GNU bug report logs - #74115
[PATCH] gnu: Add r-fateid.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#74115: closed ([PATCH] gnu: Add r-fateid.)
Date: Fri, 01 Nov 2024 11:28:03 +0000

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Your message dated Fri, 01 Nov 2024 12:27:30 +0100
with message-id <87jzdnjisd.fsf <at> elephly.net>
and subject line [PATCH] gnu: Add r-fateid.
has caused the debbugs.gnu.org bug report #74115,
regarding [PATCH] gnu: Add r-fateid.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
74115: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=74115
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Contact help-debbugs <at> gnu.org with problems

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From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add r-fateid.
Date: Wed, 30 Oct 2024 18:34:13 +0000

* gnu/packages/cran.scm (r-fateid): New variable.

Change-Id: If8d8dc20a0d377173a7428ebbfa238695a5d8002
---
 gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 212f305ba1..aa57134166 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1038,6 +1038,35 @@ (define-public r-emdist
 Distance (EMD).")
     (license license:expat)))
 
+(define-public r-fateid
+  (package
+    (name "r-fateid")
+    (version "0.2.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "FateID" version))
+       (sha256
+        (base32 "0sgvaqhqkmmkcsl53bm1jlfpzrvzfb5cz8k513nizfsi638vydlm"))))
+    (properties `((upstream-name . "FateID")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-locfit
+                             r-matrixstats
+                             r-pheatmap
+                             r-princurve
+                             r-randomforest
+                             r-rcolorbrewer
+                             r-rtsne
+                             r-som
+                             r-umap))
+    (native-inputs (list r-knitr))
+    (home-page "https://cran.r-project.org/package=FateID")
+    (synopsis "Quantification of fate bias in multipotent progenitors")
+    (description
+     "This package computes cell fate bias for multi-lineage single-cell data.
+It also provides visualization tools for analyzing these biases.")
+    (license license:gpl3)))
+
 (define-public r-fuzzyjoin
   (package
     (name "r-fuzzyjoin")

base-commit: d6f775c30c6f47e174f6110d1089edc6315600e4
prerequisite-patch-id: 54292fa0b75533f02730e2da44993ad685d4a432
prerequisite-patch-id: 360575ef7e49c4e4e6b52644964df061856aee57
-- 
2.43.0

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 74115-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-fateid.
Date: Fri, 01 Nov 2024 12:27:30 +0100

Applied, thanks!

-- 
Ricardo

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