From unknown Fri Aug 15 03:38:46 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#71884 <71884@debbugs.gnu.org> To: bug#71884 <71884@debbugs.gnu.org> Subject: Status: [PATCH 0/3] python-dolfin-adjoint: Refresh package style. Reply-To: bug#71884 <71884@debbugs.gnu.org> Date: Fri, 15 Aug 2025 10:38:46 +0000 retitle 71884 [PATCH 0/3] python-dolfin-adjoint: Refresh package style. reassign 71884 guix-patches submitter 71884 Sharlatan Hellseher severity 71884 normal tag 71884 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Mon Jul 01 16:44:54 2024 Received: (at submit) by debbugs.gnu.org; 1 Jul 2024 20:44:54 +0000 Received: from localhost ([127.0.0.1]:34796 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sONtN-0002Fa-N4 for submit@debbugs.gnu.org; Mon, 01 Jul 2024 16:44:54 -0400 Received: from lists.gnu.org ([209.51.188.17]:45746) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sONtL-0002FP-D2 for submit@debbugs.gnu.org; Mon, 01 Jul 2024 16:44:51 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sONtJ-0004ZW-WB for guix-patches@gnu.org; Mon, 01 Jul 2024 16:44:50 -0400 Received: from mail-wm1-x335.google.com ([2a00:1450:4864:20::335]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1sONtI-00068B-71 for guix-patches@gnu.org; Mon, 01 Jul 2024 16:44:49 -0400 Received: by mail-wm1-x335.google.com with SMTP id 5b1f17b1804b1-4257d5fc9b7so14856605e9.2 for ; Mon, 01 Jul 2024 13:44:47 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1719866685; x=1720471485; darn=gnu.org; h=content-transfer-encoding:mime-version:message-id:date:subject:cc :to:from:from:to:cc:subject:date:message-id:reply-to; bh=QP5G5ae429cXCx3/iFNLYw+ADnO0iIKftGZyr/BJjgI=; b=mC88omLMtagZ8++BNpGAC10xwOzgMECA0mRv9OQiq86HmX0LeiGVVOxWuynZUBtVot w3XSGm0tg5zLRnN5EwkAS40lEjsDNBW5ZJMFyFfrwXdssAJYVzBWHEJvS+RTkuQkiNV7 1rcuS6cLVGzBpGefXYFFVAIquv7r/auQTiG4fCCJoa3C8cOFblGV9vWSx4Ll0G+42Od7 I9fCQPW47debywoHpGcY+LxamromryOvyE8uB1ek/KxCZRFvFgZvKasOI96tngMhitnN 8AEKX/0UXgKthQ8zZHBss6nvru4ZXnKbeWL6IO9tp+EmXWS/JEhS9XMVQoOcx5jVqIUf /Buw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1719866685; x=1720471485; h=content-transfer-encoding:mime-version:message-id:date:subject:cc :to:from:x-gm-message-state:from:to:cc:subject:date:message-id :reply-to; bh=QP5G5ae429cXCx3/iFNLYw+ADnO0iIKftGZyr/BJjgI=; b=b5I/5VyoFledJQvzp6gvXJ0U56WjhmCYkQp7zpJYgnvmwmJk/UZuzPipWEVqNG98gi RL+hh3r/z1pGPHf0rU4hz/JiPy/tOSRy68LxAK/fCHmX5oSqPvPqSwD64kbReIuwZAsU +MyDURwqBQddlWFoowcDzlMAFmPzStKAS6lYUE0ahAmBKn87cjTNgoPdHUvuzHSQ6WC2 YID01s3IUXa3zjeuGcAdCOsFPxmYNReq2AeneBOcBxE/MoPUiD6jriWFmXUrN2XirESG tg6DzTMfwGhk+V6IYgFYFSNSNyEI38MICb8hg0VK81UDu6QzgU67Dif+MaQ5sNkkGJqe w0Vw== X-Gm-Message-State: AOJu0YzzlLpuObBxNwDJbdz0SiUm/Wec12MK0/cVyoO/aFDw/kZk3oAS W/jCtIi5cGQefsBs8OKPFlWUhrEdfBfODoQ35MsXVeqWRF7l3HNBOheq2GdI X-Google-Smtp-Source: AGHT+IH412gz0qKJKeeGgFZeLLBrl9MimU0Piz0oU4YvsngA3dqeuvRheXjc/nMKWZtrjSygLDdidQ== X-Received: by 2002:a05:6000:2c2:b0:366:ed80:d052 with SMTP id ffacd0b85a97d-36775724943mr5323954f8f.52.1719866685341; Mon, 01 Jul 2024 13:44:45 -0700 (PDT) Received: from guxtil.incerto.xyz (bagu-15-b2-v4wan-170076-cust245.vm21.cable.virginm.net. [77.98.0.246]) by smtp.gmail.com with ESMTPSA id 5b1f17b1804b1-4256af55e61sm166316235e9.20.2024.07.01.13.44.44 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 01 Jul 2024 13:44:44 -0700 (PDT) From: Sharlatan Hellseher To: guix-patches@gnu.org Subject: [PATCH 0/3] python-dolfin-adjoint: Refresh package style. Date: Mon, 1 Jul 2024 21:44:41 +0100 Message-ID: X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Received-SPF: pass client-ip=2a00:1450:4864:20::335; envelope-from=sharlatanus@gmail.com; helo=mail-wm1-x335.google.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit Cc: Sharlatan Hellseher X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) Hi Guix! While checking CI , I noticed that the package would need to be refreshed. I mistakenly thought it was failing to build, but it actually failed to complete the build due to a timeout with other dependencies, specifically fenics-dolfin. Sharlatan Hellseher (3): gnu: python-dolfin-adjoint: Fix indentation. gnu: python-dolfin-adjoint: Adjust package style. gnu: python-dolfin-adjoint: Swap to pyproject-build-system. gnu/packages/simulation.scm | 122 +++++++++++++++++------------------- 1 file changed, 58 insertions(+), 64 deletions(-) base-commit: 85012e64819b39fd6112038134548b415fd5daff -- 2.41.0 From debbugs-submit-bounces@debbugs.gnu.org Mon Jul 01 16:47:28 2024 Received: (at 71884) by debbugs.gnu.org; 1 Jul 2024 20:47:28 +0000 Received: from localhost ([127.0.0.1]:34821 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sONvs-0002MF-A1 for submit@debbugs.gnu.org; Mon, 01 Jul 2024 16:47:28 -0400 Received: from mail-lf1-f42.google.com ([209.85.167.42]:55803) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sONvq-0002M2-8t for 71884@debbugs.gnu.org; Mon, 01 Jul 2024 16:47:27 -0400 Received: by mail-lf1-f42.google.com with SMTP id 2adb3069b0e04-52cd628f21cso3543222e87.3 for <71884@debbugs.gnu.org>; Mon, 01 Jul 2024 13:47:25 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1719866784; x=1720471584; darn=debbugs.gnu.org; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=wbZp9ker9gOVKKStGPxSv9xsrGHCABiiWZXnf2RMR+o=; b=OfKe94jLom/QYlka52p7H7NOoya1axopvrKguFvRFj0j3V7RzFwXQ7lrBi3iKlV+ge BAx/Mt879tILxWSlSchmWoFi+UpIj5yeJtSgP/AOOyC6BF08+W4KJdM4dOU5FktodyZv hzwOU/fprCl++llxtiqZXb6MOgxB3ZrOgmGoLRylfexrlSaqY/CdelYUruXwqCvP4ePd 25jz7RDXFTm+wuvVhFVHjJItcEnEKI6OLtnMgEaxsOL5dhFOlkUMCXWzVTZ7VwXwTw2V bs0cHyUbyzR/T0Sx9M28g1k3ieW+g0EmtjGH61Nklf9XQ2K1jDrdlPbjb/Anq4ptbAj7 urPQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1719866784; x=1720471584; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=wbZp9ker9gOVKKStGPxSv9xsrGHCABiiWZXnf2RMR+o=; b=pvddqgv4rRr8G0xHfzwG+3RR9aKoF50Ev8mJfdsjj4/oCHLGBHuasv2DAImhJOo4Y6 jEOV8d3mGwuMBBwAuZ7owqWW3JKaX3i/wcGqwbTE8kbxq2+ZVUSBxGjAuXmpa4vKVXkX 01Ab0QxrmIenp5E16bdTQhzXyNlCdMsuYRpjShnBa2phZQ09jS3mYcqUU4AeQbNN1/DS iw8lzwLnY2CVaUd7uUd+pbHT564kqZuWcWOLDlhE3IgPDupJ70SAZhYAY3aBH5ZnJSEu YEeEyfl6ya8goYzwC7o2zf0jBTQBny7SAtV9AX7nzGMc9LHfU5s4wG/AR6H6uJGCyvs3 iWsg== X-Gm-Message-State: AOJu0YwC3IDQDNu70MGuERUysvMiYzpSwgcrDBrDqfC155pqsXKl3d/E OuDVKojFUohZnsqG8vgm3n0uxxdx4xyoClxIK08J8b6z8/7xWdV0am4fRRqy X-Google-Smtp-Source: AGHT+IF39e5lAug3qoQCMkCifPKTXYxIWHC1sw7xWL+DbMjiq7lIJD2O9+AqFqL87H8hHR4dUACmLg== X-Received: by 2002:a05:6512:3b81:b0:52c:dc25:d706 with SMTP id 2adb3069b0e04-52e8270172cmr4421290e87.52.1719866784359; Mon, 01 Jul 2024 13:46:24 -0700 (PDT) Received: from guxtil.incerto.xyz (bagu-15-b2-v4wan-170076-cust245.vm21.cable.virginm.net. [77.98.0.246]) by smtp.gmail.com with ESMTPSA id ffacd0b85a97d-3675a0e1688sm11076402f8f.60.2024.07.01.13.46.23 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 01 Jul 2024 13:46:23 -0700 (PDT) From: Sharlatan Hellseher To: 71884@debbugs.gnu.org Subject: [PATCH 1/3] gnu: python-dolfin-adjoint: Fix indentation. Date: Mon, 1 Jul 2024 21:46:19 +0100 Message-ID: <85179153ce289e6ad62faddb3022bc01b3c28afb.1719866387.git.sharlatanus@gmail.com> X-Mailer: git-send-email 2.41.0 In-Reply-To: References: MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.7 (/) X-Debbugs-Envelope-To: 71884 Cc: Sharlatan Hellseher X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.3 (/) * gnu/packages/simulation.scm (python-dolfin-adjoint): Fix indentation. Change-Id: I457639a98f1ae49d43042e557352d390afc9419d --- gnu/packages/simulation.scm | 48 ++++++++++++++++++------------------- 1 file changed, 24 insertions(+), 24 deletions(-) diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index 4fa2e93d81..ab86e1d792 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -1180,29 +1180,29 @@ (define-public python-dolfin-adjoint (name "python-dolfin-adjoint") (version "2019.1.0") (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/dolfin-adjoint/pyadjoint") - (commit version))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "0xhy76a5f33hz94wc9g2mc5qmwkxfccbbc6yxl7psm130afp8lhn")) - (modules '((guix build utils))) - (snippet - '(begin - ;; One of the migration tests attempts to call openmpi - ;; recursively and fails. See - ;; https://bitbucket.org/mpi4py/mpi4py/issues/95. Run the - ;; test sequentially instead. - (with-directory-excursion "tests/migration/optimal_control_mms" - (substitute* "test_optimal_control_mms.py" - (("\\\"mpirun\\\", \\\"-n\\\", \\\"2\\\", ") ""))) - ;; Result files are regenerated in the check phase. - (delete-file-recursively - "tests/migration/viscoelasticity/test-results") - #t)))) + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/dolfin-adjoint/pyadjoint") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0xhy76a5f33hz94wc9g2mc5qmwkxfccbbc6yxl7psm130afp8lhn")) + (modules '((guix build utils))) + (snippet + '(begin + ;; One of the migration tests attempts to call openmpi + ;; recursively and fails. See + ;; https://bitbucket.org/mpi4py/mpi4py/issues/95. Run the + ;; test sequentially instead. + (with-directory-excursion "tests/migration/optimal_control_mms" + (substitute* "test_optimal_control_mms.py" + (("\\\"mpirun\\\", \\\"-n\\\", \\\"2\\\", ") ""))) + ;; Result files are regenerated in the check phase. + (delete-file-recursively + "tests/migration/viscoelasticity/test-results") + #t)))) (build-system python-build-system) (inputs (list fenics openmpi pybind11)) @@ -1219,7 +1219,7 @@ (define-public python-dolfin-adjoint `(#:phases (modify-phases %standard-phases (add-after 'build 'mpi-setup - ,%openmpi-setup) + ,%openmpi-setup) (add-after 'install 'install-doc (lambda* (#:key outputs #:allow-other-keys) (let* ((doc (string-append (assoc-ref outputs "out") -- 2.41.0 From debbugs-submit-bounces@debbugs.gnu.org Mon Jul 01 16:47:35 2024 Received: (at 71884) by debbugs.gnu.org; 1 Jul 2024 20:47:35 +0000 Received: from localhost ([127.0.0.1]:34825 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sONvy-0002Mc-NK for submit@debbugs.gnu.org; Mon, 01 Jul 2024 16:47:35 -0400 Received: from mail-wm1-f42.google.com ([209.85.128.42]:44377) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sONvw-0002M7-Ey for 71884@debbugs.gnu.org; Mon, 01 Jul 2024 16:47:33 -0400 Received: by mail-wm1-f42.google.com with SMTP id 5b1f17b1804b1-42562e4b5d1so24819865e9.1 for <71884@debbugs.gnu.org>; Mon, 01 Jul 2024 13:47:31 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1719866786; x=1720471586; darn=debbugs.gnu.org; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=0p7dLEltXMtXa4m3Od3cTzEoC7WIJB4LVmQQHY5FP7I=; b=Vf5mgbvYinGEz0YRGXnEkkpei/5zv1g91REJm8MC52V9mwRIHB92yy8HYdP572CG1u vIwpDgjADKPzoBw6faKs6O0cYiugJga5xGWcUUosOPwxh4fTSo+7DRhL5GFHSnInr5fE KxpPKshbuPT8Td9TTPlrDHxuEDqtWdyNIjcRtjP0ITDtap9ux9Boj37LqFcIFFPzIaG/ a1EMekRuTJjL7xp6MU2GJiX2XqNzGDqcsZvG3wbbak48VnPfqk/ikw+xZlGU16VIUpie maBUD01H0LJl/yl0xFbzFK1G4mu/C0e0c54iHfPANIAPpoq/uHAqgQI4YXwHD//hWSCV etZg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1719866786; x=1720471586; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=0p7dLEltXMtXa4m3Od3cTzEoC7WIJB4LVmQQHY5FP7I=; b=WHw94WNtCHorN92mSVeTrxxjolWPtP/+1rpDPww0gZMZL3pTlMmg0eN50xwFfV6Gsf h9H3+XoOWrF5Xr1BteDZ7TDyv2p+Qyojz4B05GAEHqoV8noWVPk5bjl5z27Cj1ktEyXW o+ZBFhT5AMOsBr/2W7b+ECVS5WYU28wA5KabN/oD7/WB1/balHMHm5JbUoLUkVIif4c4 VhhCRtgWfG/AKqfuunnh3Zpn987kkusn0qLFa3BavDfvaE+DYE8+aX/pq9MvLoGXXJF1 BRhqnHW7a+kKJc2V4rEdkr+csnDVxMyvcm+WiXBFKjcjAYyz89apYsHMbpDAO0e4Iqk3 D91w== X-Gm-Message-State: AOJu0YxjXyrHKS3VSnfLKmLnjnRbGVBCMj/01K14yrnk6D72ijZgHTya QVTexcrpDm+x/c1Td1/aaLrXg8OXtZVpQ+Runy5nQojRkIGiG0gf236VkL47 X-Google-Smtp-Source: AGHT+IFXkC6PUKsLQHjsWIjoD5/b7WW2b7slcRoShhCecD7ydwdQ7m237sB7Wuiw9FtSb9OSG1MA+g== X-Received: by 2002:a05:600c:ac6:b0:425:28a7:a147 with SMTP id 5b1f17b1804b1-4257a011a58mr45628045e9.22.1719866785988; Mon, 01 Jul 2024 13:46:25 -0700 (PDT) Received: from guxtil.incerto.xyz (bagu-15-b2-v4wan-170076-cust245.vm21.cable.virginm.net. [77.98.0.246]) by smtp.gmail.com with ESMTPSA id ffacd0b85a97d-3675a0e1688sm11076402f8f.60.2024.07.01.13.46.25 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 01 Jul 2024 13:46:25 -0700 (PDT) From: Sharlatan Hellseher To: 71884@debbugs.gnu.org Subject: [PATCH 3/3] gnu: python-dolfin-adjoint: Swap to pyproject-build-system. Date: Mon, 1 Jul 2024 21:46:21 +0100 Message-ID: X-Mailer: git-send-email 2.41.0 In-Reply-To: References: MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 71884 Cc: Sharlatan Hellseher X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/simulation.scm (python-dolfin-adjoint) [source]: Remove trailing #t from snippet. [build-system]: Swap to pyproject-build-system. [arguments]: Apply G-expressions. <#:phases>: Swap back to defaul 'check phase. python-dolfin-adjoint Change-Id: Idf100b718b44d9d6695e598c434fbbac55a38845 --- gnu/packages/simulation.scm | 58 +++++++++++++++++-------------------- 1 file changed, 26 insertions(+), 32 deletions(-) diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index 5341c0ae55..182e00cec4 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -1201,39 +1201,33 @@ (define-public python-dolfin-adjoint (("\\\"mpirun\\\", \\\"-n\\\", \\\"2\\\", ") ""))) ;; Result files are regenerated in the check phase. (delete-file-recursively - "tests/migration/viscoelasticity/test-results") - #t)))) - (build-system python-build-system) + "tests/migration/viscoelasticity/test-results"))))) + (build-system pyproject-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'build 'mpi-setup - ,%openmpi-setup) - (add-after 'install 'install-doc - (lambda* (#:key outputs #:allow-other-keys) - (let* ((doc (string-append (assoc-ref outputs "out") - "/share/doc/" ,name "-" - ,version)) - (examples (string-append doc "/examples"))) - (mkdir-p examples) - (copy-recursively "examples" examples)) - #t)) - (replace 'check - (lambda* (#:key inputs outputs tests? #:allow-other-keys) - (when tests? - (add-installed-pythonpath inputs outputs) - (setenv "HOME" (getcwd)) - (and (invoke "py.test" "-v" "tests/fenics_adjoint" - "-k" "not test_read_checkpoint") - (invoke "py.test" "-v" "tests/migration") - (invoke "py.test" "-v" "tests/pyadjoint"))) - #t)) - ;; Remove 'sanity-check, because it tries to import - ;; firedrake_adjoint after importing fenics_adjoint. - ;; Both load a module named 'backend' and firedrake_adjoint - ;; fails with an ImportError if it sees that the backend module - ;; has already been loaded. - (delete 'sanity-check)))) + (list + #:test-flags + #~(list "tests/firedrake_adjoint/" + "tests/migration" + "tests/pyadjoint/" + "-k" "not test_read_checkpoint") + #:phases + #~(modify-phases %standard-phases + (add-after 'build 'mpi-setup ,%openmpi-setup) + (add-before 'check 'set-environment-variables + (lambda _ + (setenv "HOME" "/tmp"))) + (add-after 'install 'install-doc + (lambda _ + (let* ((doc (string-append #$output "/share/doc/" name "-" version)) + (examples (string-append doc "/examples"))) + (mkdir-p examples) + (copy-recursively "examples" examples)))) + ;; Remove 'sanity-check, because it tries to import + ;; firedrake_adjoint after importing fenics_adjoint. + ;; Both load a module named 'backend' and firedrake_adjoint + ;; fails with an ImportError if it sees that the backend module + ;; has already been loaded. + (delete 'sanity-check)))) (inputs (list fenics openmpi pybind11)) (native-inputs -- 2.41.0 From debbugs-submit-bounces@debbugs.gnu.org Mon Jul 01 16:47:35 2024 Received: (at 71884) by debbugs.gnu.org; 1 Jul 2024 20:47:35 +0000 Received: from localhost ([127.0.0.1]:34827 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sONvz-0002Mi-9L for submit@debbugs.gnu.org; Mon, 01 Jul 2024 16:47:35 -0400 Received: from mail-wm1-f52.google.com ([209.85.128.52]:44386) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sONvw-0002M6-5M for 71884@debbugs.gnu.org; Mon, 01 Jul 2024 16:47:33 -0400 Received: by mail-wm1-f52.google.com with SMTP id 5b1f17b1804b1-42562e4b5d1so24819785e9.1 for <71884@debbugs.gnu.org>; Mon, 01 Jul 2024 13:47:31 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1719866785; x=1720471585; darn=debbugs.gnu.org; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=y6TfW/zf00qsCqTPc0dTxMkv3A8/9xrMIshjUx+/LPw=; b=ipVUxAV3b9YhE/jqxbW4LBIp4Cky56J2W26d+CSDx+ylZDa+XHyI4FtSc0TKKSzlWh OSY7BNVIAHloCU/CtWdy0ohFf0IeIdmYhpoMLqv/t/0pY1XZnl4cvBkSvv7UTbtGd1ru Vs4escWLgiRARXwRM+56ZcxeK+B0xVH0bZtKTRvw5G2pkqedS6Lv6CSer7z7l6c7VzjA G3AHl+LCSeYhGJreadJmDWJGlYG3caobSRg+RaS0nEWGNPjK94v5qGFTl/QXgtTZEhy5 3YA1zmIpiPORROgsmGet2VnwaR9qN7ZTGIL0aQnyP+1qt4ER8ewLxRbw1VIprW6KBMTG +XfA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1719866785; x=1720471585; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=y6TfW/zf00qsCqTPc0dTxMkv3A8/9xrMIshjUx+/LPw=; b=GOUh6jDtPfl8gxf0jBw891zYNlSf+loMx8/Ed0Ej9y/mFLqg5aQfKiehNJrE5ZcG/w jYcOxzViyseKxSoaeg6dlo2Sgx0Bo0eV7lGk8VBQ/w4w98a3Sj01e9esvI3/B94EpS6F guR7ARZfSUQqvo6ZhOl/GG0jF0wl23g7fzzUCo046bPUs5MZdGiuSh6ei2HPkBfK6H+q HistTZSpNbXqzi+kAX9YLTyv8OjQgLNVpzD1eESiP6KOWBSSzs1aOPndghS34d6eefbO 7ceiVDYHKQ3cqnM1qilvDld8LDI+8bt8BgC0mGoOSfENIwTQKuiEttM9l6sFzVcKOGYV j7oA== X-Gm-Message-State: AOJu0YzGZrR7g3OUPZrjELFkrE8q5r+p3/nz09yHWocScqBf9pN1VmKw p5gZi9+PCj8rCZrjzJdBgIdDIHBcl2KKQiUjLXHK0fecNgQ9mNJeQgZ2KLtx X-Google-Smtp-Source: AGHT+IGC/b0DaZGFCgXAH6sOtDSzgRW+LnkgEeFym/k+5CvSwLe6gjUeqktMfQY9JzldpDfxUF8E0Q== X-Received: by 2002:a05:600c:6d4:b0:425:5f97:ecb8 with SMTP id 5b1f17b1804b1-4257a00dcd3mr50837555e9.15.1719866785311; Mon, 01 Jul 2024 13:46:25 -0700 (PDT) Received: from guxtil.incerto.xyz (bagu-15-b2-v4wan-170076-cust245.vm21.cable.virginm.net. [77.98.0.246]) by smtp.gmail.com with ESMTPSA id ffacd0b85a97d-3675a0e1688sm11076402f8f.60.2024.07.01.13.46.24 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 01 Jul 2024 13:46:24 -0700 (PDT) From: Sharlatan Hellseher To: 71884@debbugs.gnu.org Subject: [PATCH 2/3] gnu: python-dolfin-adjoint: Adjust package style. Date: Mon, 1 Jul 2024 21:46:20 +0100 Message-ID: X-Mailer: git-send-email 2.41.0 In-Reply-To: References: MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 71884 Cc: Sharlatan Hellseher X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/simulation.scm (python-dolfin-adjoint): Move inputs after arguments. [description]: Place it on a new line, fix indentation. Change-Id: I3d971e48b4072258ed0b41af5c202e64af9de8f3 --- gnu/packages/simulation.scm | 40 ++++++++++++++++++------------------- 1 file changed, 20 insertions(+), 20 deletions(-) diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index ab86e1d792..5341c0ae55 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -1204,17 +1204,6 @@ (define-public python-dolfin-adjoint "tests/migration/viscoelasticity/test-results") #t)))) (build-system python-build-system) - (inputs - (list fenics openmpi pybind11)) - (native-inputs - (list pkg-config - python-coverage - python-decorator - python-flake8 - python-pkgconfig - python-pytest)) - (propagated-inputs - `(("scipy" ,python-scipy))) (arguments `(#:phases (modify-phases %standard-phases @@ -1245,17 +1234,28 @@ (define-public python-dolfin-adjoint ;; fails with an ImportError if it sees that the backend module ;; has already been loaded. (delete 'sanity-check)))) + (inputs + (list fenics openmpi pybind11)) + (native-inputs + (list pkg-config + python-coverage + python-decorator + python-flake8 + python-pkgconfig + python-pytest)) + (propagated-inputs + (list python-scipy)) (home-page "https://www.dolfin-adjoint.org") (synopsis "Automatic differentiation library") - (description "@code{python-dolfin-adjoint} is a solver of -differential equations associated with a governing system and a -functional of interest. Working from the forward model the solver -automatically derives the discrete adjoint and tangent linear models. -These additional models are key ingredients in many algorithms such as -data assimilation, optimal control, sensitivity analysis, design -optimisation and error estimation. The dolfin-adjoint project -provides the necessary tools and data structures for cases where the -forward model is implemented in @code{fenics} or + (description + "@code{python-dolfin-adjoint} is a solver of differential equations +associated with a governing system and a functional of interest. Working from +the forward model the solver automatically derives the discrete adjoint and +tangent linear models. These additional models are key ingredients in many +algorithms such as data assimilation, optimal control, sensitivity analysis, +design optimisation and error estimation. The dolfin-adjoint project provides +the necessary tools and data structures for cases where the forward model is +implemented in @code{fenics} or @url{https://firedrakeproject.org,firedrake}.") (license license:lgpl3))) -- 2.41.0 From debbugs-submit-bounces@debbugs.gnu.org Wed Jul 10 00:12:06 2024 Received: (at 71884) by debbugs.gnu.org; 10 Jul 2024 04:12:06 +0000 Received: from localhost ([127.0.0.1]:54644 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sROgX-0002hC-QF for submit@debbugs.gnu.org; Wed, 10 Jul 2024 00:12:06 -0400 Received: from mx2.dismail.de ([159.69.191.136]:2034) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sROgV-0002gS-Ez for 71884@debbugs.gnu.org; Wed, 10 Jul 2024 00:12:04 -0400 Received: from mx2.dismail.de (localhost [127.0.0.1]) by mx2.dismail.de (OpenSMTPD) with ESMTP id dd376569; Wed, 10 Jul 2024 06:11:50 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed; d=dismail.de; h=from:to:cc :subject:in-reply-to:date:message-id:mime-version:content-type; s=20190914; bh=kw/qENe++DxSDDib47J2u59gWEv/to/f3TtELnkwARc=; b= eq69Rt6Px4i79Bgq4lKXbi6sZCTtLqAVF8TwzYdeWDXt5a3EYs2JGLs4nHAOXhWd 0+enSBIwJmUNefSzHcNebjkt0ij2/OKmwbrLcJPRsKT1PEzXMpObviFMUCrN2k3J mz1e76qUSKFxV8YIPv6/3GPyjBR1V+6AbARIIdjoms3U+4mfVwgaeXNN3yluFpNX jqwN3zqbzNf3Sii2Da0wxYfyweA09IywkvbGxD+zu/U24v66cmpDwqHGAm14J4bH 35QKeyzH6et2cQr8CngzUuxPUBdW78AKSsyoS/T2BPL2h9ol0XPIPqTSpaSz9IKw sVPHTYn7hPBpZpJLdDQLWw== Received: from smtp2.dismail.de ( [10.240.26.12]) by mx2.dismail.de (OpenSMTPD) with ESMTP id f745c0af; Wed, 10 Jul 2024 06:11:50 +0200 (CEST) Received: from smtp2.dismail.de (localhost [127.0.0.1]) by smtp2.dismail.de (OpenSMTPD) with ESMTP id ef1d6794; Wed, 10 Jul 2024 06:11:49 +0200 (CEST) Received: by dismail.de (OpenSMTPD) with ESMTPSA id 5cdcb8e6 (TLSv1.3:TLS_AES_256_GCM_SHA384:256:NO); Wed, 10 Jul 2024 06:11:49 +0200 (CEST) From: jgart To: 71884@debbugs.gnu.org Subject: Re: [PATCH 0/3] python-dolfin-adjoint: Refresh package style. In-Reply-To: Date: Tue, 09 Jul 2024 23:11:46 -0500 Message-ID: <87wmltlwcd.fsf@dismail.de> MIME-Version: 1.0 Content-Type: text/plain X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 71884 Cc: Sharlatan Hellseher X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) Hi, this fails with the following: ice-9/psyntax.scm:2824:12: In procedure syntax-violation: Syntax error: /gnu/store/aswasipy8cny2y8smvvihhrspy22j5gg-python-dolfin-adjoint-2019.1.0-builder:1:21039: unquote: expression not valid outside of quasiquote in form (unquote %openmpi-setup) builder for `/gnu/store/i3x10rwqjbnli7a7fy5xa0kfdsz653pp-python-dolfin-adjoint-2019.1.0.drv' failed with exit code 1 build of /gnu/store/i3x10rwqjbnli7a7fy5xa0kfdsz653pp-python-dolfin-adjoint-2019.1.0.drv failed -- all the best, jgart From debbugs-submit-bounces@debbugs.gnu.org Wed Jul 10 19:23:03 2024 Received: (at 71884) by debbugs.gnu.org; 10 Jul 2024 23:23:03 +0000 Received: from localhost ([127.0.0.1]:50523 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sRgeN-0005KC-87 for submit@debbugs.gnu.org; Wed, 10 Jul 2024 19:23:03 -0400 Received: from mail-lf1-f48.google.com ([209.85.167.48]:58421) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sRgeL-0005Ja-S4 for 71884@debbugs.gnu.org; Wed, 10 Jul 2024 19:23:02 -0400 Received: by mail-lf1-f48.google.com with SMTP id 2adb3069b0e04-52ea2ce7abaso568015e87.0 for <71884@debbugs.gnu.org>; Wed, 10 Jul 2024 16:23:02 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1720653721; x=1721258521; darn=debbugs.gnu.org; h=content-transfer-encoding:mime-version:message-id:date:subject:cc :to:from:from:to:cc:subject:date:message-id:reply-to; bh=jDRXCZZH1HfQbk72unobznL86O1/16kpB2ct4P3BNoQ=; b=aHxVCjoEPHWKT2IzOvVy4Fw6azIQI486KwcUSg8uLB0nFbJVkQD4pBjsYfLlPVyhH5 vJmVfZJNF8qRZN0Y1ytn/6hvuOLmgRxR462dLLri6U7XPfBr8ib+vC9hfmqyoE7Djc9b yUWLH9bXnRPbHCtjsKARvqJRge0cFpUzuBpeg4oHyHBkZ/SmTv1TKprP5QSOg/5xHz1A q3xo5Ixm4hBYeHcVxLpFah3xIPy8hqjX2ijAa9FgHO6GVchUItALRRYY36UzBIrO3vVa lktEd98Dbi2Zuo4yLgiL5Pxq5w0rfExuZMAGr6Hk/WYZ+KIdOyf7bgoJT0/ICONjt4j4 nRBA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1720653721; x=1721258521; h=content-transfer-encoding:mime-version:message-id:date:subject:cc :to:from:x-gm-message-state:from:to:cc:subject:date:message-id :reply-to; bh=jDRXCZZH1HfQbk72unobznL86O1/16kpB2ct4P3BNoQ=; b=LU/VH7z/66QYM6eWM39wQhd5OB8msOpn/gWimVkjIcA9Wis6YAqB9bjth/hv8WdFhP O8A8oa0sMEjyZscM72cCwYzGrxitqr+tZHFl6e23zOLS2mCkBMrUWnf/qbL26ipen0fK FnHJtDNuVNzW4d+C+OtgJ5ZD26rl+faJBtz6a4DU3AFyCk3zV6wlHSrcQt5YWe6RnV2p HF/ls2nY3bYutxXnr7K1005RgkOncG5lDzfMyDDggTwHl+FnxN4ffkvwdRj2hwU5Kbyh tpUEBsQFLdMualXe+IX3ywPUT0FKU9hiB2LW4ZUIkVUSFA4XVUROXr9kXkMbSxBOUr6u BkZA== X-Gm-Message-State: AOJu0Yx0SS+Dtl4OHcRAigrV5a7Pf7emBxSwtZAbpYYvIjNs8li/8kyf bk9+zoeJRO5xT+AUgE1iNXYdGPTrgvLfH+QdpQlL9te1vSdNiGyrC+d+eiYC X-Google-Smtp-Source: AGHT+IEWkSIiMhAGCmziri/zRX1T4+22tcZaJvVJWQU3ynbi5aNsYXJJF+f5mYEZblTGXsVGCDQxnQ== X-Received: by 2002:ac2:4575:0:b0:52c:a0b8:4dc0 with SMTP id 2adb3069b0e04-52eb999a6b0mr4489239e87.28.1720653721214; Wed, 10 Jul 2024 16:22:01 -0700 (PDT) Received: from guxtil.incerto.xyz (bagu-15-b2-v4wan-170076-cust245.vm21.cable.virginm.net. [77.98.0.246]) by smtp.gmail.com with ESMTPSA id 5b1f17b1804b1-4266f6f108dsm96856225e9.13.2024.07.10.16.22.00 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 10 Jul 2024 16:22:00 -0700 (PDT) From: Sharlatan Hellseher To: 71884@debbugs.gnu.org Subject: [PATCH v2 1/4] gnu: python-dolfin-adjoint: Fix indentation. Date: Thu, 11 Jul 2024 00:21:47 +0100 Message-ID: <6ebbf954f399ca8347144b087fae787c2b071354.1720653590.git.sharlatanus@gmail.com> X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 71884 Cc: Sharlatan Hellseher X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/simulation.scm (python-dolfin-adjoint): Fix indentation. Change-Id: I457639a98f1ae49d43042e557352d390afc9419d --- gnu/packages/simulation.scm | 48 ++++++++++++++++++------------------- 1 file changed, 24 insertions(+), 24 deletions(-) diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index 4fa2e93d81..ab86e1d792 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -1180,29 +1180,29 @@ (define-public python-dolfin-adjoint (name "python-dolfin-adjoint") (version "2019.1.0") (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/dolfin-adjoint/pyadjoint") - (commit version))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "0xhy76a5f33hz94wc9g2mc5qmwkxfccbbc6yxl7psm130afp8lhn")) - (modules '((guix build utils))) - (snippet - '(begin - ;; One of the migration tests attempts to call openmpi - ;; recursively and fails. See - ;; https://bitbucket.org/mpi4py/mpi4py/issues/95. Run the - ;; test sequentially instead. - (with-directory-excursion "tests/migration/optimal_control_mms" - (substitute* "test_optimal_control_mms.py" - (("\\\"mpirun\\\", \\\"-n\\\", \\\"2\\\", ") ""))) - ;; Result files are regenerated in the check phase. - (delete-file-recursively - "tests/migration/viscoelasticity/test-results") - #t)))) + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/dolfin-adjoint/pyadjoint") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0xhy76a5f33hz94wc9g2mc5qmwkxfccbbc6yxl7psm130afp8lhn")) + (modules '((guix build utils))) + (snippet + '(begin + ;; One of the migration tests attempts to call openmpi + ;; recursively and fails. See + ;; https://bitbucket.org/mpi4py/mpi4py/issues/95. Run the + ;; test sequentially instead. + (with-directory-excursion "tests/migration/optimal_control_mms" + (substitute* "test_optimal_control_mms.py" + (("\\\"mpirun\\\", \\\"-n\\\", \\\"2\\\", ") ""))) + ;; Result files are regenerated in the check phase. + (delete-file-recursively + "tests/migration/viscoelasticity/test-results") + #t)))) (build-system python-build-system) (inputs (list fenics openmpi pybind11)) @@ -1219,7 +1219,7 @@ (define-public python-dolfin-adjoint `(#:phases (modify-phases %standard-phases (add-after 'build 'mpi-setup - ,%openmpi-setup) + ,%openmpi-setup) (add-after 'install 'install-doc (lambda* (#:key outputs #:allow-other-keys) (let* ((doc (string-append (assoc-ref outputs "out") base-commit: a1f89695560dca1ecedab131a33bb6c5f4584226 -- 2.41.0 From debbugs-submit-bounces@debbugs.gnu.org Wed Jul 10 19:23:07 2024 Received: (at 71884) by debbugs.gnu.org; 10 Jul 2024 23:23:07 +0000 Received: from localhost ([127.0.0.1]:50526 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sRgeQ-0005KS-Ly for submit@debbugs.gnu.org; Wed, 10 Jul 2024 19:23:07 -0400 Received: from mail-lj1-f182.google.com ([209.85.208.182]:56497) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sRgeN-0005KE-Vh for 71884@debbugs.gnu.org; Wed, 10 Jul 2024 19:23:05 -0400 Received: by mail-lj1-f182.google.com with SMTP id 38308e7fff4ca-2ec61eeed8eso3136351fa.0 for <71884@debbugs.gnu.org>; Wed, 10 Jul 2024 16:23:04 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1720653724; x=1721258524; darn=debbugs.gnu.org; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=NS7iDZkpDQ56hhyI1FXvdcSsupnYNPNngtIR2Waw2yQ=; b=SC62u6lAbtYWbfOdamkgwGst4XrYEYPqtrNkCMZ/JkQUc3lMKhqfDCclWWo+9BSC1f CKJ0DeN6uUfVFlandHe7Vw8E68Ozu2HBiOSttTviTKxE7tHM++8x+oeMAWAmEUmhittN Co9IWhyvx557XI7fJ0iwhjC2/NZTJKGaTQzXqPbi18O+Vc3ZaICG8VpKGA2DV9tbgdtv UPHTLde1wL8i9+7GPxbbTBDru8azKgn/t3E5LzGvA+q6YzM37CF3MSPDLCDhK4BA3NR6 qHkuB69SfwWIxMySTEYNJViV2/mT+rb2Hq68Vr9MT/G6fxGMK7iV02847ROOrEXivtZV 6FKg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1720653724; x=1721258524; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=NS7iDZkpDQ56hhyI1FXvdcSsupnYNPNngtIR2Waw2yQ=; b=KnbZXOB1VAtd/5RMtwmeGNZrL+cFbZvgX6hhVGCnyXRirEPFq4u664gccobgIjt9Ed J+1bVYKXkduT/aPTZaJj0ylHG1pPbccmttyFld7GjFA1/OOH6L5AqoK42y+lRVuXTWaE nXfMVQ613Rs1vnOKjz0Ti8iVo6vDW/rB+42QLyjL3KNH2oBthbrT7sF+xRbdnGB08tb0 Qu25BhHBj3PHmXmy//KzJrA/M2+IgyhqTFDcA5W2aTjp2SBWR5BvlhPmqO9ErnAiFLT0 KFWstx7vYu5x2yzBOhHP1TwFo5vLe0CgsQYy+hq58HZE95XcGIhGwMoEyhw86vCRqQnY qvGg== X-Gm-Message-State: AOJu0YwNWpRuQNF6S4oMpTgUTBwIzl+Dti8dZ/XuCXTQzAmjvD38YmcL 7p72ClOOKWsGV6IVN5hH6ZJ3188rBRIiw0BoNAdaWknaBOCLsnPkAqqeRPHI X-Google-Smtp-Source: AGHT+IGBW0+PO7Gk005N+0nMzjxgaZ8qHn30QnQEQXwjKSRfU+nQv3JUSwrRp5gSM3NsuYEmoembFg== X-Received: by 2002:a2e:7d0e:0:b0:2ee:7e62:8886 with SMTP id 38308e7fff4ca-2eeb30bbf6dmr42428221fa.4.1720653723370; Wed, 10 Jul 2024 16:22:03 -0700 (PDT) Received: from guxtil.incerto.xyz (bagu-15-b2-v4wan-170076-cust245.vm21.cable.virginm.net. [77.98.0.246]) by smtp.gmail.com with ESMTPSA id 5b1f17b1804b1-4266f6f108dsm96856225e9.13.2024.07.10.16.22.02 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 10 Jul 2024 16:22:03 -0700 (PDT) From: Sharlatan Hellseher To: 71884@debbugs.gnu.org Subject: [PATCH v2 4/4] gnu: python-dolfin-adjoint:; Disable failing tests, fix build. Date: Thu, 11 Jul 2024 00:21:50 +0100 Message-ID: <1a53f626e1f543fc2ac7bb7dfd6e47bc60995ca3.1720653590.git.sharlatanus@gmail.com> X-Mailer: git-send-email 2.41.0 In-Reply-To: <6ebbf954f399ca8347144b087fae787c2b071354.1720653590.git.sharlatanus@gmail.com> References: <6ebbf954f399ca8347144b087fae787c2b071354.1720653590.git.sharlatanus@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 71884 Cc: Sharlatan Hellseher X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/simulation.scm (python-dolfin-adjoint) [arguments]: <#:test-flags>: Explicitly ignore failing tests during collection phase and some tests during runt test phase. <#:phases>: Change HOME env to GETCWD in 'set-environment-variable phase. Change-Id: Ibee5e45052a3828b4522752a87c97367d7caec65 --- gnu/packages/simulation.scm | 25 ++++++++++++++++++++----- 1 file changed, 20 insertions(+), 5 deletions(-) diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index ad9f0080cc..99bd107c94 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -1205,16 +1205,31 @@ (define-public python-dolfin-adjoint (arguments (list #:test-flags - #~(list "tests/fenics_adjoint" - "tests/migration" - "tests/pyadjoint" - "-k" "not test_read_checkpoint") + #~(list + ;; Ignore tests which require missing packages and/or failed during + ;; tests collection. + "--ignore=tests/firedrake_adjoint/test_assignment.py" + "--ignore=tests/firedrake_adjoint/test_burgers_newton.py" + "--ignore=tests/firedrake_adjoint/test_dynamic_meshes.py" + "--ignore=tests/firedrake_adjoint/test_hessian.py" + "--ignore=tests/firedrake_adjoint/test_reduced_functional.py" + "--ignore=tests/firedrake_adjoint/test_shape_derivatives.py" + "--ignore=tests/firedrake_adjoint/test_solving.py" + "--ignore=tests/firedrake_adjoint/test_tlm.py" + "--ignore=tests/migration/burgers_newton/test_burgers_newton.py" + "--ignore=tests/migration/linear_solver/test_linear_solver.py" + "--ignore=tests/migration/optimization_scipy/test_optimization_scipy.py" + "--ignore=tests/migration/projection/test_projection.py" + "--ignore=tests/migration/reduced_functional/test_reduced_functional.py" + "--ignore=tests/migration/split/test_split.py" + "-k" (string-append "not test_read_checkpoint" + " and not test_krylov_solver_preconditioner_function_ctrl")) #:phases #~(modify-phases %standard-phases (add-after 'build 'mpi-setup #$%openmpi-setup) (add-before 'check 'set-environment-variables (lambda _ - (setenv "HOME" "/tmp"))) + (setenv "HOME" (getcwd)))) (add-after 'install 'install-doc (lambda _ (let* ((doc (string-append #$output "/share/doc/" #$name "-" #$version)) -- 2.41.0 From debbugs-submit-bounces@debbugs.gnu.org Wed Jul 10 19:23:09 2024 Received: (at 71884) by debbugs.gnu.org; 10 Jul 2024 23:23:09 +0000 Received: from localhost ([127.0.0.1]:50530 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sRgeT-0005Km-3l for submit@debbugs.gnu.org; Wed, 10 Jul 2024 19:23:09 -0400 Received: from mail-wm1-f42.google.com ([209.85.128.42]:48371) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sRgeR-0005Je-AS for 71884@debbugs.gnu.org; Wed, 10 Jul 2024 19:23:08 -0400 Received: by mail-wm1-f42.google.com with SMTP id 5b1f17b1804b1-42793fc0a6dso1851055e9.0 for <71884@debbugs.gnu.org>; Wed, 10 Jul 2024 16:23:07 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1720653722; x=1721258522; darn=debbugs.gnu.org; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=y6TfW/zf00qsCqTPc0dTxMkv3A8/9xrMIshjUx+/LPw=; b=TQZR3fNxzKDx+4mpNeiJz8OslY3yhu1N0sXAcBgNT0K1wjvJf4FX6a+hBVN5OOg+oE 0+HuTEqJGTNGtM6On8Ht0bIKWEPIoe/WBEAq0OXJ2kVBZgxX3E8cyEBN1Y7P3RoN7E+4 KWVqkQ7Lin+aZP5CmusX6KasUHpQfM9HrEm869HbmzHJ2gWnGrKn/aGZlZio/N1Jvkdf iYcMyDbw2ImD8ESKZRpy+ziZf96gmeRmTAd/QTXFoZ38wE0N3ErhwAWaTzPDnnya1I/p qFMHwA1x4BP1Js3PpL2GxWx7CG32yujOYZXEVC2o/PEDiPMuTq7fzK+cOnHjw5GUFYs2 uxrA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1720653722; x=1721258522; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=y6TfW/zf00qsCqTPc0dTxMkv3A8/9xrMIshjUx+/LPw=; b=GJgD+YqL6uYldK3PgjGdYiCzWJBihTXuEnDhIUv7JYgAjvoivzHhwUOvPTHYS5QpyB 1YMa4KOQcM+50cyYYz05Yp/SLKe1mseI4eK44mGEXoRu6fEPLm3XK8ViwxdPux2DTC0J DTaoQqw0TfPth/2cvb0QRLDSeJiwUiMehEAoCridFsjCLd+89tJOnV+NCKKRPR+1bQUN 11NxsKpgHQMPiQh8mt3gAMxk0hcXmOtEqY5up6EbPaZqHBEN/UeI0oilW79nBMsA93Pu amO1YICGEhaP6SyvokMq2fHBOXISzp3kB+fpGAfe6dmRd/2bx3mlYdonBTF9pumRCDJ6 WiXg== X-Gm-Message-State: AOJu0YyXwCbPcALK/zelaWRhRGfx06J4Zot4P9u/0NhijRzhSg6Fl/F9 QWOe8yA+yBOhsEwtu+3BMTTvR/5HEiDlgJpAq7cXmG1/xV+oT109LBwbOOkG X-Google-Smtp-Source: AGHT+IFy04lbD2WOqyR9hdvmbgnq3GE92NhgoQJRDnbzHKDiO+rJJ8yuzOWRUGG852OjpfkSN1C2oQ== X-Received: by 2002:a5d:47a9:0:b0:366:e7e2:13c8 with SMTP id ffacd0b85a97d-367cea46a0bmr5955855f8f.11.1720653721941; Wed, 10 Jul 2024 16:22:01 -0700 (PDT) Received: from guxtil.incerto.xyz (bagu-15-b2-v4wan-170076-cust245.vm21.cable.virginm.net. [77.98.0.246]) by smtp.gmail.com with ESMTPSA id 5b1f17b1804b1-4266f6f108dsm96856225e9.13.2024.07.10.16.22.01 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 10 Jul 2024 16:22:01 -0700 (PDT) From: Sharlatan Hellseher To: 71884@debbugs.gnu.org Subject: [PATCH v2 2/4] gnu: python-dolfin-adjoint: Adjust package style. Date: Thu, 11 Jul 2024 00:21:48 +0100 Message-ID: <67fd2d1ce61e184b8fc4fdd21eb7eee3c375cc52.1720653590.git.sharlatanus@gmail.com> X-Mailer: git-send-email 2.41.0 In-Reply-To: <6ebbf954f399ca8347144b087fae787c2b071354.1720653590.git.sharlatanus@gmail.com> References: <6ebbf954f399ca8347144b087fae787c2b071354.1720653590.git.sharlatanus@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 71884 Cc: Sharlatan Hellseher X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/simulation.scm (python-dolfin-adjoint): Move inputs after arguments. [description]: Place it on a new line, fix indentation. Change-Id: I3d971e48b4072258ed0b41af5c202e64af9de8f3 --- gnu/packages/simulation.scm | 40 ++++++++++++++++++------------------- 1 file changed, 20 insertions(+), 20 deletions(-) diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index ab86e1d792..5341c0ae55 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -1204,17 +1204,6 @@ (define-public python-dolfin-adjoint "tests/migration/viscoelasticity/test-results") #t)))) (build-system python-build-system) - (inputs - (list fenics openmpi pybind11)) - (native-inputs - (list pkg-config - python-coverage - python-decorator - python-flake8 - python-pkgconfig - python-pytest)) - (propagated-inputs - `(("scipy" ,python-scipy))) (arguments `(#:phases (modify-phases %standard-phases @@ -1245,17 +1234,28 @@ (define-public python-dolfin-adjoint ;; fails with an ImportError if it sees that the backend module ;; has already been loaded. (delete 'sanity-check)))) + (inputs + (list fenics openmpi pybind11)) + (native-inputs + (list pkg-config + python-coverage + python-decorator + python-flake8 + python-pkgconfig + python-pytest)) + (propagated-inputs + (list python-scipy)) (home-page "https://www.dolfin-adjoint.org") (synopsis "Automatic differentiation library") - (description "@code{python-dolfin-adjoint} is a solver of -differential equations associated with a governing system and a -functional of interest. Working from the forward model the solver -automatically derives the discrete adjoint and tangent linear models. -These additional models are key ingredients in many algorithms such as -data assimilation, optimal control, sensitivity analysis, design -optimisation and error estimation. The dolfin-adjoint project -provides the necessary tools and data structures for cases where the -forward model is implemented in @code{fenics} or + (description + "@code{python-dolfin-adjoint} is a solver of differential equations +associated with a governing system and a functional of interest. Working from +the forward model the solver automatically derives the discrete adjoint and +tangent linear models. These additional models are key ingredients in many +algorithms such as data assimilation, optimal control, sensitivity analysis, +design optimisation and error estimation. The dolfin-adjoint project provides +the necessary tools and data structures for cases where the forward model is +implemented in @code{fenics} or @url{https://firedrakeproject.org,firedrake}.") (license license:lgpl3))) -- 2.41.0 From debbugs-submit-bounces@debbugs.gnu.org Wed Jul 10 19:23:10 2024 Received: (at 71884) by debbugs.gnu.org; 10 Jul 2024 23:23:10 +0000 Received: from localhost ([127.0.0.1]:50532 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sRgeT-0005Ks-K1 for submit@debbugs.gnu.org; Wed, 10 Jul 2024 19:23:09 -0400 Received: from mail-wm1-f49.google.com ([209.85.128.49]:42201) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sRgeS-0005K6-0E for 71884@debbugs.gnu.org; Wed, 10 Jul 2024 19:23:08 -0400 Received: by mail-wm1-f49.google.com with SMTP id 5b1f17b1804b1-426717a2d12so1762665e9.0 for <71884@debbugs.gnu.org>; Wed, 10 Jul 2024 16:23:08 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1720653723; x=1721258523; darn=debbugs.gnu.org; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=xqQmdE///f7gCwjI+XLOkhXBu7FXrOB0kET6CCzFYlo=; b=g2MygsCFU9vr/1E2O9tVcPYVI8Il6qGta2WvXU+JEUQl4+okOzSdd34gf6eAceWOiZ 9Bi6FBJH4kvMmb9fxByuuQjfC1CDoG7MqPkmEpdVcDA0sd9bKGXXxVNYu/zry/6FJi41 KKlqOswA1lLmHzWYRH0VjXy2aJ5LEoVv+8iYq24hnoonNW2s6UiRNYRq5CAFwhgK2nTy 1MQrAxsrKYtJ5dC3kDbm32tEk+JREWWR6NSCZlQweJhYcuXMwuFLeFxUaL3gkUuycXEm f/AiJcKkfIdn3WZoWyLgrucs8+Ia6QWvOwNo/MlnrDIWAOjO448kPelaUHlk144PibCo NIaQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1720653723; x=1721258523; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=xqQmdE///f7gCwjI+XLOkhXBu7FXrOB0kET6CCzFYlo=; b=VUNO4hF/YkchENyQDdI+BfpjaoqfdL8sAEJbxA5D4KcT8EiuzqIxdi83s2k7jQCWww XqiFZPOg4A3TZ83cdMCscYrRXwB3uPcregzrb3k6XNzUplQ89KFpGcRZYXmBfqqRHcBb vqvDMPozSAq0ujJcW3VX/XPukvGsSGRQlZcvIl4habtYlU0qobfWSPedIeVBQoZSpoPr YHEpyhfoHqQ+63CqCjFxDGXGDoTO7VDPYDQpC4ja4bra1wGvzaG2tK96IE32cXsGRc4T wmiEUQyNN/MzpYP8f9BxwCgMiIUxnd4wjKbkpUK9OEod/RJZkkNYDEPDoOAe1u0LVtYq 3X3Q== X-Gm-Message-State: AOJu0Yxzlzd+89TVBhtjbhqNjkSJbgm4UxeiW9vetUUwMFw/q9HnpNzy 7JHdAg45D9iFtg+kZv83/QbYJNEgAYi+xt2skxHX+rMMhhHsd2LimkuNYS6I X-Google-Smtp-Source: AGHT+IFRclHxgARlUEP9ptBZ99q4LCXSKE4oQ+YFUXs/btVYbYoA0iB+8CwDVTsczer+Gls9rO6wOg== X-Received: by 2002:a05:600c:2297:b0:426:706c:a55a with SMTP id 5b1f17b1804b1-427981b2265mr8080465e9.2.1720653722681; Wed, 10 Jul 2024 16:22:02 -0700 (PDT) Received: from guxtil.incerto.xyz (bagu-15-b2-v4wan-170076-cust245.vm21.cable.virginm.net. [77.98.0.246]) by smtp.gmail.com with ESMTPSA id 5b1f17b1804b1-4266f6f108dsm96856225e9.13.2024.07.10.16.22.02 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 10 Jul 2024 16:22:02 -0700 (PDT) From: Sharlatan Hellseher To: 71884@debbugs.gnu.org Subject: [PATCH v2 3/4] gnu: python-dolfin-adjoint: Swap to pyproject-build-system. Date: Thu, 11 Jul 2024 00:21:49 +0100 Message-ID: X-Mailer: git-send-email 2.41.0 In-Reply-To: <6ebbf954f399ca8347144b087fae787c2b071354.1720653590.git.sharlatanus@gmail.com> References: <6ebbf954f399ca8347144b087fae787c2b071354.1720653590.git.sharlatanus@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 71884 Cc: Sharlatan Hellseher X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/simulation.scm (python-dolfin-adjoint) [source]: Remove trailing #t from snippet. [build-system]: Swap to pyproject-build-system. [arguments]: Apply G-expressions. <#:phases>: Swap back to defaul 'check phase. python-dolfin-adjoint Change-Id: Idf100b718b44d9d6695e598c434fbbac55a38845 --- gnu/packages/simulation.scm | 61 ++++++++++++++++--------------------- 1 file changed, 27 insertions(+), 34 deletions(-) diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index 5341c0ae55..ad9f0080cc 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -1187,8 +1187,7 @@ (define-public python-dolfin-adjoint (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 - "0xhy76a5f33hz94wc9g2mc5qmwkxfccbbc6yxl7psm130afp8lhn")) + (base32 "0xhy76a5f33hz94wc9g2mc5qmwkxfccbbc6yxl7psm130afp8lhn")) (modules '((guix build utils))) (snippet '(begin @@ -1201,39 +1200,33 @@ (define-public python-dolfin-adjoint (("\\\"mpirun\\\", \\\"-n\\\", \\\"2\\\", ") ""))) ;; Result files are regenerated in the check phase. (delete-file-recursively - "tests/migration/viscoelasticity/test-results") - #t)))) - (build-system python-build-system) + "tests/migration/viscoelasticity/test-results"))))) + (build-system pyproject-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'build 'mpi-setup - ,%openmpi-setup) - (add-after 'install 'install-doc - (lambda* (#:key outputs #:allow-other-keys) - (let* ((doc (string-append (assoc-ref outputs "out") - "/share/doc/" ,name "-" - ,version)) - (examples (string-append doc "/examples"))) - (mkdir-p examples) - (copy-recursively "examples" examples)) - #t)) - (replace 'check - (lambda* (#:key inputs outputs tests? #:allow-other-keys) - (when tests? - (add-installed-pythonpath inputs outputs) - (setenv "HOME" (getcwd)) - (and (invoke "py.test" "-v" "tests/fenics_adjoint" - "-k" "not test_read_checkpoint") - (invoke "py.test" "-v" "tests/migration") - (invoke "py.test" "-v" "tests/pyadjoint"))) - #t)) - ;; Remove 'sanity-check, because it tries to import - ;; firedrake_adjoint after importing fenics_adjoint. - ;; Both load a module named 'backend' and firedrake_adjoint - ;; fails with an ImportError if it sees that the backend module - ;; has already been loaded. - (delete 'sanity-check)))) + (list + #:test-flags + #~(list "tests/fenics_adjoint" + "tests/migration" + "tests/pyadjoint" + "-k" "not test_read_checkpoint") + #:phases + #~(modify-phases %standard-phases + (add-after 'build 'mpi-setup #$%openmpi-setup) + (add-before 'check 'set-environment-variables + (lambda _ + (setenv "HOME" "/tmp"))) + (add-after 'install 'install-doc + (lambda _ + (let* ((doc (string-append #$output "/share/doc/" #$name "-" #$version)) + (examples (string-append doc "/examples"))) + (mkdir-p examples) + (copy-recursively "examples" examples)))) + ;; Remove 'sanity-check, because it tries to import + ;; firedrake_adjoint after importing fenics_adjoint. + ;; Both load a module named 'backend' and firedrake_adjoint + ;; fails with an ImportError if it sees that the backend module + ;; has already been loaded. + (delete 'sanity-check)))) (inputs (list fenics openmpi pybind11)) (native-inputs -- 2.41.0 From debbugs-submit-bounces@debbugs.gnu.org Thu Jul 11 14:18:44 2024 Received: (at 71884-done) by debbugs.gnu.org; 11 Jul 2024 18:18:44 +0000 Received: from localhost ([127.0.0.1]:52538 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sRyNQ-0007UT-1u for submit@debbugs.gnu.org; Thu, 11 Jul 2024 14:18:44 -0400 Received: from mail-wr1-f50.google.com ([209.85.221.50]:52379) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sRyNN-0007UE-5R for 71884-done@debbugs.gnu.org; Thu, 11 Jul 2024 14:18:42 -0400 Received: by mail-wr1-f50.google.com with SMTP id ffacd0b85a97d-36799a67d9cso799323f8f.0 for <71884-done@debbugs.gnu.org>; Thu, 11 Jul 2024 11:18:41 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1720721855; x=1721326655; darn=debbugs.gnu.org; h=mime-version:message-id:date:subject:to:from:from:to:cc:subject :date:message-id:reply-to; bh=Q4KoBTQoTRx3j3YtarO6w4NGxIw4n2z+1A1nMFXkPYw=; b=Epa94GSppfUoADD4hPGo0KwKVNTupmSVQuD9NZrGxbN6T4mfbPgqDgwoUWx6P1BT/x Ba5V3qKZBH0/VUxNw41x6Zii7Dyy3S+PJ997btzaAE1IUEK203MXg8W+SNe1t8EWABfn uR4t9rgPOidcvmpXsrx7mEtTDkZA/W8ma7CXHp1R1d70h8UljLp7kgdUfTrKJjwy+VVB R7xmsheKwEVsEpCirAiL3aWC8Q43R6GvYeMz9+7E4Jh09pNUeqzPmNc/zNJqU5eyOIaz FCZ9RF1jc/1rB+ZPuHGEKriXIdNW1mWRoziz71AxPmAoLWTcyidJULW5/xIJTGy1wNo4 QvZw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1720721855; x=1721326655; h=mime-version:message-id:date:subject:to:from:x-gm-message-state :from:to:cc:subject:date:message-id:reply-to; bh=Q4KoBTQoTRx3j3YtarO6w4NGxIw4n2z+1A1nMFXkPYw=; b=fSKR0Fty2xSrdkGfVLSVZe/lFcdFprGo0XSChdg4ITH5gcxvoPjhjvZPPVVwjr8FCI rRpPKolGLlrsctrKF6Id7mZaGwp/RgMGkq6LVJC6qFCH5Fh6SiT9wo4wIm1BMryMD0j/ W6Y0JvcK3Jy8s+vuy8Kn0ry3VU9bzAFLHM2iUYu79P1lW2zSZhNgdH3AIhwBL25/4FHf Q3o0VzOBLIvaa1Xv8ej2Lz/vluoNLHavL2x47f+rSYWoUWvFZ9CF2PKmgRbNCWJK96fV dOid9FQ/4dP+oIGw51tGdlOcyQmjn5V8w4Vg35/hdEc+IbgHoJm5VYD9p+zkllXEkEju GipA== X-Gm-Message-State: AOJu0YxAZECWd6y6eg+KoPCXsinYMCBbpyC3yO6A8rDCPAEExDOHK9Hn L2kHeLToRg4In82g84dBFFpCin37G8V0CSL6klOoSgSl9Yv+YZgEjZYZdXPz X-Google-Smtp-Source: AGHT+IGoOTqM4PK1cxkHfUDmM/9dkI6HhagZ5ZMtty1G3YT3FSnAFipWjzJx94XsUX3dWUStyYX7xA== X-Received: by 2002:a05:6000:1865:b0:367:95d4:b78 with SMTP id ffacd0b85a97d-367cea462f6mr10111913f8f.10.1720721855336; Thu, 11 Jul 2024 11:17:35 -0700 (PDT) Received: from guxtil (bagu-15-b2-v4wan-170076-cust245.vm21.cable.virginm.net. [77.98.0.246]) by smtp.gmail.com with ESMTPSA id ffacd0b85a97d-367cde89198sm8274680f8f.60.2024.07.11.11.17.34 for <71884-done@debbugs.gnu.org> (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Thu, 11 Jul 2024 11:17:34 -0700 (PDT) From: Sharlatan Hellseher To: 71884-done@debbugs.gnu.org Subject: [PATCH 0/3] python-dolfin-adjoint: Refresh package style. Date: Thu, 11 Jul 2024 19:17:33 +0100 Message-ID: <87ed7zpzcy.fsf@gmail.com> MIME-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha512; protocol="application/pgp-signature" X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 71884-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) --=-=-= Content-Type: text/plain Hi, QA is qreen now, and it's built locally as well! Pushed v2 as 5a33a71e67..9da142540e to master. -- Oleg --=-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEmEeB3micIcJkGAhndtcnv/Ys0rUFAmaQIb0ACgkQdtcnv/Ys 0rV/oA/+L/chkJ5x3lOFQ80zI+G2qJSrFCI7nBxlVpANgHPw1ukEyuJAsDwbN2Nw XOqYIRBjOQUn1AAwbVafRqePwBTElswipo7G97SovzJynaZuB+e9EjkZymgpqHhN OfbRlh8gvKKVJtM+5uu6kEFvJr5/PZIEk3f9JbFEfk+sKhD0nne4Y2cBvh1U291Q YSseLubbt6n1/ow0ZTybhA+DwbQkWIezy3O8vt2lGabSgBGEVoyhfWICt8R7o3oI DXXUPs/ZhQ39VZTLU98T048KiNRWlQf4XhYVnJY4rcENDH8px+yFK2goTjhLt82f bMxf4CkBEwkh737XO1xxmjm7Xn7uJMOr85ocjqOJMm3c+F92y/ZqmlLVzb8kHYil Kb1nnZQ2jp9DYUWO6Iqq83F/LdKHpVfNPc2tk++gnj2tZDdeU6pGQfeQiuRXHgIG SydCuebBFumT3CqDg75QzbHlCpIRzpw3GGmoQU1SumvQpRvzGxQp7VCyTdnVHtx+ 86nlSFECfp8JIBzzV9nLgOyHQsRsFt+8VWN/OT+8n8ZOuaYsqtqvGPwD3mWFegoE YtwKYyWpIeDHaqgyBmiNFMHyrm4miIHl8sz+bOS1N8H60n9815JJqAkTifd6N+hF zCdZ5oMkgpb51XMVUcwe0OawoB9GGcl5pCDCEi3+WJTeem505iw= =oNOT -----END PGP SIGNATURE----- --=-=-=-- From unknown Fri Aug 15 03:38:46 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Fri, 09 Aug 2024 11:24:11 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator