GNU bug report logs - #71344
[PATCH] gnu: Add r-rnacrosslinkoo.

Previous Next

To add a comment to this bug, you must first unarchive it, by sending
a message to control AT debbugs.gnu.org, with unarchive 71344 in the body.
You can then email your comments to 71344 AT debbugs.gnu.org in the normal way.

Toggle the display of automated, internal messages from the tracker.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: "Afkhami, Navid" <Navid.Afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: "Afkhami, Navid" <Navid.Afkhami <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add r-rnacrosslinkoo.
Date: Mon, 3 Jun 2024 15:18:44 +0000

* gnu/packages/bioinformatics.scm (r-rnacrosslinkoo): New variable.

Change-Id: I1ca6dcef9c093627c3743d1176e587cf40053ba0
---
 gnu/packages/bioinformatics.scm | 44 +++++++++++++++++++++++++++++++++
 1 file changed, 44 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cdda029809..afdf818b07 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13915,6 +13915,50 @@ (define-public r-raremetals2
 trait.")
     (license license:gpl3)))
 
+(define-public r-rnacrosslinkoo
+  (let ((commit "a317e0fa6ddf34c309529d57390769e2b2b5bfb7")
+        (revision "1"))
+    (package
+      (name "r-rnacrosslinkoo")
+      (version (git-version "0.1.3" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/cran/rnaCrosslinkOO")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0csv9924z0ish960k034qzv3gxh1yabnxni8hsrn5j6xl1r3cdpl"))))
+      (properties `((upstream-name . "rnaCrosslinkOO")))
+      (build-system r-build-system)
+      (propagated-inputs (list r-classdiscovery
+                               r-doparallel
+                               r-foreach
+                               r-genomicranges
+                               r-ggplot2
+                               r-ggrepel
+                               r-heatmap3
+                               r-igraph
+                               r-iranges
+                               r-mass
+                               r-mixtools
+                               r-patchwork
+                               r-r4rna
+                               r-rcolorbrewer
+                               r-reshape2
+                               r-rrna
+                               r-s4vectors
+                               r-seqinr
+                               r-tidyverse
+                               r-topdom))
+      (native-inputs (list r-knitr))
+      (home-page "https://github.com/cran/rnaCrosslinkOO")
+      (synopsis "Analysis of RNA crosslinking data")
+      (description
+       "The package is ideal for analyzing RNA structure and chemical probing data.")
+      (license license:gpl3))))
+
 (define-public r-rnaseqdtu
   (let ((commit "5bee1e769d2e1dc6a3f1cecb78078050eeb5b9ac")
         (revision "1"))

base-commit: 1615084a9a4115d48b75b3db048761e7534efc87
prerequisite-patch-id: 191a8394dbe6f865a9dc55bfc1b62e9dffc2180d
prerequisite-patch-id: 3ddb7b281335b1bb4ced1e60a1f243a12a5cba2b
prerequisite-patch-id: 23c7f331c5a70d80ff65f3b52bd29d19d87c5b8d
prerequisite-patch-id: a5f9464498560b3ba9ddb894482fc48a3a472d74
-- 
2.34.1

Message #10 received at 71344-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 71344-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-rnacrosslinkoo.
Date: Fri, 28 Jun 2024 12:36:28 +0200

Applied, thank you!

-- 
Ricardo

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.