GNU bug report logs - #71146
[PATCH] gnu: kallisto: Update to 0.50.1

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: guix <at> mawumag.com
Subject: bug#71146: closed ([PATCH] gnu: kallisto: Update to 0.50.1)
Date: Mon, 04 Nov 2024 14:52:02 +0000

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Your bug report

#71146: [PATCH] gnu: kallisto: Update to 0.50.1

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 71146 <at> debbugs.gnu.org.

-- 
71146: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=71146
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 71146-done <at> debbugs.gnu.org
Cc: guix <at> mawumag.com
Subject: [PATCH] gnu: kallisto: Update to 0.50.1
Date: Mon, 04 Nov 2024 15:51:22 +0100

Hi,

I'm back to work now and just reviewed our discussion on kallisto. 
We
may want to revisit the decision to not unbundle libbifrost and 
htslib
at a later point, but at the moment I agree to keep the bundled
libraries until we've attained more clarity.

I removed the now obsolete build phase completely and I disabled
parallel building (see comment).

Thanks for the patch and my apologies for not being able to merge 
this
sooner!

-- 
Ricardo

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From: guix <at> mawumag.com
To: guix-patches <at> gnu.org
Cc: Ricardo Wurmus <rekado <at> elephly.net>
Subject: [PATCH] gnu: kallisto: Update to 0.50.1
Date: Thu, 23 May 2024 09:53:54 +0000

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Updated kallisto to 0.50.1, it now supports more single-cell technologies (e.g. SPLiT-seq).

I had to modify the 'do-not-use-bundled-htslib snippet to make one regex more selective---in this new version it the previous regex was mistakenly modifying parts of CMakeLists.txt other than the intended one.

[0001-gnu-kallisto-Update-to-0.50.1.patch (text/x-patch, attachment)]

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