From unknown Sat Aug 16 17:00:44 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#72726] [PATCH] gnu: Add r-caliberrfimpute. Resent-From: "Afkhami, Navid" Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 20 Aug 2024 07:51:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 72726 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 72726@debbugs.gnu.org Cc: "Afkhami, Navid" X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.17241402084552 (code B ref -1); Tue, 20 Aug 2024 07:51:01 +0000 Received: (at submit) by debbugs.gnu.org; 20 Aug 2024 07:50:08 +0000 Received: from localhost ([127.0.0.1]:59753 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sgJd2-0001BL-C4 for submit@debbugs.gnu.org; Tue, 20 Aug 2024 03:50:08 -0400 Received: from lists.gnu.org ([209.51.188.17]:58382) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sgJcz-0001B9-Sx for submit@debbugs.gnu.org; Tue, 20 Aug 2024 03:50:06 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sgJcI-0007Iz-QI for guix-patches@gnu.org; Tue, 20 Aug 2024 03:49:22 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sgJcG-0006CT-Dj for guix-patches@gnu.org; Tue, 20 Aug 2024 03:49:22 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1724140155; x=1725954556; bh=uGN+l5eIPYHtrAM b5ZHUmkKXSyuQHbVVgpuUC0EAmYk=; b=L6eM8T/a24DdxemypLWm7O1ukMVhuVS A9EzDZnLhuwmen2oV8IxZV6kUj/++Oh93ZU6b86qnoU3Otj5foG6AX1ys25Pw01c IznJhACkVvc+kxqQFykRw13qqsk798qky/MOqs2S0xWrk/H45JUFeEo28ITgDi56 AAWzBtgMIVwE= Received: from SW-IT-P-EX1.mdc-berlin.net (mgw1.mdc-berlin.de [141.80.113.54]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 93243A017D for ; Tue, 20 Aug 2024 09:49:15 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.11; Tue, 20 Aug 2024 09:49:14 +0200 From: "Afkhami, Navid" Date: Tue, 20 Aug 2024 07:46:46 +0000 Message-ID: X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28606.005 X-TM-AS-Result: No-10--6.671600-5.000000 X-TMASE-MatchedRID: SzbEz7SZt2sEZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhdqK Kei3fK/BEsVLAGPz1RR1B5MU0auAuYdGq5XlvEmXUrLQDoO1CVfumP3eaxnnYT4mDuxB3OdoLUD +qcOWoY8MkbHh8hhHAH3y4QLMAztck9ivTnwPC+ZZnFiE9hisyfVUZDyWvrKuD5teccobfJVbyC HfDNuoE87us0wV78flWjsaYI4lh3VVdLcIC34PGKVrvdty9P1eLUpJeJkuTUpT/y/BwsjXTYMYF wrgj3rRTPOBok8FI7e+68HqACCvKA== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.671600-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28606.005 X-TM-SNTS-SMTP: E53AB71E14739BC9B0394DE5D9A8A0D8E5E719033D8E9548D456DB7BEF7E6A8B2000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, RCVD_IN_MSPIKE_H2=-0.001, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/cran.scm (r-caliberrfimpute): New variable. Change-Id: I0f3d29e4620a4301644077f56e70c50d1f4c1438 --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a9298e90b7..fa649601f8 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4538,6 +4538,27 @@ (define-public r-reordercluster same time tries to group instances from the same class together.") (license license:gpl3+))) +(define-public r-caliberrfimpute + (package + (name "r-caliberrfimpute") + (version "1.0-7") + (source + (origin + (method url-fetch) + (uri (cran-uri "CALIBERrfimpute" version)) + (sha256 + (base32 "1fspn6wgr0kc7j4ixx24c706kzrgjhi1b1w28izpfxm4r89zk08s")))) + (properties `((upstream-name . "CALIBERrfimpute"))) + (build-system r-build-system) + (propagated-inputs (list r-mice r-mvtnorm r-randomforest)) + (home-page "https://cran.r-project.org/package=CALIBERrfimpute") + (synopsis "Multiple imputation using MICE and random forest") + (description + "This package provides functions to impute using random forest. +It operates under full conditional specifications (multivariate +imputation by chained equations).") + (license license:gpl3))) + (define-public r-callr (package (name "r-callr") base-commit: ce40b1c655edab622b4ad9ff49f948bd65753662 prerequisite-patch-id: dc2f4964edf0016b1e572e9f41129606c4fb3132 -- 2.34.1 From unknown Sat Aug 16 17:00:44 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: "Afkhami, Navid" Subject: bug#72726: closed ([PATCH] gnu: Add r-caliberrfimpute.) Message-ID: References: <87a5ejkxi9.fsf@elephly.net> X-Gnu-PR-Message: they-closed 72726 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 72726@debbugs.gnu.org Date: Fri, 01 Nov 2024 11:25:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1730460302-20054-1" This is a multi-part message in MIME format... ------------=_1730460302-20054-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #72726: [PATCH] gnu: Add r-caliberrfimpute. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 72726@debbugs.gnu.org. --=20 72726: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D72726 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1730460302-20054-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 72726-done) by debbugs.gnu.org; 1 Nov 2024 11:24:24 +0000 Received: from localhost ([127.0.0.1]:48731 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t6plQ-0005Cd-2O for submit@debbugs.gnu.org; Fri, 01 Nov 2024 07:24:24 -0400 Received: from sender3-of-o58.zoho.com ([136.143.184.58]:21885) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t6plO-0005CX-DD for 72726-done@debbugs.gnu.org; Fri, 01 Nov 2024 07:24:23 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1730460260; cv=none; d=zohomail.com; s=zohoarc; b=ZDHQtrTQ6XnJt7tH59Z1K8YSOvBAsIexBQtIJYMqvJlT81A/IOzoMmVDTk3piUll/0RAH2MdBlziWPbfk+kjk/5yHcoQc6l6yKJkQd0TP4c1l5/L//CMHDV92lyA88dYuLn8X/AM7qhiro0RSThIhAXL+Ba3PIFcuAtcsJ6XZuc= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1730460260; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=Bi6G7qEhFsGHSygvb4Ghw3+P042Gn+TTT4c5E3TAR92H7FM2AQ8cQwDOhBxfm1OFieVqqrUzmgGJYcc8cBCutra3okbzKZZGMaGdnueKblih3MIzpbunkQZaMoA5+foFVnUBgKbmW0lICZeRzCYUzOzbjQA8V/NsR8G2P3VQgJQ= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1730460260; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=QfUvy2BsDapE/+d9qocpauiK2UU9aqQe8U0ZT/3FEOcX1WXWaZUEtpjbOX5/Ht6L /njA3TWTm1QUU0vsRLnedsaX7lmxN1iMmaTFNvEsmj74K++zwRwE3hnWYpH2SjpWkVG EKDndORwankmAn1C9nmTvwVIudH1LbhjgGlANH+8= Received: by mx.zohomail.com with SMTPS id 1730460257757217.11183682699618; Fri, 1 Nov 2024 04:24:17 -0700 (PDT) From: Ricardo Wurmus To: 72726-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-caliberrfimpute. Date: Fri, 01 Nov 2024 12:24:14 +0100 Message-ID: <87a5ejkxi9.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 72726-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied, thanks! -- Ricardo ------------=_1730460302-20054-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 20 Aug 2024 07:50:08 +0000 Received: from localhost ([127.0.0.1]:59753 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sgJd2-0001BL-C4 for submit@debbugs.gnu.org; Tue, 20 Aug 2024 03:50:08 -0400 Received: from lists.gnu.org ([209.51.188.17]:58382) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sgJcz-0001B9-Sx for submit@debbugs.gnu.org; Tue, 20 Aug 2024 03:50:06 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sgJcI-0007Iz-QI for guix-patches@gnu.org; Tue, 20 Aug 2024 03:49:22 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sgJcG-0006CT-Dj for guix-patches@gnu.org; Tue, 20 Aug 2024 03:49:22 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1724140155; x=1725954556; bh=uGN+l5eIPYHtrAM b5ZHUmkKXSyuQHbVVgpuUC0EAmYk=; b=L6eM8T/a24DdxemypLWm7O1ukMVhuVS A9EzDZnLhuwmen2oV8IxZV6kUj/++Oh93ZU6b86qnoU3Otj5foG6AX1ys25Pw01c IznJhACkVvc+kxqQFykRw13qqsk798qky/MOqs2S0xWrk/H45JUFeEo28ITgDi56 AAWzBtgMIVwE= Received: from SW-IT-P-EX1.mdc-berlin.net (mgw1.mdc-berlin.de [141.80.113.54]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 93243A017D for ; Tue, 20 Aug 2024 09:49:15 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.11; Tue, 20 Aug 2024 09:49:14 +0200 From: "Afkhami, Navid" To: Subject: [PATCH] gnu: Add r-caliberrfimpute. Date: Tue, 20 Aug 2024 07:46:46 +0000 Message-ID: X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28606.005 X-TM-AS-Result: No-10--6.671600-5.000000 X-TMASE-MatchedRID: SzbEz7SZt2sEZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhdqK Kei3fK/BEsVLAGPz1RR1B5MU0auAuYdGq5XlvEmXUrLQDoO1CVfumP3eaxnnYT4mDuxB3OdoLUD +qcOWoY8MkbHh8hhHAH3y4QLMAztck9ivTnwPC+ZZnFiE9hisyfVUZDyWvrKuD5teccobfJVbyC HfDNuoE87us0wV78flWjsaYI4lh3VVdLcIC34PGKVrvdty9P1eLUpJeJkuTUpT/y/BwsjXTYMYF wrgj3rRTPOBok8FI7e+68HqACCvKA== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.671600-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28606.005 X-TM-SNTS-SMTP: E53AB71E14739BC9B0394DE5D9A8A0D8E5E719033D8E9548D456DB7BEF7E6A8B2000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, RCVD_IN_MSPIKE_H2=-0.001, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit Cc: "Afkhami, Navid" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/cran.scm (r-caliberrfimpute): New variable. Change-Id: I0f3d29e4620a4301644077f56e70c50d1f4c1438 --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a9298e90b7..fa649601f8 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4538,6 +4538,27 @@ (define-public r-reordercluster same time tries to group instances from the same class together.") (license license:gpl3+))) +(define-public r-caliberrfimpute + (package + (name "r-caliberrfimpute") + (version "1.0-7") + (source + (origin + (method url-fetch) + (uri (cran-uri "CALIBERrfimpute" version)) + (sha256 + (base32 "1fspn6wgr0kc7j4ixx24c706kzrgjhi1b1w28izpfxm4r89zk08s")))) + (properties `((upstream-name . "CALIBERrfimpute"))) + (build-system r-build-system) + (propagated-inputs (list r-mice r-mvtnorm r-randomforest)) + (home-page "https://cran.r-project.org/package=CALIBERrfimpute") + (synopsis "Multiple imputation using MICE and random forest") + (description + "This package provides functions to impute using random forest. +It operates under full conditional specifications (multivariate +imputation by chained equations).") + (license license:gpl3))) + (define-public r-callr (package (name "r-callr") base-commit: ce40b1c655edab622b4ad9ff49f948bd65753662 prerequisite-patch-id: dc2f4964edf0016b1e572e9f41129606c4fb3132 -- 2.34.1 ------------=_1730460302-20054-1--