From unknown Sat Jun 21 10:44:01 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#74118 <74118@debbugs.gnu.org> To: bug#74118 <74118@debbugs.gnu.org> Subject: Status: [PATCH] gnu: Add r-raceid. Reply-To: bug#74118 <74118@debbugs.gnu.org> Date: Sat, 21 Jun 2025 17:44:01 +0000 retitle 74118 [PATCH] gnu: Add r-raceid. reassign 74118 guix-patches submitter 74118 Navid Afkhami severity 74118 normal tag 74118 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Wed Oct 30 15:08:54 2024 Received: (at submit) by debbugs.gnu.org; 30 Oct 2024 19:08:54 +0000 Received: from localhost ([127.0.0.1]:36894 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t6E3p-0005KC-NS for submit@debbugs.gnu.org; Wed, 30 Oct 2024 15:08:54 -0400 Received: from lists.gnu.org ([209.51.188.17]:57282) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t6E3m-0005K4-7z for submit@debbugs.gnu.org; Wed, 30 Oct 2024 15:08:51 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1t6E3f-0004bY-Hz for guix-patches@gnu.org; Wed, 30 Oct 2024 15:08:44 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1t6E3c-0007Qx-5c for guix-patches@gnu.org; Wed, 30 Oct 2024 15:08:42 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1730315316; x=1732129717; bh=2S5uY7M0z2SQ3Wo jfDianHFTSFJP0MzTE4rN4OekRbw=; b=ZwUhNx1Yd95NM0BU0EuuLl2spMbb2Ke 4NQTsNh8vudg8KsLlo3vPi6Ze3+aXLaJzg/7OZuf/LAvhTX+50aoINjoQsB+peEf ojdx9cSRqwJO3hFBNuMzCtWNkRnNsCGVVYswE27GVEx+xVgXfmqvf9iYdrSxTZ7b V2098iCZy3iM= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 20470300169 for ; Wed, 30 Oct 2024 20:08:36 +0100 (CET) Received: from localhost (141.80.121.92) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.11; Wed, 30 Oct 2024 20:08:35 +0100 From: Navid Afkhami To: Subject: [PATCH] gnu: Add r-raceid. Date: Wed, 30 Oct 2024 19:08:31 +0000 Message-ID: X-Mailer: git-send-email 2.43.0 MIME-Version: 1.0 X-Debbugs-Cc: Laurent Gatto , Ricardo Wurmus , Simon Tournier Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.121.92] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3223-9.1.2019-28764.001 X-TM-AS-Result: No-10--4.274400-5.000000 X-TMASE-MatchedRID: a3KJLn6RIiIEZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhdqK Kei3fK/BuP2uihwIy0iu5Y9WGrdMHmHL+cByob/Kb3Pl2Oyrc7BrcVVB7l3jO8+b4dvynxi2+3D GARmE5RA9X1CCUTLtRX3y4QLMAztck9ivTnwPC+ZZnFiE9hisyfVUZDyWvrKuD5teccobfJVbyC HfDNuoEznxJqun3snzhyRlPlpuvG6bCOivU2HrC/rjfNbSkSpoDwMDN8PkH7BNaZWRfrrf/6HVt esx4PxfYv5xWp7ekGm3dkgT7tJj27BaB2vCuyLwjPnNr1pSJT3YmlhGxgNbGCJmPFP0qRT5iQ5e rlTds7rox9rqorLqIj47jot1RqlnCuhB+Hs2Q+XFRuRzIFoKqH7cGd19dSFd X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--4.274400-5.000000 X-TMASE-Version: SMEX-14.0.0.3223-9.1.2019-28764.001 X-TM-SNTS-SMTP: 92817489FB74C612B43EA11C8E07587D7C8560D228346DB2CB804B66A67175D02000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, RCVD_IN_VALIDITY_CERTIFIED_BLOCKED=0.001, RCVD_IN_VALIDITY_RPBL_BLOCKED=0.001, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit Cc: Navid Afkhami X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/cran.scm (r-raceid): New variable. Change-Id: I337463c66040179f5a4a1622fb759a87ebd2344a --- gnu/packages/cran.scm | 47 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 47 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 6c0861509d..1c2efc6b4c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -13107,6 +13107,53 @@ (define-public r-shinyace environment within Shiny.") (license license:expat))) +(define-public r-raceid + (package + (name "r-raceid") + (version "0.3.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "RaceID" version)) + (sha256 + (base32 "0zqas0dfsvcbjzv2b83zy13pxyzfhh81xrfbzxq8a7ykk0nyrx26")))) + (properties `((upstream-name . "RaceID"))) + (build-system r-build-system) + (propagated-inputs (list r-cluster + r-coop + r-fateid + r-fnn + r-fpc + r-ggplot2 + r-harmony + r-ica + r-igraph + r-irlba + r-leiden + r-locfit + r-mass + r-matrix + r-matrixstats + r-pheatmap + r-princurve + r-quadprog + r-randomforest + r-rcolorbrewer + r-rcpp + r-rtsne + r-runner + r-umap + r-vegan)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=RaceID") + (synopsis + "Algorithm for inferring cell types from single-cell RNA-seq data") + (description + "This tool provides an algorithm to identify rare cell types in single-cell data. +It also identifies abundant cell types. The method is based on transcript +counts obtained with unique molecular identifies.") + (license license:gpl3))) + (define-public r-rafalib (package (name "r-rafalib") base-commit: d6f775c30c6f47e174f6110d1089edc6315600e4 prerequisite-patch-id: 54292fa0b75533f02730e2da44993ad685d4a432 prerequisite-patch-id: 360575ef7e49c4e4e6b52644964df061856aee57 prerequisite-patch-id: 3904682af2961b8cb06ced06ab62c60604114dad prerequisite-patch-id: 0e861c88ccc360c3a1bcd0ce92d90a9aeb1455c0 -- 2.43.0 From debbugs-submit-bounces@debbugs.gnu.org Fri Nov 01 07:28:50 2024 Received: (at 74118-done) by debbugs.gnu.org; 1 Nov 2024 11:28:50 +0000 Received: from localhost ([127.0.0.1]:48802 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t6ppi-0005Q9-0v for submit@debbugs.gnu.org; Fri, 01 Nov 2024 07:28:50 -0400 Received: from sender3-of-o59.zoho.com ([136.143.184.59]:21915) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t6ppf-0005Q3-E1 for 74118-done@debbugs.gnu.org; Fri, 01 Nov 2024 07:28:48 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1730460525; cv=none; d=zohomail.com; s=zohoarc; b=YGskXJOsO+GFNANJmjDnaOtvvXJeLndogii3Q/U2opXughHZERsMCWt35KMOAVFajYfXDFSNGYYIPiC7qMqs0l+ISHWUAv1wQYPtp6b/pB5X7mkHDWZnh1ZkCow+kJZkrBfwUAlBOF4aMiRgtKkiaYK6NVZ3/ExfZc8kV7VuJI8= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1730460525; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=hw+nKWBprQrHRM3rL0uzuPhTe9aAFqebRy18SiSf0+TRXqXw5i09uuXLgy6kAT6sRFZJ6hBp6MT7o2BtieN71+/f0UWgslSl8+LziDWGh5+I/AEbAgXeeCDBkm/GA8uQMRrGTrR7B6tSpnv/hVxHodrwRAHKxjumT2eOEo+Qqho= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1730460525; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=L06GCJehj1osQhDO9RhmipyVnISyQxgAWTSliJpUtOfiXImz6ujpg9v1qfNu54V9 tQcFau07FO342bSau433DDEm+L++wOJ8cORr51RWYeKmkchpzx3xsUqYjEuvrlSJtqu K8xgkfvRhADDVGXFYRk/K7QnrlsbGU9zlUSfInNc= Received: by mx.zohomail.com with SMTPS id 1730460523098760.9042237558829; Fri, 1 Nov 2024 04:28:43 -0700 (PDT) From: Ricardo Wurmus To: 74118-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-raceid. 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