-Id: Ibbf2214820e90d9e78a8c78577ec4de4ea1eb411 --- gnu/packages/cran.scm | 3 +++ 1 file changed, 3 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b2ac3893db..a5273f9e4e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -68,12 +68,15 @@ (define-module (gnu packages cran) #:use-module (gnu packages algebra) #:use-module (gnu packages autotools) #:use-module (gnu packages base) + #:use-module (gnu packages bash) #:use-module (gnu packages bioinformatics) #:use-module (gnu packages c) + #:use-module (gnu packages cmake) #:use-module (gnu packages compression) #:use-module (gnu packages crypto) #:use-module (gnu packages curl) #:use-module (gnu packages databases) + #:use-module (gnu packages debian) #:use-module (gnu packages fontutils) #:use-module (gnu packages fribidi) #:use-module (gnu packages gcc) base-commit: 9b1fb12978482ffb6d37c456343f05609b28b3e8 prerequisite-patch-id: e28e9621d28c7af767ea42c2c828d4d6b31359e1 -- 2.43.0 From unknown Sun Jun 22 11:47:20 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: Navid Afkhami Subject: bug#74528: closed (Closing this issue) Message-ID: References: <8b0089cc531812c2822b9a59a10bd54669156bcf.1732546367.git.navid.afkhami@mdc-berlin.de> X-Gnu-PR-Message: they-closed 74528 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 74528@debbugs.gnu.org Date: Mon, 25 Nov 2024 15:26:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1732548362-20394-1" This is a multi-part message in MIME format... ------------=_1732548362-20394-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #74528: [PATCH] Packaged r-highs for Guix proper. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 74528@debbugs.gnu.org. --=20 74528: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D74528 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1732548362-20394-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 74528-done) by debbugs.gnu.org; 25 Nov 2024 15:25:45 +0000 Received: from localhost ([127.0.0.1]:40053 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tFay8-0005IJ-VB for submit@debbugs.gnu.org; Mon, 25 Nov 2024 10:25:45 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:56957) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tFay6-0005Hy-E5 for 74528-done@debbugs.gnu.org; Mon, 25 Nov 2024 10:25:43 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= mime-version:content-type:content-type:content-language :accept-language:message-id:date:date:subject:subject:from:from :received:received; 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Date: Mon, 25 Nov 2024 14:52:47 +0000 Message-ID: <8b0089cc531812c2822b9a59a10bd54669156bcf.1732546367.git.navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.43.0 MIME-Version: 1.0 X-Debbugs-Cc: Laurent Gatto , Ricardo Wurmus , Simon Tournier Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.121.182] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3223-9.1.2019-28820.000 X-TM-AS-Result: No-10--4.351500-5.000000 X-TMASE-MatchedRID: HLZKLD98msyHRquV5bxJl1Ky0A6DtQlX7pj93msZ52E+Jg7sQdznaD54 s+ww6de1RNCpW1xLYRQ+Q7n7SBm129PZ2M/sMqgOUlO0zoIcpU6B1fO2o4QGcOSxnfO8XDh3QYQ m6VwnH6ZrcF33wz8IbBP+JbniMMUdVXS3CAt+DxgarEv/I2gPylwJ057ljktmGMiFJNqHVO458S arp97J84ckZT5abrxufI5+ZvwQWiPMnyy+KE/luu/BqrkQGRPamLdIfmTTV4MGZcXJRnxWcIHvH e1wSDBJIl7BQK926kEUXYN5pQPs4LWYA3/sRvRvT+u1ssd/x7priwk488+qotqkGs/LBEZa8EFY CHVRuBROWg+GSIftMY4TDtwwKftL X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--4.351500-5.000000 X-TMASE-Version: SMEX-14.0.0.3223-9.1.2019-28820.000 X-TM-SNTS-SMTP: 4959538C73FC5472CE5AB30EA050599708AD85BA259D7D3971F2A78EED85B5682000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -52 X-Spam_score: -5.3 X-Spam_bar: ----- X-Spam_report: (-5.3 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, RCVD_IN_MSPIKE_H2=-0.93, RCVD_IN_VALIDITY_RPBL_BLOCKED=0.001, RCVD_IN_VALIDITY_SAFE_BLOCKED=0.001, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit Cc: Navid Afkhami X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) Modified gnu/packages/cran.scm Added: #:use-module (gnu packages bash) #:use-module (gnu packages cmake) #:use-module (gnu packages debian) And made chnages to the definition of the package: (define-public r-highs (package (name "r-highs") (version "0.1-10") (source (origin (method url-fetch) (uri (cran-uri "highs" version)) (sha256 (base32 "1vjmzbfydlm434fa1mkwwfcdhmn6sq4ppib26nxfa9zakr7h7q2c")))) (properties `((upstream-name . "highs"))) (build-system r-build-system) (inputs (list bash-minimal)) (propagated-inputs (list r-checkmate r-pkgconfig r-rcpp)) (native-inputs (list cmake-minimal debianutils gfortran)) (home-page "https://gitlab.com/roigrp/solver/highs") (synopsis "'HiGHS' Optimization Solver") (description "R interface to @code{HiGHS}, an optimization solver. It is designed for solving mixed-integer optimization problems with quadratic or linear objectives and linear constraints.") (license license:gpl2+))) Change-Id: Ibbf2214820e90d9e78a8c78577ec4de4ea1eb411 --- gnu/packages/cran.scm | 3 +++ 1 file changed, 3 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b2ac3893db..a5273f9e4e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -68,12 +68,15 @@ (define-module (gnu packages cran) #:use-module (gnu packages algebra) #:use-module (gnu packages autotools) #:use-module (gnu packages base) + #:use-module (gnu packages bash) #:use-module (gnu packages bioinformatics) #:use-module (gnu packages c) + #:use-module (gnu packages cmake) #:use-module (gnu packages compression) #:use-module (gnu packages crypto) #:use-module (gnu packages curl) #:use-module (gnu packages databases) + #:use-module (gnu packages debian) #:use-module (gnu packages fontutils) #:use-module (gnu packages fribidi) #:use-module (gnu packages gcc) base-commit: 9b1fb12978482ffb6d37c456343f05609b28b3e8 prerequisite-patch-id: e28e9621d28c7af767ea42c2c828d4d6b31359e1 -- 2.43.0 ------------=_1732548362-20394-1--