From unknown Fri Aug 15 04:07:38 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#72727 <72727@debbugs.gnu.org> To: bug#72727 <72727@debbugs.gnu.org> Subject: Status: [PATCH] gnu: Add r-spacexr. Reply-To: bug#72727 <72727@debbugs.gnu.org> Date: Fri, 15 Aug 2025 11:07:38 +0000 retitle 72727 [PATCH] gnu: Add r-spacexr. reassign 72727 guix-patches submitter 72727 "Afkhami, Navid" severity 72727 normal tag 72727 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Tue Aug 20 04:10:28 2024 Received: (at submit) by debbugs.gnu.org; 20 Aug 2024 08:10:28 +0000 Received: from localhost ([127.0.0.1]:59785 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sgJwh-0001oB-Ln for submit@debbugs.gnu.org; Tue, 20 Aug 2024 04:10:27 -0400 Received: from lists.gnu.org ([209.51.188.17]:47762) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sgJwf-0001o3-GR for submit@debbugs.gnu.org; Tue, 20 Aug 2024 04:10:26 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sgJvy-0001E7-DF for guix-patches@gnu.org; Tue, 20 Aug 2024 04:09:42 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sgJvw-00010N-4e for guix-patches@gnu.org; Tue, 20 Aug 2024 04:09:42 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1724141373; x=1725955774; bh=YUD8PJifIxjVAl/ RFH/784rt+1LZYT4s6SMDY55tWxU=; b=bBrOGNjzMjFZnnnhvZyCK/jNEC0O289 OV5MTgZmc810EXLDlLZw6MzlH/30NrMqUUohqKvPlSwEkpgyZ5OvGmyP8tDh7Mh4 uBjh/Tf+EvBcujrYgAj1Fyjhp8mSWC9FIy6Ub2dYT/hXl6pZiuNEYnccJKzCqntW qY7eU3ESsctc= Received: from SW-IT-P-EX1.mdc-berlin.net (mgw1.mdc-berlin.de [141.80.113.54]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 4F8C21601E9 for ; Tue, 20 Aug 2024 10:09:30 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.11; Tue, 20 Aug 2024 10:09:30 +0200 From: "Afkhami, Navid" To: Subject: [PATCH] gnu: Add r-spacexr. Date: Tue, 20 Aug 2024 08:07:04 +0000 Message-ID: <02122b27950c60f55dbfa860ebaf750c7ba8a360.1724141223.git.Navid.Afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28606.005 X-TM-AS-Result: No-10--5.152400-5.000000 X-TMASE-MatchedRID: I6rpFm0lrcNYhP20o6vOMFY9XYa1m8xAJ3y+iqiko29rIVA3IGfCC6DE DQa+uiKUXJ5suMuDH9GX7N8/O92sJRFj276yv/MdYBS4BO08ckNf0iqNWpSwuD4mDuxB3OdogyC DHnWW5JQMkbHh8hhHAEF0fWsfQ90fVXS3CAt+DxgarEv/I2gPylwJ057ljktmGJuJCTvCT4nRSb yPS2HFd9kALSJb7SMtz/1rSrj2fS726NrOfSk4Jd+ASoAwVB/kzCL1h4GDG+F6YYT/WTR2qQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--5.152400-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28606.005 X-TM-SNTS-SMTP: D9E3D4477076FD3A733F1A3BE7154170B7786C42B36F75718117F2C3850714EA2000:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit Cc: "Afkhami, Navid" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioinformatics.scm (r-spacexr): New variable. Change-Id: Icf2a7dd9d637d14d835c7a428093ba8daf25e25a --- gnu/packages/bioinformatics.scm | 45 +++++++++++++++++++++++++++++++++ 1 file changed, 45 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index eae0a29b90..56188309a8 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -22662,6 +22662,51 @@ (define-public r-catch value of physical insulation between neighboring domains.") (license license:gpl2+)))) +(define-public r-spacexr + (let ((commit "0a0861e3d1e16014a20e9b743d0e19d3b42231f3") + (revision "1")) + (package + (name "r-spacexr") + (version (git-version "2.2.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/dmcable/spacexr") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0hqrllzq2hi6dsr8nykn1yp7s3rcbjrv3m624b61n4nxnzza458a")))) + (properties `((upstream-name . "spacexr"))) + (build-system r-build-system) + (propagated-inputs (list r-compquadform + r-data-table + r-doparallel + r-dplyr + r-fields + r-foreach + r-ggplot2 + r-knitr + r-locfdr + r-matrix + r-metafor + r-mgcv + r-pals + r-quadprog + r-readr + r-reshape2 + r-rfast + r-rmarkdown + r-tibble)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/dmcable/spacexr") + (synopsis + "Cell type identification and differential expression in spatial transcriptomics") + (description + "This package is used for cell type identification in spatial transcriptomics. +It also handles cell type-specific differential expression.") + (license license:gpl3)))) + (define-public r-spectre (let ((commit "f6648ab3eb9499300d86502b5d60ec370ae9b61a") (revision "1")) base-commit: 58faaf4eaadafa09a97ab31103eb54bd2076a699 prerequisite-patch-id: dc2f4964edf0016b1e572e9f41129606c4fb3132 prerequisite-patch-id: 4ce0ef474ba0015be3d30c7eec8f094098beaec7 -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Nov 01 07:25:00 2024 Received: (at 72727-done) by debbugs.gnu.org; 1 Nov 2024 11:25:00 +0000 Received: from localhost ([127.0.0.1]:48736 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t6pm0-0005DB-Df for submit@debbugs.gnu.org; Fri, 01 Nov 2024 07:25:00 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21112) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t6ply-0005D3-4M for 72727-done@debbugs.gnu.org; Fri, 01 Nov 2024 07:24:58 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1730460296; cv=none; d=zohomail.com; s=zohoarc; b=mUJeLEpyH4UITC9x9Ga5vsVDeihEDrwRS6NUvPjM44OB7FystRHyF/H7xqXxx6X4hsTsMH/bmbImupuzXsPoy4YCxeEG++JonFjqd7A9LNUAXLRcKwKrqgn6KAQgg580NXOiDKmMmFc1gna3rNbKBOB5ZZ1sERdvfn1/i40Iv38= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1730460296; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=COFtQ7xynt5SppW2zkv4VAY62coZpNAIAHSl1/Zpyl4vgBRHFlnN/dbESntv9dLpnZYbbUJdYu1sIFS11LphZvcj8XU3cHG9XkxoXOdmCdLeqJIWrrLtddRma30UINL7tExGSXK8fuuEYSMMtgA9b/A0Q19l2vO5dtZo8lqjkrs= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1730460296; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=F0u3YWNbnU48L8ZY9TYudMJP1FeJK5LeabE78ODU0C29z+VcYw3eNMRdTbB76mYS cKPFlmurTCUyjOTiRolEFpiHaV67FXuvol+W1qNwhze96h5yhFgUKIQOX114Sodk3DL zeHKdY8VbfjU+CJTCagGKbt0a7fN1JM04xmBNZ0s= Received: by mx.zohomail.com with SMTPS id 1730460294351830.3151519139299; Fri, 1 Nov 2024 04:24:54 -0700 (PDT) From: Ricardo Wurmus To: 72727-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-spacexr. Date: Fri, 01 Nov 2024 12:24:51 +0100 Message-ID: <875xp7kxh8.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 72727-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied, thanks! -- Ricardo From unknown Fri Aug 15 04:07:38 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Fri, 29 Nov 2024 12:24:14 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator