From debbugs-submit-bounces@debbugs.gnu.org Thu Sep 26 06:40:58 2024 Received: (at submit) by debbugs.gnu.org; 26 Sep 2024 10:40:58 +0000 Received: from localhost ([127.0.0.1]:55963 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1stlve-0005Dd-C0 for submit@debbugs.gnu.org; Thu, 26 Sep 2024 06:40:58 -0400 Received: from lists.gnu.org ([209.51.188.17]:58336) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1stlvc-0005DV-0i for submit@debbugs.gnu.org; Thu, 26 Sep 2024 06:40:56 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1stlv6-0002YW-TT for guix-patches@gnu.org; Thu, 26 Sep 2024 06:40:25 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1stlv4-0003BO-C9 for guix-patches@gnu.org; Thu, 26 Sep 2024 06:40:24 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1727347217; x=1729161618; bh=h0Dc7HHfW1g+D2V k8vsAdntCOl+b5UEacB9Cr6sh42k=; b=lvgqgYWFBOZ0yU4oZdSXEM/YIZvn0SH EzfukvNhNWB/E9FH93SEfpCRJr5ps69K8poc5lAZrSYX7jTMaumutBZ+bBXiC1S4 5meNdmWabx/1auXennzQN6intY5Izo+n0ZDagv7WckDIaVkTPPTNVT6MBUVXwr4l rLcOgcoaYtg4= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 720C4300169 for ; Thu, 26 Sep 2024 12:40:17 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.11; Thu, 26 Sep 2024 12:40:16 +0200 From: "Afkhami, Navid" To: Subject: [PATCH] gnu: Add r-cellchat-v2. Date: Thu, 26 Sep 2024 10:37:18 +0000 Message-ID: X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28688.006 X-TM-AS-Result: No-10--8.105600-5.000000 X-TMASE-MatchedRID: a3KJLn6RIiJYhP20o6vOMFY9XYa1m8xAJ3y+iqiko29rIVA3IGfCC6DE DQa+uiKUXJ5suMuDH9GX7N8/O92sJRFj276yv/MdYBS4BO08ckNf0iqNWpSwuKFRWC8HCKx2Cvc r5hls9wMJqqcJa51xiCgsp7v1bEBItNjjh/UFP1QvPS9LueAXm4DYprvBvWzMvTrVvr19501jc9 9KY0Ed8qODSWu0oxbKJP/2DvkXaK9aOxpgjiWHdVV0twgLfg8YpWu923L0/V5VXBne7Ngg0vBNK D3UvsONMTOCQwESo8QCqPHBq0h2D1gpWCbva+Mm X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--8.105600-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28688.006 X-TM-SNTS-SMTP: 15A27B47C228B7FBA229E4AA446553351BE99999D1782510E2C0C4044C5B32C22000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_VALIDITY_CERTIFIED_BLOCKED=0.001, RCVD_IN_VALIDITY_RPBL_BLOCKED=0.001, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit Cc: "Afkhami, Navid" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioinformatics.scm (r-cellchat-v2): New variable. Change-Id: Iae15f373aefa1c2a0899d5271cf8dddbbfdfa2bd --- gnu/packages/bioinformatics.scm | 66 +++++++++++++++++++++++++++++++++ 1 file changed, 66 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ad7baad590..91cf6a0e2b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14315,6 +14315,72 @@ (define-public r-cellchat communication networks from scRNA-seq data.") (license license:gpl3)))) +(define-public r-cellchat-v2 + (let ((commit "b05405af0f4f2cac99f2211e888d42de4c5a9d59") + (revision "1")) + (package + (name "r-cellchat-v2") + (version (git-version "2.1.2" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/jinworks/CellChat") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "14s7bl70xi21ivqr1c3qx6kjf1ndlyxag880xldqkfsqpksvyvkc")) + (snippet '(for-each delete-file + '("src/CellChat.so" "src/CellChat_Rcpp.o" + "src/RcppExports.o"))))) + (properties `((upstream-name . "CellChat"))) + (build-system r-build-system) + (propagated-inputs (list r-biocgenerics + r-biocneighbors + r-bslib + r-circlize + r-colorspace + r-complexheatmap + r-cowplot + r-dplyr + r-fnn + r-future + r-future-apply + r-ggalluvial + r-ggnetwork + r-ggplot2 + r-ggpubr + r-ggrepel + r-igraph + r-irlba + r-magrittr + r-matrix + r-nmf + r-patchwork + r-pbapply + r-plotly + r-plyr + r-rcolorbrewer + r-rcpp + r-rcppeigen + r-reshape2 + r-reticulate + r-rspectra + r-scales + r-shape + r-shiny + r-sna + r-stringr + r-svglite)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/jinworks/CellChat") + (synopsis + "Inference of cell-cell communication from single-cell and transcriptomics") + (description + "This R tool infers, visualizes, and analyzes cell-cell communication networks. +It supports scRNA-seq and spatially resolved transcriptomics data.") + (license license:gpl3)))) + (define-public r-copykat (let ((commit ;no tag "256de33dfc1b80a1a0ac9e098c5557f95a4e0d53") base-commit: f6715a4715eaed485300dffffa1b5e182ded3cea -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Nov 01 07:26:16 2024 Received: (at 73497-done) by debbugs.gnu.org; 1 Nov 2024 11:26:16 +0000 Received: from localhost ([127.0.0.1]:48763 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t6pnE-0005Lh-6r for submit@debbugs.gnu.org; Fri, 01 Nov 2024 07:26:16 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21119) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t6pnC-0005Lb-Au for 73497-done@debbugs.gnu.org; Fri, 01 Nov 2024 07:26:14 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1730460372; cv=none; d=zohomail.com; s=zohoarc; b=GQ/04ru2uS0M3+uaFwWF2NPCpgt+0tVUshh2p9c3soj01vhoRk3S8aWYXBjntfiKzmAX006poiJH2wht+K4op0AM+95D3uc6T4xu5nvKmFgqDBhiFmPeeK9Uz3gb1Hre0ylqjHYT7KsmvGRMjcFgTLJwxEUQ+uJbwFqnrZg5GFg= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1730460372; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=0Qx0kOwg9wd0S4OpU/v+j2WxbxR1cMBosHd65LGNdqo=; b=P5H2hN/QFHgxQMlh4AFllrCu1wsp5f7BLKJL5I7MGK64n4IH9tHDlQvrwX1DPxaNSGaG/lRiJEDglsIf7Gz1VoXtK03aBDVAUU9mf+qbPnzMXmTDWY6gLK3b9vI+/xm23ZspcSCjwwFoXYd9ZRG9uTulR+xc3G/IqNyXq/UAKiY= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1730460372; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=0Qx0kOwg9wd0S4OpU/v+j2WxbxR1cMBosHd65LGNdqo=; b=aru8P4J2wTm+OLR2l9zN+2Wwri9xDOPaJsSL4erEFyL9P8Lgdt35FWnizL58Ztbr caEWrYesNPZvIhSofl2C9Atg1gmLKZpAl0XhS4EksmuPYDaWN4/voMepYtEgwF6JIrF vMEFUD4TzWY3Y/8xht7T+7XUqWl1Tn9y/xEIarTg= Received: by mx.zohomail.com with SMTPS id 1730460371460397.5184018329318; Fri, 1 Nov 2024 04:26:11 -0700 (PDT) From: Ricardo Wurmus To: 73497-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-cellchat-v2. Date: Fri, 01 Nov 2024 12:26:08 +0100 Message-ID: <87wmhnjiun.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 73497-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) I renamed this to just r-cellchat (same package name), and the variable to "r-cellchat-2". Thanks! -- Ricardo From unknown Fri Jun 20 19:45:54 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Fri, 29 Nov 2024 12:24:22 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator