GNU bug report logs - #71146
[PATCH] gnu: kallisto: Update to 0.50.1

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Package: guix-patches;

Reported by: guix <at> mawumag.com

Date: Thu, 23 May 2024 13:38:02 UTC

Severity: normal

Tags: patch

Done: Ricardo Wurmus <rekado <at> elephly.net>

Bug is archived. No further changes may be made.

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Message #11 received at 71146 <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: guix <at> mawumag.com
Cc: 71146 <at> debbugs.gnu.org
Subject: Re: [PATCH] gnu: kallisto: Update to 0.50.1
Date: Sat, 01 Jun 2024 21:13:30 +0200

Thank you for the patch!

> I had to modify the 'do-not-use-bundled-htslib snippet to make one
> regex more selective---in this new version it the previous regex was
> mistakenly modifying parts of CMakeLists.txt other than the intended
> one.

It looks like this might not be working as intended.  I used:

    guix gc -R $(./pre-inst-env guix build kallisto)

and it shows me that the newly built kallisto does not link with our
htslib.  Perhaps it used the static library?

-- 
Ricardo
This bug report was last modified 200 days ago.

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