From unknown Sun Jun 22 00:58:49 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#71342] [PATCH] gnu: Add r-rrna. Resent-From: "Afkhami, Navid" Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 03 Jun 2024 14:58:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 71342 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 71342@debbugs.gnu.org Cc: "Afkhami, Navid" X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.171742666925128 (code B ref -1); Mon, 03 Jun 2024 14:58:02 +0000 Received: (at submit) by debbugs.gnu.org; 3 Jun 2024 14:57:49 +0000 Received: from localhost ([127.0.0.1]:42196 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sE988-0006XE-St for submit@debbugs.gnu.org; Mon, 03 Jun 2024 10:57:49 -0400 Received: from lists.gnu.org ([209.51.188.17]:55956) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sE986-0006X5-S0 for submit@debbugs.gnu.org; Mon, 03 Jun 2024 10:57:47 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sE97t-0004Di-BY for guix-patches@gnu.org; Mon, 03 Jun 2024 10:57:33 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sE97q-0001mc-IV for guix-patches@gnu.org; Mon, 03 Jun 2024 10:57:32 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1717426646; x=1719241047; bh=HTftRw6JOlk8Gb5 nKU4HIdlUwqANWeXH67HjGHGrg+k=; b=DDT4KbLbX1DUg09uwLxVIhchNIwIzGo SKAbaIK6ZoVPUHWa3cd3f2SMZuqdFPfNtdZ2aHgA0Tg4XmzVFHd24Fg8aHC3KOKM 2VH+6U5a8773NSuFD+Hrt5mSO34+4weS6ifha/hKnUzahx3GegfX+GgkTu0UEwyx Pua4qJx4lnxg= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 1CDC3300175 for ; Mon, 3 Jun 2024 16:57:26 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.11; Mon, 3 Jun 2024 16:57:25 +0200 From: "Afkhami, Navid" Date: Mon, 3 Jun 2024 14:56:09 +0000 Message-ID: <7d050f43ccbcb8a0a252ac17dddbcbb2ab834c21.1717426569.git.Navid.Afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28430.000 X-TM-AS-Result: No-10--2.963400-5.000000 X-TMASE-MatchedRID: 2wfub8HDRfMEZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhdqK Kei3fK/BuP2uihwIy0iu5Y9WGrdMHhV9IJL+D0rbju2XlcEx9HRI3RrBc0CPBQLbwVZWOSEXh21 EBzIb6oy7DuEe0FD8gKaszY4Pekoy8CsHqdsq1hfYeXOEzfM22XiBfPQ+YIRHv9rSd36EgULQoH BWslVIiAe98bp28iq6IpPAUP0w+vLMRVv+rGRR+HejKLn8WYem2wtFOIVbPG72OKa43z1PGYyyl CE5mytMb2sWxGjlpwMkUvUA2P4g1pHGAzCTh08Uq1jZFP+ZbgCrfOH/fRNpgm/H7LhIKjO20bWl 8H0Q2RO0ML47Km+X9EYOAQXCbpqgPpCuffGH9zI= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.963400-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28430.000 X-TM-SNTS-SMTP: 6D79114DDE258AB29729122B3499726E1A6D0C12EEBC2F9D653C49946973416F2000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/cran.scm (r-rrna): New variable. Change-Id: I8ed081ba32453fdae3a10b492a1c5b4f64b50925 --- gnu/packages/cran.scm | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b0ccee37bb..6c8724e4ee 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1749,6 +1749,23 @@ (define-public r-rorcid Orcid ID.") (license license:expat))) +(define-public r-rrna + (package + (name "r-rrna") + (version "1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "RRNA" version)) + (sha256 + (base32 "0bgsakpz1wr3wr6c5xa7wx2xmzs3xzkscrgwn6dc7f93kpq1j17p")))) + (properties `((upstream-name . "RRNA"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=RRNA") + (synopsis "Secondary structure plotting for RNA") + (description "This package facilitates RNA secondary structure plotting.") + (license license:gpl3))) + (define-public r-ruv (package (name "r-ruv") base-commit: 1615084a9a4115d48b75b3db048761e7534efc87 prerequisite-patch-id: 191a8394dbe6f865a9dc55bfc1b62e9dffc2180d prerequisite-patch-id: 3ddb7b281335b1bb4ced1e60a1f243a12a5cba2b prerequisite-patch-id: 23c7f331c5a70d80ff65f3b52bd29d19d87c5b8d -- 2.34.1 From unknown Sun Jun 22 00:58:49 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: "Afkhami, Navid" Subject: bug#71342: closed ([PATCH] gnu: Add r-rrna.) Message-ID: References: <87le2pwg42.fsf@elephly.net> <7d050f43ccbcb8a0a252ac17dddbcbb2ab834c21.1717426569.git.Navid.Afkhami@mdc-berlin.de> X-Gnu-PR-Message: they-closed 71342 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 71342@debbugs.gnu.org Date: Fri, 28 Jun 2024 09:51:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1719568262-1899-1" This is a multi-part message in MIME format... ------------=_1719568262-1899-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #71342: [PATCH] gnu: Add r-rrna. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 71342@debbugs.gnu.org. --=20 71342: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D71342 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1719568262-1899-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 71342-done) by debbugs.gnu.org; 28 Jun 2024 09:50:48 +0000 Received: from localhost ([127.0.0.1]:44676 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sN8Fj-0000To-P1 for submit@debbugs.gnu.org; Fri, 28 Jun 2024 05:50:48 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21108) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sN8Fg-0000T3-Mi for 71342-done@debbugs.gnu.org; Fri, 28 Jun 2024 05:50:45 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1719568242; cv=none; d=zohomail.com; s=zohoarc; b=D31gJX05dyee+WJm2VxlU4anOswHzSe236kBAenY/c3SUyHhdRjTBTrEPDspvc4l+kFldVoGOsKFfqFCq/guP2/x45hvYUz2PMpqwZMCFlHMs4G+cpyVmaOAHfBJ6fffTH73SRIIS2aUzdsq3khk90QHaNo2dZgUgAKOLLsavRA= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1719568242; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=AZq50075najozsXpWqNjL17VMH9K+OoDzh0Av33+6k8=; b=ivi/yO9ufWEezNy6MkpTvPalD7mr93nXkfunCPGjYSZF/M1W7zQl4Idf6ewFiw9ecoez83rEWA4loLGzBZu57EUAFUCjCmk1yGW1uvWvDEJ/koz+jBk5nxU8TxAnMpBPH0xJLWkFRtjdiHgUnhbOPAflXF/ckf7fFt99TYuc93M= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1719568242; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=AZq50075najozsXpWqNjL17VMH9K+OoDzh0Av33+6k8=; b=eHztesmPnatgR3xAy6fDv9YjG6req6HAce7X5ntloXCxiirnBasUNmxqdEX3+GOj QgmqV8UG21Bg4MfPCd0yLJ6HEshH+hKZE5IRe3rEfxZaPPKD8uD/kPKtMVKo0xE8t9H 1ZUJp9rEN0hy9IPrPRUsiMc9tnOAtc8dgHa7J2Ps= Received: by mx.zohomail.com with SMTPS id 1719568240581963.6093392212731; Fri, 28 Jun 2024 02:50:40 -0700 (PDT) From: Ricardo Wurmus To: 71342-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-rrna. Date: Fri, 28 Jun 2024 11:50:37 +0200 Message-ID: <87le2pwg42.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 71342-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Thank you, I've applied it with commit 2c0a3896c1a0ece30a117b1acb89e1474ab15cef. -- Ricardo ------------=_1719568262-1899-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 3 Jun 2024 14:57:49 +0000 Received: from localhost ([127.0.0.1]:42196 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sE988-0006XE-St for submit@debbugs.gnu.org; Mon, 03 Jun 2024 10:57:49 -0400 Received: from lists.gnu.org ([209.51.188.17]:55956) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sE986-0006X5-S0 for submit@debbugs.gnu.org; Mon, 03 Jun 2024 10:57:47 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sE97t-0004Di-BY for guix-patches@gnu.org; Mon, 03 Jun 2024 10:57:33 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sE97q-0001mc-IV for guix-patches@gnu.org; Mon, 03 Jun 2024 10:57:32 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1717426646; x=1719241047; bh=HTftRw6JOlk8Gb5 nKU4HIdlUwqANWeXH67HjGHGrg+k=; b=DDT4KbLbX1DUg09uwLxVIhchNIwIzGo SKAbaIK6ZoVPUHWa3cd3f2SMZuqdFPfNtdZ2aHgA0Tg4XmzVFHd24Fg8aHC3KOKM 2VH+6U5a8773NSuFD+Hrt5mSO34+4weS6ifha/hKnUzahx3GegfX+GgkTu0UEwyx Pua4qJx4lnxg= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 1CDC3300175 for ; Mon, 3 Jun 2024 16:57:26 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.11; Mon, 3 Jun 2024 16:57:25 +0200 From: "Afkhami, Navid" To: Subject: [PATCH] gnu: Add r-rrna. Date: Mon, 3 Jun 2024 14:56:09 +0000 Message-ID: <7d050f43ccbcb8a0a252ac17dddbcbb2ab834c21.1717426569.git.Navid.Afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28430.000 X-TM-AS-Result: No-10--2.963400-5.000000 X-TMASE-MatchedRID: 2wfub8HDRfMEZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhdqK Kei3fK/BuP2uihwIy0iu5Y9WGrdMHhV9IJL+D0rbju2XlcEx9HRI3RrBc0CPBQLbwVZWOSEXh21 EBzIb6oy7DuEe0FD8gKaszY4Pekoy8CsHqdsq1hfYeXOEzfM22XiBfPQ+YIRHv9rSd36EgULQoH BWslVIiAe98bp28iq6IpPAUP0w+vLMRVv+rGRR+HejKLn8WYem2wtFOIVbPG72OKa43z1PGYyyl CE5mytMb2sWxGjlpwMkUvUA2P4g1pHGAzCTh08Uq1jZFP+ZbgCrfOH/fRNpgm/H7LhIKjO20bWl 8H0Q2RO0ML47Km+X9EYOAQXCbpqgPpCuffGH9zI= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.963400-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28430.000 X-TM-SNTS-SMTP: 6D79114DDE258AB29729122B3499726E1A6D0C12EEBC2F9D653C49946973416F2000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit Cc: "Afkhami, Navid" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/cran.scm (r-rrna): New variable. Change-Id: I8ed081ba32453fdae3a10b492a1c5b4f64b50925 --- gnu/packages/cran.scm | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b0ccee37bb..6c8724e4ee 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1749,6 +1749,23 @@ (define-public r-rorcid Orcid ID.") (license license:expat))) +(define-public r-rrna + (package + (name "r-rrna") + (version "1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "RRNA" version)) + (sha256 + (base32 "0bgsakpz1wr3wr6c5xa7wx2xmzs3xzkscrgwn6dc7f93kpq1j17p")))) + (properties `((upstream-name . "RRNA"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=RRNA") + (synopsis "Secondary structure plotting for RNA") + (description "This package facilitates RNA secondary structure plotting.") + (license license:gpl3))) + (define-public r-ruv (package (name "r-ruv") base-commit: 1615084a9a4115d48b75b3db048761e7534efc87 prerequisite-patch-id: 191a8394dbe6f865a9dc55bfc1b62e9dffc2180d prerequisite-patch-id: 3ddb7b281335b1bb4ced1e60a1f243a12a5cba2b prerequisite-patch-id: 23c7f331c5a70d80ff65f3b52bd29d19d87c5b8d -- 2.34.1 ------------=_1719568262-1899-1--