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Reply-To: bug#71651 <71651@debbugs.gnu.org> Date: Thu, 19 Jun 2025 06:14:56 +0000 retitle 71651 [PATCH] gnu: Add r-anpan. reassign 71651 guix-patches submitter 71651 "Afkhami, Navid" severity 71651 normal tag 71651 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Wed Jun 19 11:04:38 2024 Received: (at submit) by debbugs.gnu.org; 19 Jun 2024 15:04:38 +0000 Received: from localhost ([127.0.0.1]:47624 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sJwrW-0003uS-CA for submit@debbugs.gnu.org; Wed, 19 Jun 2024 11:04:38 -0400 Received: from lists.gnu.org ([209.51.188.17]:38638) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sJwrT-0003uK-JG for submit@debbugs.gnu.org; Wed, 19 Jun 2024 11:04:36 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sJwrP-00079X-UD for guix-patches@gnu.org; Wed, 19 Jun 2024 11:04:31 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sJwrN-0001PT-Io for guix-patches@gnu.org; Wed, 19 Jun 2024 11:04:31 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1718809465; x=1720623866; bh=+0RlK5g06he6wRd effDHOroA5BWONcTWsOXrTP+MMEA=; b=g8prHgsLx7PemZ7Mais4DagMGOk61ds dgbo8mPKPPVCMPVa7gZm7xN+w+MNwdPpziWHyltHj6yzPKmemMM5BZKyws28jAS4 V9xdy4JvEYLnEsHEKV+M3tfJpALeOzcAcekfSyOmfcjNwte4DbjfJw7QGFyMDJD8 E+K88f06jlG8= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id BD01B160154 for ; Wed, 19 Jun 2024 17:04:25 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.11; Wed, 19 Jun 2024 17:04:25 +0200 From: "Afkhami, Navid" To: Subject: [PATCH] gnu: Add r-anpan. 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Change-Id: Ia01ba3be7424306674b9c9b2904f1f0cfa66d818 --- gnu/packages/bioinformatics.scm | 48 +++++++++++++++++++++++++++++++++ 1 file changed, 48 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index e2632a5aa4..8ffc46d86d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -752,6 +752,54 @@ (define-public r-anndatar @code{SingleCellExperiment} and Seurat objects.") (license license:expat)))) +(define-public r-anpan + (let ((commit "286b88dcf5e9e963a595482139aade154ee1dc86") + (revision "1")) + (package + (name "r-anpan") + (version (git-version "0.3.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/biobakery/anpan") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "10nw5v69gn4pxb4g5gd8nh9r1ywd6yczapl3dpdfms0434wcmkxm")))) + (properties `((upstream-name . "anpan"))) + (build-system r-build-system) + (propagated-inputs (list r-ape + r-cmdstanr + r-data-table + r-dplyr + r-fastglm + r-furrr + r-future + r-ggdendro + r-ggnewscale + r-ggplot2 + r-loo + r-mass + r-patchwork + r-phylogram + r-posterior + r-progressr + r-purrr + r-r-utils + r-stringr + r-tibble + r-tidyselect)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/biobakery/anpan") + (synopsis "Quantifying microbial strain-host associations") + (description + "The goal of anpan is to consolidate statistical methods for strain analysis. +This includes automated filtering of metagenomic functional profiles, testing genetic +elements for association with outcomes, phylogenetic association testing, and +pathway-level random effects models.") + (license license:expat)))) + (define-public r-bedtorch (let ((commit "f5ff4f83b94f59eac660333c64e4b2f296b35cea") (revision "1")) base-commit: c551e406a75273583ae3fef92f32468f905cc07f prerequisite-patch-id: 70095eccc2035390725bf119749d138d609d2b83 prerequisite-patch-id: 016f9a35b1da6b5916599f4cc6616fc9738c2b46 -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Mon Jul 01 09:50:06 2024 Received: (at 71651-done) by debbugs.gnu.org; 1 Jul 2024 13:50:06 +0000 Received: from localhost ([127.0.0.1]:60601 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sOHPx-0004X9-UF for submit@debbugs.gnu.org; Mon, 01 Jul 2024 09:50:06 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21187) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sOHPv-0004Wy-0t for 71651-done@debbugs.gnu.org; Mon, 01 Jul 2024 09:50:04 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1719841800; cv=none; d=zohomail.com; s=zohoarc; b=iI3yh6ZQ2GHOGaLPOxp3XXx7K3yU4/S2xMKTTEzc6E5qoORrRLDuqsKjB1FdOyypdp8ElRxqUzAxZXYNkujzTC2OJ9Ige+yE+dY9LecMlVAsQbwaLq1QveTIxeaHYKSBrcxmDhSoN+4rrT1jwF+kNtrVYgnt3cw4e0B+oQ4CglE= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1719841800; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=lPBhQcGp9AoUmRmT23sG4S/UVtfy0G4ynmG+9OjzgoE=; b=hPwZwvAiynLZ9zjAIMDyEPQaddLX/126AKc9ryNcQCeLVwQi+Ho2IWRLOvh2oFe/DlCjfUr5r8V58f5ejzaQSwz5y4xz8zk3yROEcOgDwpotZvHF3INoCKov/oOoxo1a0KWgVaKu+C1aioCqXSe2WNZX9rr70hRNArcvryhaBLA= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1719841800; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=lPBhQcGp9AoUmRmT23sG4S/UVtfy0G4ynmG+9OjzgoE=; b=I3w2/ZPTQmWzsqHA437fhSm39vwXBXxnXjxJNNhl+mJYYojs6yuwOcgmZdSjhvD5 zhAOltVBBLLDAp26kQDkV9uHd9VPJwpggvKaOEbbd4sWPTI+dAFcr8FjPMPlyBk1tMQ RItqImCPURG2YpGiL5c6u0XJ90vRJDPah2gcIMh4= Received: by mx.zohomail.com with SMTPS id 1719841799150932.8089585816323; Mon, 1 Jul 2024 06:49:59 -0700 (PDT) From: Ricardo Wurmus To: 71651-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-anpan. Date: Mon, 01 Jul 2024 15:49:55 +0200 Message-ID: <87tth9te64.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 71651-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied, thank you! -- Ricardo From unknown Wed Jun 18 23:14:56 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Tue, 30 Jul 2024 11:24:09 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator