From unknown Sat Jun 21 03:29:00 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#71649] [PATCH] gnu: Add r-fastglm. Resent-From: "Afkhami, Navid" Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 19 Jun 2024 12:23:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 71649 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 71649@debbugs.gnu.org Cc: "Afkhami, Navid" X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.171879973624919 (code B ref -1); Wed, 19 Jun 2024 12:23:01 +0000 Received: (at submit) by debbugs.gnu.org; 19 Jun 2024 12:22:16 +0000 Received: from localhost ([127.0.0.1]:41961 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sJuKN-0006Tq-SN for submit@debbugs.gnu.org; Wed, 19 Jun 2024 08:22:16 -0400 Received: from lists.gnu.org ([209.51.188.17]:36218) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sJuKL-0006Th-IS for submit@debbugs.gnu.org; Wed, 19 Jun 2024 08:22:14 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sJuKI-0005FI-22 for guix-patches@gnu.org; Wed, 19 Jun 2024 08:22:10 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sJuKF-0003YK-8A for guix-patches@gnu.org; Wed, 19 Jun 2024 08:22:09 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1718799722; x=1720614123; bh=u19BSB/EEeb0qYD FXOJkVV/7wllDZKjbGmnCX22zrHM=; b=kotTjcdpaJ2ISz+fgka/m60GCH1LV7G hdrOFaCuhJdcl1i41Nb2FeYA6K3xEFXUuagfPdUFP6EJ4gcNSU/LITflPLiocS7I i3GY/XNj4sZb/Yil6ccvY6xzl4uOOqI2wbIytv+6BuQVoecZJxwDPr0fr268lc0a uMvqjvfuYzGQ= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 69A45160146 for ; Wed, 19 Jun 2024 14:22:01 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.11; Wed, 19 Jun 2024 14:22:00 +0200 From: "Afkhami, Navid" Date: Wed, 19 Jun 2024 12:20:32 +0000 Message-ID: <8f667593ab7837be32900950ae66b057d066d5e2.1718799631.git.Navid.Afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28462.007 X-TM-AS-Result: No-10--1.192400-5.000000 X-TMASE-MatchedRID: a3KJLn6RIiIEZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhU/t nHz76F/jpkLUBRn+nRjABo6AR1sb2oqKGmXzWdcHb3Pl2Oyrc7BrcVVB7l3jO0dHaV3pL+lJtuv Q/r5wItf5lB0avnZskZmz0R8Op9C7OS8MCt7q+UHk+QJ4zu017VHdSSkRFiZk8sQPx9xTib5jc9 9KY0Ed8qODSWu0oxbKJP/2DvkXaK9aOxpgjiWHdVV0twgLfg8YDwMDN8PkH7BSnR8egrFUkH+v7 wQ0POGJ4XwmlJgBQjwUwiD7Cgk1U/qxOTJ6GlU4vdN61AgbDGxL+LSws1xHwnbEps530T7igSxF iFFmX9Lox9rqorLqIj47jot1RqlnCuhB+Hs2Q+XFRuRzIFoKqH7cGd19dSFd X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--1.192400-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28462.007 X-TM-SNTS-SMTP: 9B1A57045CBECA15743A8B7796F9838A232F418722BA751A85E7B8CE61FE35F12000:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/cran.scm (r-fastglm): New variable. Change-Id: I187c9579b1f8ff47e47d721d9684c16698066148 --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 83f395a69e..c84e3c3687 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5273,6 +5273,30 @@ (define-public r-fastmap data structures in C++.") (license license:expat))) +(define-public r-fastglm + (package + (name "r-fastglm") + (version "0.0.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "fastglm" version)) + (sha256 + (base32 "0283kgk81cxbii7ljmp1rzqg5mzkvf7cj7lflhhhkgj5ljqina2i")))) + (properties `((upstream-name . "fastglm"))) + (build-system r-build-system) + (propagated-inputs (list r-bh r-bigmemory r-rcpp r-rcppeigen)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=fastglm") + (synopsis + "Fast and stable fitting of generalized linear models using 'RcppEigen'") + (description + "This package fits generalized linear models efficiently using @code{RcppEigen}'. +The iteratively reweighted least squares implementation utilizes the +step-halving approach of Marschner to help safeguard against convergence +issues.") + (license license:gpl2+))) + (define-public r-fastghquad (package (name "r-fastghquad") base-commit: da1f3aff2ea9a98651ebc69c8385ba136fe2e325 prerequisite-patch-id: 01e990e85f2d1bd0c50ae32161d5ccf814a0ef7e -- 2.34.1 From unknown Sat Jun 21 03:29:00 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: "Afkhami, Navid" Subject: bug#71649: closed (Close) Message-ID: References: <8f667593ab7837be32900950ae66b057d066d5e2.1718799631.git.Navid.Afkhami@mdc-berlin.de> X-Gnu-PR-Message: they-closed 71649 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 71649@debbugs.gnu.org Date: Sun, 30 Jun 2024 08:51:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1719737462-5198-1" This is a multi-part message in MIME format... ------------=_1719737462-5198-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #71649: [PATCH] gnu: Add r-fastglm. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 71649@debbugs.gnu.org. --=20 71649: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D71649 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1719737462-5198-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 71649-done) by debbugs.gnu.org; 30 Jun 2024 08:50:36 +0000 Received: from localhost ([127.0.0.1]:54966 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sNqGa-0001Kc-AR for submit@debbugs.gnu.org; Sun, 30 Jun 2024 04:50:36 -0400 Received: from hera.aquilenet.fr ([185.233.100.1]:58736) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sNqGX-0001KA-Gv; Sun, 30 Jun 2024 04:50:34 -0400 Received: from localhost (localhost [127.0.0.1]) by hera.aquilenet.fr (Postfix) with ESMTP id 7105ABDD; Sun, 30 Jun 2024 10:50:27 +0200 (CEST) X-Virus-Scanned: Debian amavisd-new at hera.aquilenet.fr Received: from hera.aquilenet.fr ([127.0.0.1]) by localhost (hera.aquilenet.fr [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id ESo0_oJwIypQ; Sun, 30 Jun 2024 10:50:27 +0200 (CEST) Received: from jurong (unknown [IPv6:2001:861:c4:f2f0::c64]) by hera.aquilenet.fr (Postfix) with ESMTPSA id DC40A1E6; Sun, 30 Jun 2024 10:50:26 +0200 (CEST) Date: Sun, 30 Jun 2024 10:50:25 +0200 From: Andreas Enge To: 71647-done@debbugs.gnu.org, 71649-done@debbugs.gnu.org, 71650-done@debbugs.gnu.org Subject: Close Message-ID: MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 71649-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Thanks for the patches, I have pushed them after small changes to the synopsis or description and adding a 2024 copyright line for you. Andreas ------------=_1719737462-5198-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 19 Jun 2024 12:22:16 +0000 Received: from localhost ([127.0.0.1]:41961 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sJuKN-0006Tq-SN for submit@debbugs.gnu.org; Wed, 19 Jun 2024 08:22:16 -0400 Received: from lists.gnu.org ([209.51.188.17]:36218) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sJuKL-0006Th-IS for submit@debbugs.gnu.org; Wed, 19 Jun 2024 08:22:14 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sJuKI-0005FI-22 for guix-patches@gnu.org; Wed, 19 Jun 2024 08:22:10 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sJuKF-0003YK-8A for guix-patches@gnu.org; Wed, 19 Jun 2024 08:22:09 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1718799722; x=1720614123; bh=u19BSB/EEeb0qYD FXOJkVV/7wllDZKjbGmnCX22zrHM=; b=kotTjcdpaJ2ISz+fgka/m60GCH1LV7G hdrOFaCuhJdcl1i41Nb2FeYA6K3xEFXUuagfPdUFP6EJ4gcNSU/LITflPLiocS7I i3GY/XNj4sZb/Yil6ccvY6xzl4uOOqI2wbIytv+6BuQVoecZJxwDPr0fr268lc0a uMvqjvfuYzGQ= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 69A45160146 for ; Wed, 19 Jun 2024 14:22:01 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.11; Wed, 19 Jun 2024 14:22:00 +0200 From: "Afkhami, Navid" To: Subject: [PATCH] gnu: Add r-fastglm. Date: Wed, 19 Jun 2024 12:20:32 +0000 Message-ID: <8f667593ab7837be32900950ae66b057d066d5e2.1718799631.git.Navid.Afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28462.007 X-TM-AS-Result: No-10--1.192400-5.000000 X-TMASE-MatchedRID: a3KJLn6RIiIEZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhU/t nHz76F/jpkLUBRn+nRjABo6AR1sb2oqKGmXzWdcHb3Pl2Oyrc7BrcVVB7l3jO0dHaV3pL+lJtuv Q/r5wItf5lB0avnZskZmz0R8Op9C7OS8MCt7q+UHk+QJ4zu017VHdSSkRFiZk8sQPx9xTib5jc9 9KY0Ed8qODSWu0oxbKJP/2DvkXaK9aOxpgjiWHdVV0twgLfg8YDwMDN8PkH7BSnR8egrFUkH+v7 wQ0POGJ4XwmlJgBQjwUwiD7Cgk1U/qxOTJ6GlU4vdN61AgbDGxL+LSws1xHwnbEps530T7igSxF iFFmX9Lox9rqorLqIj47jot1RqlnCuhB+Hs2Q+XFRuRzIFoKqH7cGd19dSFd X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--1.192400-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28462.007 X-TM-SNTS-SMTP: 9B1A57045CBECA15743A8B7796F9838A232F418722BA751A85E7B8CE61FE35F12000:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit Cc: "Afkhami, Navid" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/cran.scm (r-fastglm): New variable. Change-Id: I187c9579b1f8ff47e47d721d9684c16698066148 --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 83f395a69e..c84e3c3687 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5273,6 +5273,30 @@ (define-public r-fastmap data structures in C++.") (license license:expat))) +(define-public r-fastglm + (package + (name "r-fastglm") + (version "0.0.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "fastglm" version)) + (sha256 + (base32 "0283kgk81cxbii7ljmp1rzqg5mzkvf7cj7lflhhhkgj5ljqina2i")))) + (properties `((upstream-name . "fastglm"))) + (build-system r-build-system) + (propagated-inputs (list r-bh r-bigmemory r-rcpp r-rcppeigen)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=fastglm") + (synopsis + "Fast and stable fitting of generalized linear models using 'RcppEigen'") + (description + "This package fits generalized linear models efficiently using @code{RcppEigen}'. +The iteratively reweighted least squares implementation utilizes the +step-halving approach of Marschner to help safeguard against convergence +issues.") + (license license:gpl2+))) + (define-public r-fastghquad (package (name "r-fastghquad") base-commit: da1f3aff2ea9a98651ebc69c8385ba136fe2e325 prerequisite-patch-id: 01e990e85f2d1bd0c50ae32161d5ccf814a0ef7e -- 2.34.1 ------------=_1719737462-5198-1--